Wall clock time and date at job start Tue Mar 31 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00258 * 2 1 4 4 H 1.48493 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47432 * 300.00580 * 3 2 1 6 6 H 1.48501 * 109.46693 * 60.00454 * 3 2 1 7 7 C 1.37878 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00272 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.64499 * 298.31613 * 9 7 2 11 11 C 1.55159 * 110.72245 * 174.98159 * 9 7 2 12 12 C 1.55132 * 101.48684 * 205.97001 * 11 9 7 13 13 N 1.47422 * 104.72087 * 37.29365 * 12 11 9 14 14 C 1.34777 * 125.64727 * 155.82223 * 13 12 11 15 15 O 1.21593 * 119.99953 * 179.68840 * 14 13 12 16 16 N 1.34773 * 120.00097 * 359.95968 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.52999 * 109.47528 * 180.02562 * 17 16 14 19 19 H 1.09005 * 109.47451 * 305.02276 * 18 17 16 20 20 C 1.53094 * 109.47922 * 185.00071 * 18 17 16 21 21 C 1.53180 * 109.16263 * 182.40189 * 20 18 17 22 22 C 1.53183 * 109.03157 * 56.97721 * 21 20 18 23 23 C 1.53087 * 109.16578 * 303.02150 * 22 21 20 24 24 O 1.42891 * 109.48362 * 65.05580 * 18 17 16 25 25 C 1.47020 * 108.70730 * 335.54988 * 13 12 11 26 26 H 0.97007 * 120.00171 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99615 * 61.68254 * 10 9 7 28 28 H 1.09005 * 111.00089 * 324.20875 * 11 9 7 29 29 H 1.09000 * 111.00555 * 88.05849 * 11 9 7 30 30 H 1.09001 * 110.49739 * 278.45195 * 12 11 9 31 31 H 1.09000 * 110.34355 * 156.05515 * 12 11 9 32 32 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 33 33 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 34 34 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 35 35 H 1.08998 * 109.52181 * 302.31128 * 20 18 17 36 36 H 1.08998 * 109.52289 * 62.50026 * 20 18 17 37 37 H 1.08994 * 109.54527 * 176.84238 * 21 20 18 38 38 H 1.09000 * 109.54509 * 297.02676 * 21 20 18 39 39 H 1.09006 * 109.52011 * 62.92870 * 22 21 20 40 40 H 1.09004 * 109.52061 * 183.04749 * 22 21 20 41 41 H 1.09002 * 109.47696 * 177.59093 * 23 22 21 42 42 H 1.08997 * 109.48015 * 297.61219 * 23 22 21 43 43 H 1.08999 * 109.88065 * 120.70222 * 25 13 12 44 44 H 1.08999 * 109.89017 * 241.71947 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.4501 -2.6186 1.1770 11 6 2.2283 -3.6974 -0.1281 12 6 1.3159 -4.7729 -0.7742 13 7 0.4641 -4.0246 -1.7164 14 6 -0.1422 -4.5381 -2.8051 15 8 -0.8293 -3.8255 -3.5112 16 7 0.0087 -5.8426 -3.1081 17 6 -0.6551 -6.4022 -4.2881 18 6 -0.3228 -7.8913 -4.4021 19 1 0.7593 -8.0228 -4.4085 20 6 -0.9125 -8.4480 -5.7006 21 6 -0.6276 -9.9511 -5.7785 22 6 -1.2078 -10.6345 -4.5364 23 6 -0.6067 -9.9933 -3.2829 24 8 -0.8814 -8.5909 -3.2884 25 6 0.3801 -2.6269 -1.2682 26 1 -0.4851 0.8401 0.0004 27 1 -0.2279 -1.9344 1.2626 28 1 3.0671 -3.4498 -0.7788 29 1 2.5785 -4.0220 0.8517 30 1 0.7043 -5.2606 -0.0150 31 1 1.9170 -5.5086 -1.3084 32 1 0.5568 -6.4111 -2.5447 33 1 -1.7336 -6.2772 -4.1917 34 1 -0.3076 -5.8826 -5.1810 35 1 -1.9895 -8.2803 -5.7129 36 1 -0.4550 -7.9460 -6.5531 37 1 -1.0930 -10.3646 -6.6731 38 1 0.4490 -10.1166 -5.8178 39 1 -2.2908 -10.5109 -4.5251 40 1 -0.9626 -11.6964 -4.5569 41 1 -1.0481 -10.4467 -2.3954 42 1 0.4715 -10.1526 -3.2746 43 1 0.7591 -1.9646 -2.0465 44 1 -0.6545 -2.3731 -1.0372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591932291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:12 Heat of formation + Delta-G solvation = -157.156587 kcal Electronic energy + Delta-G solvation = -24972.566963 eV Core-core repulsion = 21309.402740 eV Total energy + Delta-G solvation = -3663.164223 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33335 -40.34832 -39.09337 -36.06453 -35.91659 -34.55856 -34.22229 -32.66256 -31.47131 -29.58857 -28.12593 -26.64878 -25.06267 -24.17149 -23.09597 -21.49693 -21.39368 -20.72146 -19.27123 -18.87928 -17.62039 -17.41440 -16.91585 -16.86745 -16.62951 -16.18894 -15.82791 -15.38138 -15.20273 -15.07998 -14.76423 -14.67730 -14.11204 -14.02148 -13.65100 -13.56653 -13.49993 -13.31294 -13.06793 -12.85934 -12.52897 -12.33436 -12.24223 -12.21108 -12.07840 -11.97379 -11.64436 -11.36050 -11.21285 -11.16231 -10.65379 -10.40659 -10.28320 -10.25069 -9.39607 -8.25149 -6.41126 1.40709 1.43830 1.54808 1.65859 2.13541 2.38680 2.74452 3.01510 3.06027 3.69496 3.80577 3.92157 3.94671 4.04915 4.07341 4.14519 4.18255 4.27467 4.39172 4.50150 4.57256 4.60541 4.68900 4.73303 4.78025 4.88354 4.93950 5.06125 5.08287 5.13675 5.15467 5.21594 5.25202 5.36311 5.40661 5.47912 5.51023 5.75596 6.03854 6.17617 6.29131 6.66143 7.05131 7.28228 7.35756 7.55418 8.81192 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.034633 B = 0.003023 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.278638 B = 9260.840197 C = 9615.035823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.109 4.109 12 C 0.108 3.892 13 N -0.636 5.636 14 C 0.709 3.291 15 O -0.646 6.646 16 N -0.725 5.725 17 C 0.146 3.854 18 C 0.088 3.912 19 H 0.081 0.919 20 C -0.147 4.147 21 C -0.119 4.119 22 C -0.156 4.156 23 C 0.053 3.947 24 O -0.400 6.400 25 C 0.142 3.858 26 H 0.269 0.731 27 H 0.375 0.625 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.409 0.591 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.030 0.970 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 -22.078 -8.708 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.147 4.147 12 C -0.014 4.014 13 N -0.372 5.372 14 C 0.411 3.589 15 O -0.529 6.529 16 N -0.382 5.382 17 C 0.022 3.978 18 C 0.031 3.969 19 H 0.099 0.901 20 C -0.185 4.185 21 C -0.156 4.156 22 C -0.193 4.193 23 C -0.023 4.023 24 O -0.320 6.320 25 C 0.018 3.982 26 H 0.078 0.922 27 H 0.224 0.776 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.245 0.755 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.027 -21.937 -9.046 23.815 hybrid contribution -0.219 1.549 -0.022 1.565 sum 1.808 -20.387 -9.068 22.386 Atomic orbital electron populations 1.69826 1.07172 1.28354 1.50201 1.25852 0.95809 1.02936 0.93173 0.85400 0.79178 0.78943 0.77471 1.18728 1.21088 1.20329 1.21858 0.93947 0.91270 1.52223 0.91332 1.19735 0.87082 0.93650 0.80357 1.86092 1.51725 1.56266 1.45391 1.22757 0.96835 0.93608 1.01468 1.22435 0.92320 0.94826 0.91789 1.47891 1.51752 1.12021 1.25573 1.15751 0.79912 0.82795 0.80449 1.90842 1.46705 1.61180 1.54141 1.44843 1.55116 1.07065 1.31184 1.21308 0.97209 0.91881 0.87422 1.22288 0.98083 0.89119 0.87453 0.90139 1.22132 1.02013 0.97514 0.96887 1.21587 1.01883 0.93613 0.98544 1.22196 1.00992 1.01072 0.95075 1.22777 1.00365 0.80039 0.99090 1.87984 1.77197 1.21314 1.45524 1.22349 0.99026 0.79100 0.97727 0.92158 0.77621 0.89632 0.89071 0.91348 0.88118 0.75451 0.93036 0.90143 0.91559 0.89318 0.90257 0.90700 0.91984 0.89093 0.88287 0.91875 0.95173 0.95626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.05 10.97 21.45 0.24 -50.82 16 2 C 0.02 1.23 5.28 84.66 0.45 1.68 16 3 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.55 -29.45 8.12 25.60 0.21 -29.24 16 8 H 0.07 3.52 7.78 -2.91 -0.02 3.50 16 9 C 0.23 11.44 0.85 -10.35 -0.01 11.43 16 10 O -0.59 -30.22 13.08 -148.98 -1.95 -32.17 16 11 C -0.11 -4.16 6.24 32.07 0.20 -3.96 16 12 C 0.11 3.63 6.58 86.93 0.57 4.20 16 13 N -0.64 -27.20 3.32 -829.31 -2.76 -29.96 16 14 C 0.71 30.07 8.49 179.06 1.52 31.59 16 15 O -0.65 -33.31 16.67 -4.01 -0.07 -33.38 16 16 N -0.73 -22.20 5.46 -478.53 -2.61 -24.82 16 17 C 0.15 3.79 5.34 86.38 0.46 4.25 16 18 C 0.09 1.61 2.68 30.63 0.08 1.69 16 19 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 20 C -0.15 -2.09 5.42 30.69 0.17 -1.93 16 21 C -0.12 -1.25 6.03 30.72 0.19 -1.06 16 22 C -0.16 -1.72 6.14 30.68 0.19 -1.53 16 23 C 0.05 0.73 6.84 72.01 0.49 1.22 16 24 O -0.40 -8.31 10.35 -148.98 -1.54 -9.85 16 25 C 0.14 7.34 5.23 86.73 0.45 7.79 16 26 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 27 H 0.37 20.21 7.45 -74.06 -0.55 19.66 16 28 H 0.09 3.11 8.04 -2.38 -0.02 3.09 16 29 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.10 2.48 7.29 -2.39 -0.02 2.47 16 32 H 0.41 10.25 6.95 -92.71 -0.64 9.61 16 33 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 40 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.03 1.72 7.81 -2.39 -0.02 1.70 16 44 H 0.03 1.48 7.93 -2.39 -0.02 1.46 16 Total: -1.00 -70.00 351.35 -1.90 -71.89 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.20 Total: 38.24 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 4.97 Total: 26.14 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -5.14 Total: -105.59 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -3.56 Total: -75.40 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -70.00 -1.90 -71.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591932291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.264 kcal (2) G-P(sol) polarization free energy of solvation -69.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds