Wall clock time and date at job start Tue Mar 31 2020 03:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00349 * 2 1 4 4 H 1.48500 * 109.47180 * 270.00082 * 3 2 1 5 5 H 1.48504 * 109.47197 * 30.00059 * 3 2 1 6 6 H 1.48500 * 109.47441 * 149.99671 * 3 2 1 7 7 C 1.37879 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99746 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.88752 * 62.42720 * 9 7 2 11 11 C 1.55165 * 111.03438 * 186.33014 * 9 7 2 12 12 C 1.54337 * 103.01767 * 153.39655 * 11 9 7 13 13 N 1.47023 * 107.26664 * 338.13819 * 12 11 9 14 14 C 1.34776 * 125.64663 * 178.84862 * 13 12 11 15 15 O 1.21589 * 120.00024 * 179.68917 * 14 13 12 16 16 N 1.34777 * 120.00215 * 359.70050 * 14 13 12 17 17 C 1.46497 * 120.00267 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47195 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.47319 * 64.99855 * 18 17 16 20 20 C 1.42902 * 114.00186 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47230 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.50125 * 243.74617 * 21 20 19 23 23 C 1.52995 * 117.49977 * 175.08419 * 21 20 19 24 24 C 1.47426 * 108.70111 * 358.58917 * 13 12 11 25 25 H 0.96996 * 119.99616 * 359.97438 * 1 2 3 26 26 H 0.96700 * 113.99809 * 297.57189 * 10 9 7 27 27 H 1.08996 * 110.71641 * 271.95135 * 11 9 7 28 28 H 1.08996 * 110.72034 * 35.22811 * 11 9 7 29 29 H 1.08996 * 109.98424 * 218.66349 * 12 11 9 30 30 H 1.08997 * 109.77462 * 97.49640 * 12 11 9 31 31 H 0.96999 * 119.99691 * 359.97438 * 16 14 13 32 32 H 1.09001 * 109.47117 * 59.98914 * 17 16 14 33 33 H 1.09004 * 109.46581 * 299.99567 * 17 16 14 34 34 H 1.09002 * 109.47153 * 304.99547 * 18 17 16 35 35 H 1.09001 * 109.46832 * 184.99738 * 18 17 16 36 36 H 1.09001 * 109.46918 * 299.99649 * 20 19 18 37 37 H 1.08999 * 109.46857 * 59.99535 * 20 19 18 38 38 H 1.09010 * 115.55203 * 29.41501 * 21 20 19 39 39 H 1.08999 * 117.49418 * 0.02562 * 22 21 20 40 40 H 1.08999 * 117.50165 * 145.01850 * 22 21 20 41 41 H 1.08995 * 117.50504 * 214.97834 * 23 21 20 42 42 H 1.09002 * 117.50130 * 0.02562 * 23 21 20 43 43 H 1.08996 * 110.36655 * 143.19519 * 24 13 12 44 44 H 1.09001 * 110.36247 * 265.40342 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4614 -2.6316 -1.1832 11 6 2.2189 -3.7012 0.1609 12 6 1.3283 -4.7802 0.8126 13 7 0.2052 -4.0865 1.4598 14 6 -0.8082 -4.6796 2.1213 15 8 -1.6844 -4.0031 2.6243 16 7 -0.8502 -6.0227 2.2256 17 6 -1.9520 -6.6675 2.9442 18 6 -1.7615 -8.1853 2.9141 19 8 -0.5815 -8.5318 3.6418 20 6 -0.3099 -9.9344 3.6750 21 6 0.9692 -10.1874 4.4754 22 6 2.1613 -10.7908 3.7300 23 6 1.3698 -11.6426 4.7256 24 6 0.3744 -2.6342 1.2706 25 1 -0.4849 0.8400 0.0004 26 1 -0.2245 -1.9563 -1.2761 27 1 2.5840 -4.0345 -0.8106 28 1 3.0490 -3.4429 0.8182 29 1 1.8996 -5.3351 1.5567 30 1 0.9530 -5.4599 0.0477 31 1 -0.1513 -6.5624 1.8242 32 1 -2.8973 -6.4107 2.4661 33 1 -1.9624 -6.3227 3.9782 34 1 -1.6624 -8.5186 1.8811 35 1 -2.6251 -8.6690 3.3707 36 1 -1.1433 -10.4547 4.1471 37 1 -0.1806 -10.3036 2.6576 38 1 1.1817 -9.4644 5.2630 39 1 2.0344 -11.0072 2.6693 40 1 3.1581 -10.4651 4.0274 41 1 1.8462 -11.8771 5.6774 42 1 0.7223 -12.4198 4.3195 43 1 -0.5931 -2.1565 1.1163 44 1 0.8801 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591952603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:08 Heat of formation + Delta-G solvation = -121.965809 kcal Electronic energy + Delta-G solvation = -24489.044317 eV Core-core repulsion = 20827.406081 eV Total energy + Delta-G solvation = -3661.638236 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.23572 -39.55140 -39.01691 -37.59854 -36.02080 -35.54988 -34.21757 -32.01505 -30.47209 -29.42886 -27.67724 -26.77067 -24.40034 -23.31826 -23.20101 -21.56602 -21.44574 -21.02208 -19.26407 -18.81011 -17.99400 -17.48798 -17.04819 -16.83652 -16.70966 -16.23173 -16.15558 -15.39059 -15.26486 -15.22309 -14.74560 -14.58457 -14.24798 -13.90568 -13.68841 -13.50108 -13.30931 -13.15752 -12.82814 -12.52164 -12.48581 -12.36075 -12.31234 -12.22005 -12.07992 -11.98920 -11.35728 -11.30697 -11.19124 -11.14099 -10.65176 -10.43207 -10.31603 -10.18045 -9.30837 -8.23001 -6.40309 1.42871 1.44832 1.54733 1.72085 2.16604 2.39583 2.51329 2.97164 3.02917 3.13441 3.80251 3.81128 3.99068 3.99767 4.10268 4.16487 4.20275 4.21874 4.35349 4.37042 4.45087 4.58108 4.62826 4.68687 4.72595 4.77849 4.79823 4.86938 5.03860 5.08041 5.11384 5.25679 5.26754 5.31555 5.38701 5.47695 5.51822 5.77343 6.06659 6.20400 6.26112 6.67092 7.08029 7.28993 7.36361 7.58850 8.82233 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.002963 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.033753 B = 9447.437569 C =10067.698990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.233 3.767 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.109 3.891 13 N -0.634 5.634 14 C 0.708 3.292 15 O -0.647 6.647 16 N -0.726 5.726 17 C 0.138 3.862 18 C 0.061 3.939 19 O -0.406 6.406 20 C 0.092 3.908 21 C -0.172 4.172 22 C -0.181 4.181 23 C -0.162 4.162 24 C 0.128 3.872 25 H 0.269 0.731 26 H 0.372 0.628 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.408 0.592 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.044 0.956 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -23.128 5.508 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.394 6.394 11 C -0.147 4.147 12 C -0.014 4.014 13 N -0.371 5.371 14 C 0.410 3.590 15 O -0.530 6.530 16 N -0.383 5.383 17 C 0.014 3.986 18 C -0.015 4.015 19 O -0.326 6.326 20 C 0.016 3.984 21 C -0.190 4.190 22 C -0.218 4.218 23 C -0.199 4.199 24 C 0.004 3.996 25 H 0.078 0.922 26 H 0.221 0.779 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.244 0.756 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.063 0.937 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.155 -22.990 5.919 23.767 hybrid contribution -0.123 1.537 -0.041 1.542 sum 1.032 -21.453 5.878 22.268 Atomic orbital electron populations 1.69855 1.07202 1.28349 1.50065 1.25857 0.95764 1.02919 0.93126 0.85446 0.78682 0.78574 0.78267 1.19955 1.21255 1.18918 1.21793 0.93953 0.91188 1.52393 0.91244 1.19861 0.87170 0.93171 0.80577 1.86089 1.51449 1.56774 1.45071 1.22590 0.97154 0.93742 1.01260 1.22088 0.87180 0.95434 0.96651 1.47866 1.24424 1.08641 1.56162 1.15777 0.81251 0.82816 0.79155 1.90838 1.41522 1.64832 1.55789 1.44893 1.29768 1.03393 1.60266 1.21324 0.89333 0.91342 0.96574 1.22755 0.88892 0.92671 0.97227 1.87926 1.44798 1.24723 1.75188 1.22123 0.95913 0.81216 0.99172 1.22154 0.96086 0.97823 1.02984 1.23162 0.96189 1.03922 0.98516 1.23068 1.03140 0.92343 1.01359 1.22655 1.00098 0.77762 0.99061 0.92218 0.77907 0.89474 0.89405 0.89682 0.90859 0.75565 0.90187 0.92637 0.90840 0.89009 0.91654 0.91978 0.88506 0.87985 0.88660 0.87845 0.87389 0.93749 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.01 10.69 21.45 0.23 -50.79 16 2 C 0.02 1.29 5.29 84.65 0.45 1.74 16 3 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.56 -29.25 8.27 25.60 0.21 -29.04 16 8 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 9 C 0.23 11.45 0.87 -10.15 -0.01 11.44 16 10 O -0.59 -30.48 13.16 -148.98 -1.96 -32.44 16 11 C -0.11 -4.21 6.13 31.79 0.19 -4.01 16 12 C 0.11 3.66 6.15 86.73 0.53 4.20 16 13 N -0.63 -27.23 3.33 -829.75 -2.76 -29.99 16 14 C 0.71 30.26 8.49 179.05 1.52 31.78 16 15 O -0.65 -33.51 16.60 -3.99 -0.07 -33.58 16 16 N -0.73 -22.39 5.46 -478.54 -2.61 -25.00 16 17 C 0.14 3.49 6.06 86.38 0.52 4.01 16 18 C 0.06 1.01 6.07 71.98 0.44 1.45 16 19 O -0.41 -8.12 10.29 -148.98 -1.53 -9.65 16 20 C 0.09 1.31 6.22 71.98 0.45 1.76 16 21 C -0.17 -2.58 6.05 -10.80 -0.07 -2.65 16 22 C -0.18 -2.31 10.18 30.62 0.31 -1.99 16 23 C -0.16 -1.73 10.25 30.62 0.31 -1.42 16 24 C 0.13 6.55 5.38 86.85 0.47 7.01 16 25 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.37 20.38 7.56 -74.06 -0.56 19.82 16 27 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.09 3.16 8.03 -2.39 -0.02 3.14 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.41 10.51 7.46 -92.71 -0.69 9.82 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.73 7.87 -2.39 -0.02 0.71 16 38 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.10 1.15 8.03 -2.39 -0.02 1.13 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.04 2.60 7.33 -2.39 -0.02 2.59 16 44 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16 Total: -1.00 -69.71 363.93 -1.59 -71.30 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -0.25 Total: 41.48 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 5.33 Total: 24.27 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -5.14 Total: -105.77 kcal Atomic # 8 Polarization: -72.11 SS G_CDS: -3.56 Total: -75.67 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -69.71 -1.59 -71.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591952603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.664 kcal (2) G-P(sol) polarization free energy of solvation -69.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds