Wall clock time and date at job start Tue Mar 31 2020 04:21:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45195 * 1
3 3 C 1.34232 * 116.99917 * 2 1
4 4 O 1.20821 * 119.99891 * 0.02562 * 3 2 1
5 5 C 1.50704 * 119.99690 * 180.02562 * 3 2 1
6 6 C 1.53005 * 109.87089 * 204.56482 * 5 3 2
7 7 C 1.54321 * 109.88119 * 83.55228 * 5 3 2
8 8 C 1.55157 * 103.10033 * 218.29592 * 7 5 3
9 9 C 1.55392 * 101.36576 * 35.49711 * 8 7 5
10 10 N 1.47019 * 109.88382 * 325.73886 * 5 3 2
11 11 C 1.34777 * 125.65068 * 298.32505 * 10 5 3
12 12 O 1.21277 * 119.99926 * 359.97438 * 11 10 5
13 13 C 1.50704 * 119.99914 * 180.02562 * 11 10 5
14 14 H 1.09003 * 109.46968 * 319.99489 * 13 11 10
15 15 N 1.46903 * 109.46718 * 199.99997 * 13 11 10
16 16 C 1.52998 * 109.47215 * 79.99793 * 13 11 10
17 17 C 1.52998 * 109.46888 * 184.99922 * 16 13 11
18 18 C 1.50705 * 109.47106 * 180.02562 * 17 16 13
19 19 H 1.07996 * 119.99646 * 0.02562 * 18 17 16
20 20 C 1.37871 * 119.99652 * 179.97438 * 18 17 16
21 21 N 1.31520 * 119.99669 * 180.02562 * 20 18 17
22 22 Si 1.86796 * 120.00537 * 0.02562 * 20 18 17
23 23 H 1.48499 * 109.47140 * 89.99914 * 22 20 18
24 24 H 1.48502 * 109.46969 * 210.00078 * 22 20 18
25 25 H 1.48496 * 109.46857 * 329.99852 * 22 20 18
26 26 H 1.09001 * 109.46768 * 299.99508 * 1 2 3
27 27 H 1.08996 * 109.47302 * 59.99457 * 1 2 3
28 28 H 1.09000 * 109.47236 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47283 * 300.44136 * 6 5 3
30 30 H 1.08998 * 109.47068 * 60.43917 * 6 5 3
31 31 H 1.08997 * 109.47034 * 180.44071 * 6 5 3
32 32 H 1.09002 * 110.72109 * 336.74973 * 7 5 3
33 33 H 1.09003 * 110.72356 * 99.84798 * 7 5 3
34 34 H 1.09004 * 111.00537 * 153.66574 * 8 7 5
35 35 H 1.09001 * 111.00741 * 277.51995 * 8 7 5
36 36 H 1.08999 * 110.34334 * 204.17153 * 9 8 7
37 37 H 1.08998 * 110.44545 * 81.91304 * 9 8 7
38 38 H 1.00896 * 111.00055 * 299.99774 * 15 13 11
39 39 H 1.00898 * 111.00193 * 63.95334 * 15 13 11
40 40 H 1.08999 * 109.47288 * 304.99727 * 16 13 11
41 41 H 1.08997 * 109.46877 * 64.99773 * 16 13 11
42 42 H 1.09006 * 109.47343 * 300.00035 * 17 16 13
43 43 H 1.09005 * 109.47277 * 59.99939 * 17 16 13
44 44 H 0.96997 * 120.00282 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2748 -0.0006
6 6 4.0175 2.6088 0.5977
7 6 4.0983 1.1398 -1.4429
8 6 5.3799 0.2832 -1.2662
9 6 4.9545 -0.6706 -0.1156
10 7 4.1257 0.1598 0.7773
11 6 3.9163 -0.0657 2.0895
12 8 3.2135 0.6875 2.7295
13 6 4.5563 -1.2530 2.7616
14 1 4.5166 -2.1136 2.0938
15 7 3.8327 -1.5622 4.0021
16 6 6.0151 -0.9285 3.0893
17 6 6.6992 -2.1736 3.6573
18 6 8.1360 -1.8538 3.9807
19 1 8.5223 -0.8617 3.7996
20 6 8.9569 -2.8276 4.5087
21 7 10.2107 -2.5484 4.7914
22 14 8.2885 -4.5434 4.8226
23 1 8.4882 -5.3814 3.6130
24 1 9.0071 -5.1522 5.9707
25 1 6.8388 -4.4606 5.1336
26 1 -0.3633 0.5138 0.8901
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 -0.0005
29 1 3.6076 3.4287 0.0079
30 1 3.6600 2.6859 1.6245
31 1 5.1061 2.6622 0.5869
32 1 3.3743 0.6250 -2.0744
33 1 4.3425 2.1181 -1.8571
34 1 5.6064 -0.2732 -2.1758
35 1 6.2259 0.9025 -0.9681
36 1 5.8323 -1.0388 0.4154
37 1 4.3717 -1.5041 -0.5077
38 1 3.8550 -0.7794 4.6384
39 1 2.8834 -1.8425 3.8068
40 1 6.5299 -0.6132 2.1817
41 1 6.0521 -0.1257 3.8256
42 1 6.1844 -2.4889 4.5649
43 1 6.6622 -2.9764 2.9209
44 1 10.7883 -3.2335 5.1625
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000591636994.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:21:19
Heat of formation + Delta-G solvation = -123.267416 kcal
Electronic energy + Delta-G solvation = -25828.577089 eV
Core-core repulsion = 22166.882411 eV
Total energy + Delta-G solvation = -3661.694678 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.35446 -39.79328 -37.88648 -36.65008 -35.41898 -32.80395 -32.11884 -31.56190
-30.50832 -28.22077 -26.85241 -26.20536 -24.48616 -23.16996 -22.17543 -20.76037
-20.06029 -19.28408 -17.82638 -17.31529 -16.72938 -16.55404 -16.26932 -16.12256
-15.56080 -14.81835 -14.63987 -14.15255 -13.95738 -13.87857 -13.62857 -13.38883
-13.16337 -12.78112 -12.67499 -12.53564 -12.37455 -12.33213 -12.17638 -11.80795
-11.66830 -11.48352 -11.10930 -10.98400 -10.94259 -10.87542 -10.59370 -10.38064
-9.93093 -9.77522 -9.58997 -9.12099 -8.86807 -8.52480 -8.42553 -6.00281
-3.98051 1.93099 2.37088 2.72704 2.83129 3.35135 3.43502 3.51458
4.04268 4.25461 4.36064 4.50818 4.64521 4.76333 4.79790 4.87263
4.91685 4.95997 5.05453 5.28046 5.31742 5.33243 5.35412 5.39077
5.44728 5.56201 5.61174 5.62250 5.67124 5.86316 5.98079 6.14057
6.19681 6.29830 6.45930 6.84899 7.20380 7.34289 7.39166 7.56582
7.57504 7.64105 7.85487 8.11981 8.56880 9.04287 9.62775 11.13154
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.022257 B = 0.004017 C = 0.003774
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1257.739044 B = 6968.158465 C = 7416.739404
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.350 6.350
3 C 0.468 3.532
4 O -0.504 6.504
5 C 0.174 3.826
6 C -0.148 4.148
7 C -0.120 4.120
8 C -0.128 4.128
9 C 0.090 3.910
10 N -0.604 5.604
11 C 0.505 3.495
12 O -0.545 6.545
13 C 0.081 3.919
14 H 0.099 0.901
15 N -0.809 5.809
16 C -0.088 4.088
17 C -0.004 4.004
18 C -0.521 4.521
19 H 0.069 0.931
20 C 0.066 3.934
21 N -0.906 5.906
22 Si 0.878 3.122
23 H -0.279 1.279
24 H -0.290 1.290
25 H -0.260 1.260
26 H 0.062 0.938
27 H 0.061 0.939
28 H 0.100 0.900
29 H 0.075 0.925
30 H 0.077 0.923
31 H 0.076 0.924
32 H 0.081 0.919
33 H 0.094 0.906
34 H 0.093 0.907
35 H 0.086 0.914
36 H 0.097 0.903
37 H 0.075 0.925
38 H 0.350 0.650
39 H 0.335 0.665
40 H 0.061 0.939
41 H 0.060 0.940
42 H 0.034 0.966
43 H 0.008 0.992
44 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.863 4.548 -15.374 22.553
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.266 6.266
3 C 0.309 3.691
4 O -0.390 6.390
5 C 0.087 3.913
6 C -0.206 4.206
7 C -0.158 4.158
8 C -0.166 4.166
9 C -0.032 4.032
10 N -0.340 5.340
11 C 0.294 3.706
12 O -0.421 6.421
13 C -0.034 4.034
14 H 0.117 0.883
15 N -0.337 5.337
16 C -0.126 4.126
17 C -0.041 4.041
18 C -0.559 4.559
19 H 0.087 0.913
20 C -0.134 4.134
21 N -0.545 5.545
22 Si 0.706 3.294
23 H -0.205 1.205
24 H -0.216 1.216
25 H -0.184 1.184
26 H 0.080 0.920
27 H 0.079 0.921
28 H 0.119 0.881
29 H 0.094 0.906
30 H 0.096 0.904
31 H 0.095 0.905
32 H 0.100 0.900
33 H 0.113 0.887
34 H 0.111 0.889
35 H 0.104 0.896
36 H 0.115 0.885
37 H 0.094 0.906
38 H 0.164 0.836
39 H 0.147 0.853
40 H 0.079 0.921
41 H 0.078 0.922
42 H 0.052 0.948
43 H 0.027 0.973
44 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -15.797 4.558 -14.717 22.066
hybrid contribution -1.163 -0.044 -0.148 1.173
sum -16.960 4.514 -14.865 22.999
Atomic orbital electron populations
1.23257 0.76628 1.03623 1.02385 1.86536 1.23121 1.33291 1.83661
1.24040 0.91890 0.81480 0.71664 1.90642 1.66720 1.36460 1.45187
1.20918 0.85103 0.90885 0.94385 1.22061 1.02152 0.93232 1.03126
1.22733 0.98299 1.02596 0.92132 1.22893 0.96985 0.97806 0.98876
1.22659 0.95556 0.93848 0.91128 1.48747 1.49827 1.26845 1.08611
1.22528 0.80225 0.88176 0.79720 1.90665 1.39572 1.48684 1.63225
1.21852 0.96862 0.93142 0.91589 0.88298 1.59058 1.19792 1.42807
1.12064 1.21496 0.88770 1.01434 1.00883 1.19487 0.95755 0.92236
0.96639 1.21165 0.93586 0.99149 1.41994 0.91308 1.25005 0.94657
0.98825 0.94947 1.69924 1.05756 1.34201 1.44665 0.86787 0.80086
0.84678 0.77877 1.20482 1.21627 1.18421 0.91950 0.92051 0.88119
0.90607 0.90369 0.90474 0.90036 0.88713 0.88870 0.89580 0.88456
0.90627 0.83597 0.85281 0.92061 0.92168 0.94787 0.97326 0.92841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.34 10.56 101.05 1.07 1.41 16
2 O -0.35 -4.53 10.28 -39.26 -0.40 -4.93 16
3 C 0.47 6.56 5.92 36.01 0.21 6.78 16
4 O -0.50 -8.08 15.87 -18.75 -0.30 -8.38 16
5 C 0.17 2.10 0.79 -131.99 -0.10 2.00 16
6 C -0.15 -1.83 7.92 37.16 0.29 -1.54 16
7 C -0.12 -0.98 5.99 -24.90 -0.15 -1.13 16
8 C -0.13 -0.95 7.12 -24.32 -0.17 -1.13 16
9 C 0.09 0.90 6.41 -2.26 -0.01 0.88 16
10 N -0.60 -7.74 2.59 -156.76 -0.41 -8.14 16
11 C 0.51 7.85 6.66 -10.98 -0.07 7.78 16
12 O -0.54 -9.93 14.65 5.56 0.08 -9.85 16
13 C 0.08 1.28 2.43 -68.86 -0.17 1.11 16
14 H 0.10 1.44 7.68 -51.93 -0.40 1.04 16
15 N -0.81 -12.77 8.44 -5.65 -0.05 -12.81 16
16 C -0.09 -1.65 4.64 -26.73 -0.12 -1.77 16
17 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16
18 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16
19 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16
20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16
21 N -0.91 -27.80 13.96 55.43 0.77 -27.03 16
22 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16
23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
25 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16
26 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16
27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16
28 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16
29 H 0.08 0.85 7.88 -51.93 -0.41 0.44 16
30 H 0.08 1.21 6.72 -51.93 -0.35 0.86 16
31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
32 H 0.08 0.61 7.84 -51.93 -0.41 0.21 16
33 H 0.09 0.64 7.83 -51.93 -0.41 0.23 16
34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
36 H 0.10 1.05 6.05 -51.93 -0.31 0.73 16
37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
38 H 0.35 5.66 8.58 -39.29 -0.34 5.32 16
39 H 0.34 4.63 9.06 -39.29 -0.36 4.27 16
40 H 0.06 1.08 6.59 -51.93 -0.34 0.74 16
41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
42 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16
43 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16
44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
LS Contribution 355.52 15.07 5.36 5.36
Total: -1.00 -34.81 355.52 -6.42 -41.23
By element:
Atomic # 1 Polarization: 13.51 SS G_CDS: -7.03 Total: 6.47 kcal
Atomic # 6 Polarization: 0.91 SS G_CDS: 0.23 Total: 1.14 kcal
Atomic # 7 Polarization: -48.31 SS G_CDS: 0.32 Total: -47.99 kcal
Atomic # 8 Polarization: -22.54 SS G_CDS: -0.62 Total: -23.16 kcal
Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -34.81 -6.42 -41.23 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591636994.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -82.038 kcal
(2) G-P(sol) polarization free energy of solvation -34.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.267 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds