Wall clock time and date at job start Tue Mar 31 2020 04:21:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45195 * 1
3 3 C 1.34232 * 116.99917 * 2 1
4 4 O 1.20821 * 119.99891 * 0.02562 * 3 2 1
5 5 C 1.50704 * 119.99690 * 180.02562 * 3 2 1
6 6 C 1.53005 * 109.87089 * 204.56482 * 5 3 2
7 7 C 1.54321 * 109.88119 * 83.55228 * 5 3 2
8 8 C 1.55157 * 103.10033 * 218.29592 * 7 5 3
9 9 C 1.55392 * 101.36576 * 35.49711 * 8 7 5
10 10 N 1.47019 * 109.88382 * 325.73886 * 5 3 2
11 11 C 1.34777 * 125.65068 * 298.32505 * 10 5 3
12 12 O 1.21277 * 119.99926 * 359.97438 * 11 10 5
13 13 C 1.50704 * 119.99914 * 180.02562 * 11 10 5
14 14 H 1.09003 * 109.46968 * 319.99489 * 13 11 10
15 15 N 1.46903 * 109.46718 * 199.99997 * 13 11 10
16 16 C 1.52998 * 109.47215 * 79.99793 * 13 11 10
17 17 C 1.52998 * 109.46888 * 184.99922 * 16 13 11
18 18 C 1.50705 * 109.47106 * 180.02562 * 17 16 13
19 19 H 1.07996 * 119.99646 * 0.02562 * 18 17 16
20 20 C 1.37871 * 119.99652 * 179.97438 * 18 17 16
21 21 N 1.31520 * 119.99669 * 180.02562 * 20 18 17
22 22 Si 1.86796 * 120.00537 * 0.02562 * 20 18 17
23 23 H 1.48499 * 109.47140 * 89.99914 * 22 20 18
24 24 H 1.48502 * 109.46969 * 210.00078 * 22 20 18
25 25 H 1.48496 * 109.46857 * 329.99852 * 22 20 18
26 26 H 1.09001 * 109.46768 * 299.99508 * 1 2 3
27 27 H 1.08996 * 109.47302 * 59.99457 * 1 2 3
28 28 H 1.09000 * 109.47236 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47283 * 300.44136 * 6 5 3
30 30 H 1.08998 * 109.47068 * 60.43917 * 6 5 3
31 31 H 1.08997 * 109.47034 * 180.44071 * 6 5 3
32 32 H 1.09002 * 110.72109 * 336.74973 * 7 5 3
33 33 H 1.09003 * 110.72356 * 99.84798 * 7 5 3
34 34 H 1.09004 * 111.00537 * 153.66574 * 8 7 5
35 35 H 1.09001 * 111.00741 * 277.51995 * 8 7 5
36 36 H 1.08999 * 110.34334 * 204.17153 * 9 8 7
37 37 H 1.08998 * 110.44545 * 81.91304 * 9 8 7
38 38 H 1.00896 * 111.00055 * 299.99774 * 15 13 11
39 39 H 1.00898 * 111.00193 * 63.95334 * 15 13 11
40 40 H 1.08999 * 109.47288 * 304.99727 * 16 13 11
41 41 H 1.08997 * 109.46877 * 64.99773 * 16 13 11
42 42 H 1.09006 * 109.47343 * 300.00035 * 17 16 13
43 43 H 1.09005 * 109.47277 * 59.99939 * 17 16 13
44 44 H 0.96997 * 120.00282 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2748 -0.0006
6 6 4.0175 2.6088 0.5977
7 6 4.0983 1.1398 -1.4429
8 6 5.3799 0.2832 -1.2662
9 6 4.9545 -0.6706 -0.1156
10 7 4.1257 0.1598 0.7773
11 6 3.9163 -0.0657 2.0895
12 8 3.2135 0.6875 2.7295
13 6 4.5563 -1.2530 2.7616
14 1 4.5166 -2.1136 2.0938
15 7 3.8327 -1.5622 4.0021
16 6 6.0151 -0.9285 3.0893
17 6 6.6992 -2.1736 3.6573
18 6 8.1360 -1.8538 3.9807
19 1 8.5223 -0.8617 3.7996
20 6 8.9569 -2.8276 4.5087
21 7 10.2107 -2.5484 4.7914
22 14 8.2885 -4.5434 4.8226
23 1 8.4882 -5.3814 3.6130
24 1 9.0071 -5.1522 5.9707
25 1 6.8388 -4.4606 5.1336
26 1 -0.3633 0.5138 0.8901
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 -0.0005
29 1 3.6076 3.4287 0.0079
30 1 3.6600 2.6859 1.6245
31 1 5.1061 2.6622 0.5869
32 1 3.3743 0.6250 -2.0744
33 1 4.3425 2.1181 -1.8571
34 1 5.6064 -0.2732 -2.1758
35 1 6.2259 0.9025 -0.9681
36 1 5.8323 -1.0388 0.4154
37 1 4.3717 -1.5041 -0.5077
38 1 3.8550 -0.7794 4.6384
39 1 2.8834 -1.8425 3.8068
40 1 6.5299 -0.6132 2.1817
41 1 6.0521 -0.1257 3.8256
42 1 6.1844 -2.4889 4.5649
43 1 6.6622 -2.9764 2.9209
44 1 10.7883 -3.2335 5.1625
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000591636994.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:21:19
Heat of formation + Delta-G solvation = -148.347207 kcal
Electronic energy + Delta-G solvation = -25829.664630 eV
Core-core repulsion = 22166.882411 eV
Total energy + Delta-G solvation = -3662.782219 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-42.36330 -40.90646 -38.89580 -37.68429 -36.89670 -34.79157 -33.11008 -32.40559
-32.26704 -29.07282 -28.44274 -27.04286 -25.81937 -24.42519 -23.03430 -22.17100
-21.36818 -20.34572 -19.09094 -18.68263 -18.32147 -17.53242 -17.31040 -17.15411
-16.83166 -16.21918 -15.82624 -15.73988 -15.06981 -14.82217 -14.75219 -14.67264
-14.28644 -14.08486 -14.02318 -13.62062 -13.45462 -13.43499 -13.23891 -13.06769
-12.79047 -12.71180 -12.53946 -12.13816 -11.94981 -11.92976 -11.76128 -11.72993
-11.57631 -11.51252 -11.26780 -11.10833 -10.67808 -9.88784 -9.72407 -8.21946
-6.24992 0.89347 1.31275 1.42157 1.46310 1.59810 1.67130 1.82714
2.44377 3.14940 3.22915 3.45348 3.50663 3.55587 3.73817 3.87753
4.05661 4.12997 4.16866 4.19087 4.24239 4.34981 4.44369 4.54988
4.61631 4.67036 4.70660 4.79690 4.80559 4.88666 4.99625 5.08977
5.14114 5.21642 5.23495 5.29839 5.52193 5.67171 5.76439 6.01505
6.29767 6.35426 6.44685 6.54221 6.83468 6.95703 7.39683 8.94841
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.022257 B = 0.004017 C = 0.003774
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1257.739044 B = 6968.158465 C = 7416.739404
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.357 6.357
3 C 0.464 3.536
4 O -0.533 6.533
5 C 0.166 3.834
6 C -0.144 4.144
7 C -0.112 4.112
8 C -0.117 4.117
9 C 0.079 3.921
10 N -0.600 5.600
11 C 0.504 3.496
12 O -0.578 6.578
13 C 0.092 3.908
14 H 0.120 0.880
15 N -0.816 5.816
16 C -0.077 4.077
17 C 0.004 3.996
18 C -0.528 4.528
19 H 0.029 0.971
20 C 0.005 3.995
21 N -0.955 5.955
22 Si 0.949 3.051
23 H -0.262 1.262
24 H -0.291 1.291
25 H -0.246 1.246
26 H 0.047 0.953
27 H 0.071 0.929
28 H 0.132 0.868
29 H 0.085 0.915
30 H 0.041 0.959
31 H 0.088 0.912
32 H 0.094 0.906
33 H 0.113 0.887
34 H 0.124 0.876
35 H 0.085 0.915
36 H 0.089 0.911
37 H 0.095 0.905
38 H 0.345 0.655
39 H 0.347 0.653
40 H 0.070 0.930
41 H 0.037 0.963
42 H 0.027 0.973
43 H 0.025 0.975
44 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.998 2.737 -17.595 24.617
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.272 6.272
3 C 0.307 3.693
4 O -0.422 6.422
5 C 0.078 3.922
6 C -0.202 4.202
7 C -0.149 4.149
8 C -0.155 4.155
9 C -0.042 4.042
10 N -0.334 5.334
11 C 0.292 3.708
12 O -0.458 6.458
13 C -0.024 4.024
14 H 0.137 0.863
15 N -0.345 5.345
16 C -0.116 4.116
17 C -0.034 4.034
18 C -0.567 4.567
19 H 0.048 0.952
20 C -0.192 4.192
21 N -0.596 5.596
22 Si 0.773 3.227
23 H -0.187 1.187
24 H -0.218 1.218
25 H -0.170 1.170
26 H 0.066 0.934
27 H 0.089 0.911
28 H 0.150 0.850
29 H 0.104 0.896
30 H 0.060 0.940
31 H 0.107 0.893
32 H 0.112 0.888
33 H 0.131 0.869
34 H 0.142 0.858
35 H 0.103 0.897
36 H 0.107 0.893
37 H 0.113 0.887
38 H 0.159 0.841
39 H 0.161 0.839
40 H 0.089 0.911
41 H 0.056 0.944
42 H 0.045 0.955
43 H 0.043 0.957
44 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -16.941 2.731 -16.988 24.146
hybrid contribution -0.807 0.599 0.529 1.136
sum -17.748 3.330 -16.459 24.433
Atomic orbital electron populations
1.23525 0.75082 1.05659 1.02195 1.86518 1.24745 1.32700 1.83245
1.24447 0.92660 0.81388 0.70806 1.90621 1.67494 1.37362 1.46719
1.21191 0.84225 0.90125 0.96619 1.22017 1.02791 0.94265 1.01121
1.22807 0.98659 1.04066 0.89392 1.22927 0.96334 0.97240 0.99010
1.22964 0.95134 0.94710 0.91364 1.48768 1.49294 1.27274 1.08110
1.22346 0.80090 0.87695 0.80676 1.90657 1.41210 1.49573 1.64366
1.21654 0.94656 0.94056 0.92021 0.86264 1.59061 1.20743 1.42604
1.12071 1.21270 0.90953 0.98867 1.00474 1.19360 0.92748 0.94377
0.96865 1.21531 0.96175 0.97492 1.41455 0.95243 1.25969 0.94781
1.03629 0.94783 1.70080 1.07450 1.35879 1.46207 0.85669 0.79850
0.79020 0.78197 1.18652 1.21772 1.16968 0.93379 0.91056 0.84994
0.89620 0.94007 0.89306 0.88785 0.86907 0.85828 0.89680 0.89252
0.88696 0.84132 0.83942 0.91100 0.94372 0.95506 0.95694 0.92708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.51 10.56 113.37 1.20 1.71 16
2 O -0.36 -8.65 10.28 -51.44 -0.53 -9.18 16
3 C 0.46 12.58 5.92 71.24 0.42 13.01 16
4 O -0.53 -17.05 15.87 21.98 0.35 -16.70 16
5 C 0.17 3.75 0.79 3.21 0.00 3.75 16
6 C -0.14 -3.53 7.92 71.98 0.57 -2.96 16
7 C -0.11 -1.48 5.99 31.78 0.19 -1.29 16
8 C -0.12 -1.32 7.12 32.16 0.23 -1.09 16
9 C 0.08 1.34 6.41 87.02 0.56 1.90 16
10 N -0.60 -14.42 2.59 -768.25 -1.99 -16.40 16
11 C 0.50 15.30 6.66 87.66 0.58 15.88 16
12 O -0.58 -21.35 14.65 -3.02 -0.04 -21.39 16
13 C 0.09 2.76 2.43 44.17 0.11 2.87 16
14 H 0.12 3.11 7.68 -2.39 -0.02 3.10 16
15 N -0.82 -24.87 8.44 -171.79 -1.45 -26.32 16
16 C -0.08 -2.87 4.64 30.59 0.14 -2.73 16
17 C 0.00 0.18 3.93 29.85 0.12 0.30 16
18 C -0.53 -29.88 9.66 25.60 0.25 -29.64 16
19 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16
20 C 0.00 0.27 5.47 84.65 0.46 0.73 16
21 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16
22 Si 0.95 43.90 27.47 68.60 1.88 45.78 16
23 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16
24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
25 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16
26 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16
27 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16
28 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16
29 H 0.08 1.87 7.88 -2.39 -0.02 1.85 16
30 H 0.04 1.33 6.72 -2.39 -0.02 1.31 16
31 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16
32 H 0.09 1.06 7.84 -2.39 -0.02 1.04 16
33 H 0.11 1.13 7.83 -2.39 -0.02 1.11 16
34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16
35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
36 H 0.09 1.69 6.05 -2.39 -0.01 1.67 16
37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
38 H 0.35 11.16 8.58 -89.70 -0.77 10.39 16
39 H 0.35 9.10 9.06 -89.70 -0.81 8.29 16
40 H 0.07 2.46 6.59 -2.39 -0.02 2.45 16
41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
42 H 0.03 1.25 6.81 -2.38 -0.02 1.23 16
43 H 0.02 1.04 7.57 -2.38 -0.02 1.03 16
44 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16
Total: -1.00 -77.52 355.52 2.73 -74.79
By element:
Atomic # 1 Polarization: 26.99 SS G_CDS: -0.62 Total: 26.37 kcal
Atomic # 6 Polarization: -2.39 SS G_CDS: 4.83 Total: 2.44 kcal
Atomic # 7 Polarization: -98.97 SS G_CDS: -3.14 Total: -102.11 kcal
Atomic # 8 Polarization: -47.05 SS G_CDS: -0.22 Total: -47.27 kcal
Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal
Total: -77.52 2.73 -74.79 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591636994.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.556 kcal
(2) G-P(sol) polarization free energy of solvation -77.518 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.791 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds