Wall clock time and date at job start Tue Mar 31 2020 04:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00038 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00369 * 179.97438 * 13 12 11 16 16 C 1.46505 * 120.00115 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46958 * 179.97438 * 16 15 13 18 18 H 1.08995 * 110.27369 * 307.09356 * 17 16 15 19 19 C 1.54949 * 110.30505 * 185.00146 * 17 16 15 20 20 C 1.55310 * 100.93625 * 204.63982 * 19 17 16 21 21 C 1.54388 * 102.25347 * 34.13627 * 20 19 17 22 22 H 1.09001 * 109.82973 * 98.24213 * 21 20 19 23 23 C 1.50697 * 109.82812 * 219.12381 * 21 20 19 24 24 N 1.34774 * 120.00305 * 295.00201 * 23 21 20 25 25 O 1.21284 * 119.99207 * 114.99943 * 23 21 20 26 26 O 1.43237 * 107.58818 * 338.63894 * 21 20 19 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 33 33 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 34 34 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 35 35 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 36 36 H 0.97003 * 119.99640 * 359.97438 * 15 13 12 37 37 H 1.08998 * 109.47168 * 300.00640 * 16 15 13 38 38 H 1.09002 * 109.46801 * 60.00474 * 16 15 13 39 39 H 1.08997 * 111.12552 * 322.56143 * 19 17 16 40 40 H 1.08996 * 111.12593 * 86.68609 * 19 17 16 41 41 H 1.09003 * 110.84205 * 152.32050 * 20 19 17 42 42 H 1.09000 * 110.85120 * 275.73899 * 20 19 17 43 43 H 0.96995 * 120.00084 * 0.02562 * 24 23 21 44 44 H 0.97002 * 119.99866 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4551 0.0005 14 8 0.5079 -7.4551 0.0005 15 7 2.3946 -8.6224 0.0005 16 6 1.6620 -9.8911 0.0011 17 6 2.6562 -11.0541 0.0003 18 1 3.3697 -10.9404 -0.8158 19 6 1.9052 -12.4035 -0.1258 20 6 2.9297 -13.3728 0.5246 21 6 3.5632 -12.4915 1.6226 22 1 3.0919 -12.7013 2.5828 23 6 5.0424 -12.7663 1.7084 24 7 5.4809 -13.9797 2.0982 25 8 5.8382 -11.8955 1.4267 26 8 3.3433 -11.1234 1.2599 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 0.8531 -5.0451 0.8897 33 1 0.8537 -5.0446 -0.8902 34 1 3.1015 -6.0923 -0.8891 35 1 3.1004 -6.0924 0.8909 36 1 3.3646 -8.6224 0.0002 37 1 1.0356 -9.9486 0.8913 38 1 1.0351 -9.9490 -0.8887 39 1 0.9702 -12.3865 0.4341 40 1 1.7300 -12.6594 -1.1707 41 1 2.4249 -14.2343 0.9619 42 1 3.6777 -13.6910 -0.2015 43 1 4.8445 -14.6762 2.3231 44 1 6.4331 -14.1564 2.1538 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588161583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:59 Heat of formation + Delta-G solvation = -182.699100 kcal Electronic energy + Delta-G solvation = -23223.821350 eV Core-core repulsion = 19559.549521 eV Total energy + Delta-G solvation = -3664.271829 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.46489 -40.67888 -39.33085 -36.70734 -35.80595 -34.82536 -34.60542 -33.13461 -31.99679 -30.98537 -27.99479 -26.69281 -24.29927 -23.31145 -22.64466 -21.76772 -21.31625 -21.12775 -18.64570 -18.47709 -18.41442 -17.99030 -17.22419 -17.02170 -16.75823 -16.67393 -16.46845 -15.62326 -15.60065 -15.20333 -14.81297 -14.54592 -14.42756 -13.99561 -13.77411 -13.56940 -13.41203 -13.29367 -12.97269 -12.83803 -12.69449 -12.37788 -12.27357 -12.14900 -12.13757 -11.93946 -11.38169 -11.37189 -11.34504 -11.15046 -10.75766 -10.67812 -10.55495 -10.43522 -10.11506 -8.18698 -6.30734 1.40052 1.41281 1.54912 1.55846 1.64837 2.17117 2.29436 2.42168 2.86645 3.13719 3.38031 3.69042 3.85104 3.89234 3.98117 4.06187 4.06818 4.14722 4.21577 4.40443 4.55617 4.57075 4.68130 4.68934 4.84351 4.84933 4.87729 4.90767 4.97195 5.17009 5.19629 5.32964 5.35306 5.44825 5.57472 5.78254 5.79133 5.88168 5.93897 6.25798 6.47058 6.52239 6.87515 7.25119 7.33706 7.38604 8.93750 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.001960 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.810399 B =14283.622233 C =14991.032138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.097 4.097 11 C -0.094 4.094 12 C -0.131 4.131 13 C 0.512 3.488 14 O -0.587 6.587 15 N -0.720 5.720 16 C 0.121 3.879 17 C 0.066 3.934 18 H 0.080 0.920 19 C -0.141 4.141 20 C -0.133 4.133 21 C 0.056 3.944 22 H 0.131 0.869 23 C 0.498 3.502 24 N -0.831 5.831 25 O -0.587 6.587 26 O -0.376 6.376 27 H 0.263 0.737 28 H -0.014 1.014 29 H -0.015 1.015 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.414 0.586 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.084 0.916 43 H 0.420 0.580 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.342 -38.263 1.760 39.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.170 4.170 13 C 0.300 3.700 14 O -0.467 6.467 15 N -0.372 5.372 16 C -0.002 4.002 17 C 0.009 3.991 18 H 0.098 0.902 19 C -0.179 4.179 20 C -0.171 4.171 21 C -0.005 4.005 22 H 0.148 0.852 23 C 0.283 3.717 24 N -0.397 5.397 25 O -0.467 6.467 26 O -0.294 6.294 27 H 0.072 0.928 28 H 0.005 0.995 29 H 0.004 0.996 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.250 0.750 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.103 0.897 43 H 0.252 0.748 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 8.752 -37.341 1.667 38.390 hybrid contribution 0.481 0.670 0.143 0.837 sum 9.233 -36.671 1.811 37.859 Atomic orbital electron populations 1.70143 1.08012 1.27680 1.51911 1.26106 0.95837 1.03751 0.94798 0.85312 0.79108 0.78350 0.77733 1.18246 1.20338 1.20414 1.21782 0.93720 0.92266 1.50177 0.91703 1.19062 0.94677 0.93715 0.94423 1.21460 0.97874 0.92881 1.01225 1.21233 0.97403 0.93453 1.01142 1.21675 0.99046 0.89874 1.06419 1.21124 0.87748 0.86633 0.74494 1.90681 1.16148 1.88406 1.51498 1.45948 1.11123 1.05164 1.74996 1.21571 0.94245 0.81688 1.02736 1.23371 0.93312 0.95806 0.86617 0.90214 1.23292 0.99145 0.91114 1.04384 1.23144 0.98503 0.98998 0.96414 1.22929 0.91033 0.83728 1.02789 0.85204 1.21493 0.92184 0.82511 0.75542 1.43661 1.12837 1.13386 1.69822 1.90762 1.58469 1.46846 1.50612 1.88564 1.78063 1.24467 1.38331 0.92836 0.99514 0.99633 0.92307 0.92098 0.93847 0.93547 0.86462 0.86966 0.74970 0.91905 0.89657 0.88543 0.87264 0.85156 0.89732 0.74787 0.76085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.01 13.29 21.45 0.28 -59.72 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.54 -32.36 9.11 25.60 0.23 -32.12 16 8 H 0.06 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.04 4.97 29.85 0.15 1.19 16 10 C -0.10 -4.19 5.15 30.59 0.16 -4.03 16 11 C -0.09 -3.63 4.50 30.59 0.14 -3.49 16 12 C -0.13 -3.67 5.70 29.85 0.17 -3.50 16 13 C 0.51 15.35 7.83 87.66 0.69 16.04 16 14 O -0.59 -22.90 15.98 -3.05 -0.05 -22.95 16 15 N -0.72 -16.14 5.55 -463.04 -2.57 -18.71 16 16 C 0.12 2.27 5.38 86.38 0.46 2.74 16 17 C 0.07 0.91 3.47 31.26 0.11 1.01 16 18 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 19 C -0.14 -0.81 6.57 32.05 0.21 -0.60 16 20 C -0.13 -0.37 6.51 31.86 0.21 -0.17 16 21 C 0.06 0.56 3.95 30.32 0.12 0.68 16 22 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 23 C 0.50 7.09 7.31 87.66 0.64 7.73 16 24 N -0.83 -3.46 8.85 -173.54 -1.54 -4.99 16 25 O -0.59 -15.63 17.36 15.76 0.27 -15.36 16 26 O -0.38 -6.88 10.25 -130.18 -1.33 -8.21 16 27 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 28 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 34 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.41 7.77 8.47 -92.71 -0.79 6.98 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 0.46 8.06 -2.39 -0.02 0.44 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.08 0.26 7.85 -2.39 -0.02 0.25 16 43 H 0.42 -1.56 8.83 -92.71 -0.82 -2.38 16 44 H 0.41 1.50 8.93 -92.71 -0.83 0.67 16 Total: -1.00 -89.96 370.14 -0.57 -90.53 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -1.41 Total: 5.99 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 3.75 Total: -14.53 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.82 Total: -83.43 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -1.11 Total: -46.52 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -89.96 -0.57 -90.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.170 kcal (2) G-P(sol) polarization free energy of solvation -89.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds