Wall clock time and date at job start Tue Mar 31 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00258 * 2 1 4 4 H 1.48493 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47432 * 300.00580 * 3 2 1 6 6 H 1.48501 * 109.46693 * 60.00454 * 3 2 1 7 7 C 1.37878 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00272 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.64499 * 298.31613 * 9 7 2 11 11 C 1.55159 * 110.72245 * 174.98159 * 9 7 2 12 12 C 1.55132 * 101.48684 * 205.97001 * 11 9 7 13 13 N 1.47422 * 104.72087 * 37.29365 * 12 11 9 14 14 C 1.34777 * 125.64727 * 155.82223 * 13 12 11 15 15 O 1.21593 * 119.99953 * 179.68840 * 14 13 12 16 16 N 1.34773 * 120.00097 * 359.95968 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.52999 * 109.47528 * 180.02562 * 17 16 14 19 19 H 1.09005 * 109.47451 * 305.02276 * 18 17 16 20 20 C 1.53094 * 109.47922 * 185.00071 * 18 17 16 21 21 C 1.53180 * 109.16263 * 182.40189 * 20 18 17 22 22 C 1.53183 * 109.03157 * 56.97721 * 21 20 18 23 23 C 1.53087 * 109.16578 * 303.02150 * 22 21 20 24 24 O 1.42891 * 109.48362 * 65.05580 * 18 17 16 25 25 C 1.47020 * 108.70730 * 335.54988 * 13 12 11 26 26 H 0.97007 * 120.00171 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99615 * 61.68254 * 10 9 7 28 28 H 1.09005 * 111.00089 * 324.20875 * 11 9 7 29 29 H 1.09000 * 111.00555 * 88.05849 * 11 9 7 30 30 H 1.09001 * 110.49739 * 278.45195 * 12 11 9 31 31 H 1.09000 * 110.34355 * 156.05515 * 12 11 9 32 32 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 33 33 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 34 34 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 35 35 H 1.08998 * 109.52181 * 302.31128 * 20 18 17 36 36 H 1.08998 * 109.52289 * 62.50026 * 20 18 17 37 37 H 1.08994 * 109.54527 * 176.84238 * 21 20 18 38 38 H 1.09000 * 109.54509 * 297.02676 * 21 20 18 39 39 H 1.09006 * 109.52011 * 62.92870 * 22 21 20 40 40 H 1.09004 * 109.52061 * 183.04749 * 22 21 20 41 41 H 1.09002 * 109.47696 * 177.59093 * 23 22 21 42 42 H 1.08997 * 109.48015 * 297.61219 * 23 22 21 43 43 H 1.08999 * 109.88065 * 120.70222 * 25 13 12 44 44 H 1.08999 * 109.89017 * 241.71947 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.4501 -2.6186 1.1770 11 6 2.2283 -3.6974 -0.1281 12 6 1.3159 -4.7729 -0.7742 13 7 0.4641 -4.0246 -1.7164 14 6 -0.1422 -4.5381 -2.8051 15 8 -0.8293 -3.8255 -3.5112 16 7 0.0087 -5.8426 -3.1081 17 6 -0.6551 -6.4022 -4.2881 18 6 -0.3228 -7.8913 -4.4021 19 1 0.7593 -8.0228 -4.4085 20 6 -0.9125 -8.4480 -5.7006 21 6 -0.6276 -9.9511 -5.7785 22 6 -1.2078 -10.6345 -4.5364 23 6 -0.6067 -9.9933 -3.2829 24 8 -0.8814 -8.5909 -3.2884 25 6 0.3801 -2.6269 -1.2682 26 1 -0.4851 0.8401 0.0004 27 1 -0.2279 -1.9344 1.2626 28 1 3.0671 -3.4498 -0.7788 29 1 2.5785 -4.0220 0.8517 30 1 0.7043 -5.2606 -0.0150 31 1 1.9170 -5.5086 -1.3084 32 1 0.5568 -6.4111 -2.5447 33 1 -1.7336 -6.2772 -4.1917 34 1 -0.3076 -5.8826 -5.1810 35 1 -1.9895 -8.2803 -5.7129 36 1 -0.4550 -7.9460 -6.5531 37 1 -1.0930 -10.3646 -6.6731 38 1 0.4490 -10.1166 -5.8178 39 1 -2.2908 -10.5109 -4.5251 40 1 -0.9626 -11.6964 -4.5569 41 1 -1.0481 -10.4467 -2.3954 42 1 0.4715 -10.1526 -3.2746 43 1 0.7591 -1.9646 -2.0465 44 1 -0.6545 -2.3731 -1.0372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591932291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:13 Heat of formation + Delta-G solvation = -133.516039 kcal Electronic energy + Delta-G solvation = -24971.541832 eV Core-core repulsion = 21309.402740 eV Total energy + Delta-G solvation = -3662.139092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.96518 -39.28451 -37.34164 -34.60102 -34.19536 -33.91596 -32.18394 -31.61825 -29.87344 -27.84022 -26.95648 -24.97565 -24.23267 -22.71937 -22.05480 -20.66793 -19.60893 -19.29176 -17.60714 -17.01491 -16.70035 -16.15399 -15.85761 -15.26709 -14.93186 -14.81964 -14.76146 -14.31483 -14.13939 -13.56718 -13.21743 -13.01644 -12.90139 -12.77584 -12.64628 -12.33079 -12.03514 -11.62038 -11.59258 -11.41989 -11.34323 -11.04047 -10.99414 -10.76614 -10.62191 -10.58330 -10.43473 -10.12814 -9.76340 -9.52518 -9.27003 -8.76508 -8.64508 -8.26640 -7.68569 -6.24047 -4.32532 3.15827 3.24019 3.31956 3.35312 3.48257 3.82612 4.29458 4.37550 4.45714 4.51588 4.56417 4.75568 4.86955 4.92273 5.03795 5.12935 5.27359 5.39127 5.42881 5.46820 5.55952 5.61449 5.69901 5.75101 5.76128 5.81284 5.87494 5.99148 6.07568 6.15962 6.56098 6.76550 6.80839 6.94457 6.99481 7.05520 7.32168 7.37522 7.71509 7.77501 8.08576 8.59852 8.71858 9.19978 9.34013 9.42564 10.83763 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.034633 B = 0.003023 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.278638 B = 9260.840197 C = 9615.035823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.115 4.115 12 C 0.104 3.896 13 N -0.630 5.630 14 C 0.715 3.285 15 O -0.599 6.599 16 N -0.748 5.748 17 C 0.150 3.850 18 C 0.080 3.920 19 H 0.064 0.936 20 C -0.148 4.148 21 C -0.121 4.121 22 C -0.158 4.158 23 C 0.060 3.940 24 O -0.373 6.373 25 C 0.123 3.877 26 H 0.269 0.731 27 H 0.382 0.618 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.395 0.605 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -19.806 -8.325 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.153 4.153 12 C -0.019 4.019 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.478 6.478 16 N -0.405 5.405 17 C 0.025 3.975 18 C 0.022 3.978 19 H 0.082 0.918 20 C -0.186 4.186 21 C -0.159 4.159 22 C -0.195 4.195 23 C -0.017 4.017 24 O -0.292 6.292 25 C 0.001 3.999 26 H 0.079 0.921 27 H 0.232 0.768 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.229 0.771 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.164 -19.582 -8.674 21.417 hybrid contribution 0.393 0.890 -0.133 0.982 sum 0.557 -18.692 -8.806 20.670 Atomic orbital electron populations 1.69713 1.05970 1.27762 1.49699 1.25081 0.95051 0.99757 0.93464 0.86355 0.80031 0.82829 0.77717 1.19634 1.20804 1.20777 1.21527 0.93652 0.90093 1.52188 0.91538 1.19513 0.86578 0.92008 0.81236 1.86101 1.51810 1.56612 1.44841 1.22759 0.97345 0.95144 1.00099 1.22268 0.92717 0.95024 0.91927 1.47944 1.50967 1.13010 1.24821 1.15500 0.80337 0.81486 0.80940 1.90881 1.44744 1.59568 1.52651 1.44989 1.55800 1.09062 1.30644 1.21110 0.98556 0.89310 0.88509 1.22370 0.97155 0.91648 0.86676 0.91826 1.22129 1.02688 0.96159 0.97667 1.21575 1.01088 0.95049 0.98176 1.22205 1.01697 1.00031 0.95602 1.22569 0.99315 0.81652 0.98151 1.88031 1.76646 1.19471 1.45029 1.22844 1.01421 0.77337 0.98269 0.92081 0.76766 0.90511 0.90671 0.91972 0.92741 0.77078 0.91064 0.90433 0.90508 0.90404 0.91328 0.91789 0.90955 0.90978 0.88806 0.93237 0.91817 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.15 10.97 55.43 0.61 -23.54 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.16 8.12 -34.44 -0.28 -14.43 16 8 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 9 C 0.25 6.05 0.85 -89.94 -0.08 5.98 16 10 O -0.58 -14.88 13.08 -35.23 -0.46 -15.34 16 11 C -0.12 -2.32 6.24 -24.46 -0.15 -2.47 16 12 C 0.10 1.87 6.58 -2.41 -0.02 1.86 16 13 N -0.63 -13.52 3.32 -176.10 -0.59 -14.11 16 14 C 0.72 15.12 8.49 -86.92 -0.74 14.38 16 15 O -0.60 -14.97 16.67 5.28 0.09 -14.88 16 16 N -0.75 -11.92 5.46 -65.22 -0.36 -12.28 16 17 C 0.15 2.01 5.34 -4.04 -0.02 1.98 16 18 C 0.08 0.81 2.68 -26.68 -0.07 0.73 16 19 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 20 C -0.15 -1.20 5.42 -26.59 -0.14 -1.34 16 21 C -0.12 -0.81 6.03 -26.54 -0.16 -0.97 16 22 C -0.16 -1.07 6.14 -26.59 -0.16 -1.23 16 23 C 0.06 0.48 6.84 37.20 0.25 0.74 16 24 O -0.37 -4.22 10.35 -35.23 -0.36 -4.58 16 25 C 0.12 3.08 5.23 -3.06 -0.02 3.07 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.38 9.96 7.45 45.56 0.34 10.30 16 28 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.79 7.29 -51.93 -0.38 0.41 16 32 H 0.40 5.49 6.95 -40.82 -0.28 5.21 16 33 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.74 7.81 -51.93 -0.41 1.33 16 44 H 0.06 1.71 7.93 -51.93 -0.41 1.30 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -31.28 351.35 -9.07 -40.35 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -6.60 Total: 13.38 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -1.68 Total: 10.04 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.33 Total: -49.93 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.74 Total: -34.80 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.28 -9.07 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591932291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.164 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds