Wall clock time and date at job start Tue Mar 31 2020 04:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47148 * 239.99814 * 3 2 1 5 5 H 1.48500 * 109.47351 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47357 * 120.00179 * 3 2 1 7 7 C 1.37878 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99676 * 173.55391 * 7 2 1 9 9 C 1.50695 * 120.00310 * 353.55824 * 7 2 1 10 10 C 1.52998 * 115.55026 * 85.40482 * 9 7 2 11 11 N 1.46500 * 109.47312 * 65.14459 * 10 9 7 12 12 C 1.34779 * 119.99798 * 178.28977 * 11 10 9 13 13 O 1.21582 * 120.00643 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99715 * 179.97438 * 12 11 10 15 15 C 1.46491 * 120.00054 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47345 * 179.97438 * 15 14 12 17 17 H 1.09005 * 110.32758 * 59.30046 * 16 15 14 18 18 C 1.54474 * 110.46630 * 181.61367 * 16 15 14 19 19 C 1.54513 * 104.06076 * 142.86321 * 18 16 15 20 20 C 1.54472 * 104.06086 * 359.97438 * 19 18 16 21 21 H 1.09000 * 110.46414 * 94.90476 * 20 19 18 22 22 C 1.53004 * 110.37227 * 217.19207 * 20 19 18 23 23 O 1.42895 * 109.47193 * 181.83907 * 22 20 19 24 24 O 1.44419 * 110.37333 * 297.05376 * 16 15 14 25 25 C 1.53000 * 117.50141 * 231.07609 * 9 7 2 26 26 C 1.52995 * 117.49936 * 299.73433 * 9 7 2 27 27 H 0.96992 * 120.00147 * 5.06726 * 1 2 3 28 28 H 1.09001 * 109.47225 * 305.13954 * 10 9 7 29 29 H 1.09003 * 109.47560 * 185.14255 * 10 9 7 30 30 H 0.96996 * 120.00159 * 358.28277 * 11 10 9 31 31 H 0.97003 * 119.99631 * 0.02562 * 14 12 11 32 32 H 1.09004 * 109.47145 * 59.99859 * 15 14 12 33 33 H 1.08995 * 109.47324 * 300.00006 * 15 14 12 34 34 H 1.09006 * 110.51072 * 261.50312 * 18 16 15 35 35 H 1.08999 * 110.51621 * 24.21234 * 18 16 15 36 36 H 1.09006 * 110.50819 * 241.35209 * 19 18 16 37 37 H 1.09001 * 110.63059 * 118.70185 * 19 18 16 38 38 H 1.09004 * 109.47104 * 301.83365 * 22 20 19 39 39 H 1.08999 * 109.46942 * 61.83604 * 22 20 19 40 40 H 0.96708 * 114.00160 * 180.02562 * 23 22 20 41 41 H 1.08998 * 117.50124 * 215.00580 * 25 9 7 42 42 H 1.09000 * 117.49417 * 0.02562 * 25 9 7 43 43 H 1.09004 * 117.50030 * 359.97438 * 26 9 7 44 44 H 1.09004 * 117.50260 * 144.97305 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1045 9 6 1.2582 -2.4950 0.1475 10 6 0.7022 -3.0869 -1.1491 11 7 1.8113 -3.4601 -2.0306 12 6 1.5601 -4.0372 -3.2223 13 8 0.4131 -4.2487 -3.5658 14 7 2.5804 -4.3800 -4.0335 15 6 2.3075 -5.0078 -5.3286 16 6 3.6286 -5.2926 -6.0460 17 1 4.2520 -5.9532 -5.4434 18 6 3.3658 -5.9187 -7.4335 19 6 4.4569 -5.3014 -8.3367 20 6 5.2493 -4.3748 -7.3881 21 1 6.1222 -4.8927 -6.9909 22 6 5.6748 -3.1007 -8.1207 23 8 6.4419 -2.2781 -7.2394 24 8 4.3258 -4.0587 -6.3240 25 6 1.7470 -3.4729 1.2179 26 6 0.4417 -2.7006 1.4250 27 1 -0.4850 0.8367 -0.0742 28 1 0.0755 -2.3470 -1.6470 29 1 0.1076 -3.9711 -0.9193 30 1 2.7264 -3.2917 -1.7566 31 1 3.4955 -4.2116 -3.7593 32 1 1.7013 -4.3367 -5.9372 33 1 1.7693 -5.9428 -5.1729 34 1 3.4741 -7.0025 -7.3901 35 1 2.3734 -5.6473 -7.7933 36 1 4.0038 -4.7246 -9.1431 37 1 5.1051 -6.0784 -8.7417 38 1 6.2789 -3.3652 -8.9886 39 1 4.7888 -2.5562 -8.4471 40 1 6.7456 -1.4510 -7.6380 41 1 1.6726 -4.5379 0.9983 42 1 2.6081 -3.1750 1.8161 43 1 0.4447 -1.8950 2.1594 44 1 -0.4917 -3.2572 1.3417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584030464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:13 Heat of formation + Delta-G solvation = -106.824629 kcal Electronic energy + Delta-G solvation = -24305.814635 eV Core-core repulsion = 20644.832970 eV Total energy + Delta-G solvation = -3660.981665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.07501 -39.09786 -36.89618 -36.63699 -34.36661 -33.13741 -32.45731 -31.90691 -30.92351 -27.56103 -25.91884 -24.96273 -23.40235 -21.72047 -21.26162 -21.14057 -20.07077 -19.29539 -17.74006 -17.57901 -16.74435 -16.38552 -16.32930 -15.64513 -15.18520 -14.84649 -14.56921 -14.17333 -14.05536 -13.88146 -13.86409 -13.23806 -12.92766 -12.72359 -12.53376 -12.07462 -11.95609 -11.66318 -11.54284 -11.46943 -11.39715 -10.94888 -10.93772 -10.85491 -10.49166 -10.33625 -10.21197 -9.94830 -9.66218 -9.43982 -8.90849 -8.73377 -8.42921 -8.18266 -7.86826 -6.01157 -4.09433 3.24121 3.32679 3.37758 3.39776 3.55353 3.79226 3.91628 4.21586 4.41379 4.53363 4.55994 4.79141 4.89046 4.94817 4.97112 5.07287 5.15912 5.21315 5.27072 5.37614 5.43469 5.44615 5.62710 5.69940 5.76858 5.94570 6.10188 6.40881 6.53955 6.63265 6.67031 6.75461 6.88775 6.93669 7.14672 7.36527 7.42700 7.49491 7.54919 7.70527 7.88099 8.41108 8.77442 8.91086 9.31392 9.56989 11.06750 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.003486 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.913024 B = 8029.395210 C = 9312.611057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.183 3.817 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.607 6.607 14 N -0.750 5.750 15 C 0.151 3.849 16 C 0.060 3.940 17 H 0.076 0.924 18 C -0.146 4.146 19 C -0.147 4.147 20 C 0.074 3.926 21 H 0.075 0.925 22 C 0.082 3.918 23 O -0.565 6.565 24 O -0.350 6.350 25 C -0.211 4.211 26 C -0.148 4.148 27 H 0.262 0.738 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.396 0.604 31 H 0.397 0.603 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.380 0.620 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.204 -10.685 -16.712 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.372 5.372 12 C 0.399 3.601 13 O -0.488 6.488 14 N -0.407 5.407 15 C 0.026 3.974 16 C 0.002 3.998 17 H 0.094 0.906 18 C -0.184 4.184 19 C -0.185 4.185 20 C 0.016 3.984 21 H 0.093 0.907 22 C 0.004 3.996 23 O -0.370 6.370 24 O -0.269 6.269 25 C -0.248 4.248 26 C -0.186 4.186 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.229 0.771 31 H 0.231 0.769 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.227 0.773 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.779 -11.017 -16.418 22.058 hybrid contribution 1.396 1.396 -0.330 2.001 sum 11.175 -9.621 -16.748 22.315 Atomic orbital electron populations 1.69965 1.05877 1.26975 1.48270 1.24975 0.94795 0.98904 0.94313 0.86695 0.79661 0.83224 0.78625 1.20228 1.21316 1.20230 1.20305 0.92801 0.88657 1.51999 0.92274 1.19031 0.98527 0.93866 0.85759 1.20834 0.86658 0.96575 0.90036 1.45124 1.11298 1.63569 1.17229 1.16020 0.84489 0.78837 0.80800 1.90855 1.19924 1.62185 1.75789 1.44952 1.08758 1.67802 1.19168 1.21121 0.94225 0.98432 0.83600 1.23305 0.93757 0.86827 0.95908 0.90648 1.22898 1.00236 1.00984 0.94302 1.22905 0.97717 0.99128 0.98778 1.22987 0.93050 0.94419 0.87981 0.90730 1.22224 0.94731 0.91202 0.91427 1.86562 1.73170 1.35378 1.41888 1.89322 1.53250 1.30305 1.53994 1.23015 0.98616 0.95681 1.07500 1.22487 0.92270 1.01064 1.02772 0.92836 0.91275 0.94800 0.77056 0.76889 0.91228 0.90626 0.89972 0.89838 0.90301 0.90126 0.92462 0.92696 0.77316 0.91663 0.90425 0.89850 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.91 12.91 55.43 0.72 -24.19 16 2 C 0.07 2.02 5.39 -17.82 -0.10 1.93 16 3 Si 0.89 21.17 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.50 -13.26 8.63 -34.44 -0.30 -13.56 16 8 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 9 C 0.03 0.70 1.38 -155.67 -0.21 0.49 16 10 C 0.18 4.37 5.50 -4.04 -0.02 4.35 16 11 N -0.72 -15.06 5.48 -65.22 -0.36 -15.42 16 12 C 0.70 14.37 8.57 -86.91 -0.74 13.63 16 13 O -0.61 -14.70 16.34 5.29 0.09 -14.61 16 14 N -0.75 -11.94 5.50 -65.23 -0.36 -12.30 16 15 C 0.15 2.01 5.30 -4.04 -0.02 1.99 16 16 C 0.06 0.62 3.34 -25.96 -0.09 0.53 16 17 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 18 C -0.15 -1.09 6.63 -25.16 -0.17 -1.26 16 19 C -0.15 -0.98 6.63 -25.16 -0.17 -1.15 16 20 C 0.07 0.69 3.57 -25.96 -0.09 0.59 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 C 0.08 0.69 6.65 37.16 0.25 0.94 16 23 O -0.56 -5.91 13.65 -36.45 -0.50 -6.41 16 24 O -0.35 -4.44 10.95 -36.45 -0.40 -4.83 16 25 C -0.21 -4.51 9.96 -26.70 -0.27 -4.77 16 26 C -0.15 -3.46 9.42 -26.70 -0.25 -3.71 16 27 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16 28 H 0.07 1.90 8.14 -51.93 -0.42 1.48 16 29 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 30 H 0.40 7.62 8.38 -40.82 -0.34 7.28 16 31 H 0.40 5.64 8.47 -40.82 -0.35 5.30 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 36 H 0.08 0.47 7.87 -51.93 -0.41 0.07 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.38 2.18 9.12 45.56 0.42 2.60 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 44 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -34.08 368.46 -9.01 -43.09 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -6.55 Total: 12.97 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.18 Total: 0.00 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.00 Total: -51.90 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.81 Total: -25.86 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.08 -9.01 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584030464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.735 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds