Wall clock time and date at job start Tue Mar 31 2020 03:56:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86805 * 119.99572 * 2 1
4 4 H 1.48507 * 109.46894 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47053 * 299.99531 * 3 2 1
6 6 H 1.48500 * 109.46923 * 60.00096 * 3 2 1
7 7 C 1.37867 * 120.00136 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00392 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00152 * 0.02562 * 7 2 1
10 10 O 1.42896 * 110.88503 * 303.88188 * 9 7 2
11 11 C 1.55155 * 111.00523 * 180.02562 * 9 7 2
12 12 C 1.54323 * 102.94243 * 206.38647 * 11 9 7
13 13 N 1.47023 * 107.27321 * 22.18909 * 12 11 9
14 14 C 1.34775 * 125.65250 * 181.02093 * 13 12 11
15 15 O 1.21583 * 120.00144 * 180.02562 * 14 13 12
16 16 N 1.34777 * 119.99585 * 0.02700 * 14 13 12
17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13
18 18 C 1.53004 * 109.47198 * 180.27868 * 17 16 14
19 19 O 1.42903 * 109.46927 * 64.99809 * 18 17 16
20 20 C 1.42894 * 113.99688 * 179.97438 * 19 18 17
21 21 C 1.53000 * 109.47257 * 180.02562 * 20 19 18
22 22 C 1.53005 * 117.49914 * 243.62573 * 21 20 19
23 23 C 1.52998 * 117.50158 * 175.00234 * 21 20 19
24 24 C 1.47428 * 108.69894 * 1.29228 * 13 12 11
25 25 H 0.97004 * 120.00444 * 0.02562 * 1 2 3
26 26 H 0.96702 * 114.00348 * 56.11744 * 10 9 7
27 27 H 1.08996 * 110.72038 * 88.02082 * 11 9 7
28 28 H 1.08999 * 110.87433 * 324.81731 * 11 9 7
29 29 H 1.09002 * 109.88274 * 262.77248 * 12 11 9
30 30 H 1.08996 * 109.88558 * 141.61083 * 12 11 9
31 31 H 0.97001 * 120.00485 * 0.02562 * 16 14 13
32 32 H 1.09009 * 109.47454 * 300.27637 * 17 16 14
33 33 H 1.08998 * 109.47492 * 60.27932 * 17 16 14
34 34 H 1.09000 * 109.47275 * 184.99914 * 18 17 16
35 35 H 1.08998 * 109.46700 * 305.00136 * 18 17 16
36 36 H 1.08998 * 109.47845 * 300.00480 * 20 19 18
37 37 H 1.08999 * 109.47565 * 60.00461 * 20 19 18
38 38 H 1.08996 * 115.55034 * 29.32598 * 21 20 19
39 39 H 1.08997 * 117.49971 * 359.97438 * 22 21 20
40 40 H 1.09003 * 117.50051 * 145.01556 * 22 21 20
41 41 H 1.09003 * 117.50039 * 214.97567 * 23 21 20
42 42 H 1.08999 * 117.49760 * 0.02562 * 23 21 20
43 43 H 1.09002 * 110.36762 * 94.48443 * 24 13 12
44 44 H 1.09008 * 110.36102 * 216.80205 * 24 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8902 2.3965 1.2125
7 6 2.0045 -1.1939 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0005
10 8 0.3514 -2.5679 1.1086
11 6 2.2275 -3.7049 0.0018
12 6 1.3984 -4.8217 -0.6667
13 7 0.3475 -4.1691 -1.4613
14 6 -0.5986 -4.8018 -2.1832
15 8 -1.4211 -4.1574 -2.8049
16 7 -0.6329 -6.1487 -2.2157
17 6 -1.6650 -6.8364 -2.9955
18 6 -1.4843 -8.3496 -2.8584
19 8 -1.7149 -8.7358 -1.5020
20 6 -1.5713 -10.1376 -1.2645
21 6 -1.8400 -10.4349 0.2121
22 6 -0.6831 -10.9952 1.0418
23 6 -1.8506 -11.9017 0.6468
24 6 0.5040 -2.7080 -1.3429
25 1 -0.4851 0.8400 -0.0004
26 1 -0.2782 -1.8351 1.1502
27 1 2.4967 -3.9820 1.0210
28 1 3.1192 -3.4832 -0.5844
29 1 0.9465 -5.4554 0.0964
30 1 2.0374 -5.4193 -1.3168
31 1 0.0230 -6.6628 -1.7194
32 1 -2.6500 -6.5531 -2.6244
33 1 -1.5768 -6.5536 -4.0444
34 1 -2.1951 -8.8607 -3.5076
35 1 -0.4688 -8.6216 -3.1460
36 1 -2.2841 -10.6855 -1.8807
37 1 -0.5577 -10.4473 -1.5191
38 1 -2.5344 -9.7576 0.7092
39 1 0.2694 -11.1525 0.5357
40 1 -0.6161 -10.6865 2.0851
41 1 -2.5518 -12.1894 1.4303
42 1 -1.6657 -12.6550 -0.1190
43 1 1.0956 -2.3213 -2.1728
44 1 -0.4718 -2.2231 -1.3132
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000591952604.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:56:12
Heat of formation + Delta-G solvation = -122.119590 kcal
Electronic energy + Delta-G solvation = -24526.324498 eV
Core-core repulsion = 20864.679593 eV
Total energy + Delta-G solvation = -3661.644904 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.23344 -39.54926 -39.01163 -37.60574 -36.05784 -35.55875 -34.14307 -32.02748
-30.47033 -29.46677 -27.68019 -26.77161 -24.39305 -23.31610 -23.20127 -21.57194
-21.43188 -21.02113 -19.30404 -18.84223 -18.00333 -17.45189 -17.09164 -16.88239
-16.63078 -16.21507 -16.16769 -15.42898 -15.24245 -15.15654 -14.78177 -14.61482
-14.25431 -13.85751 -13.71743 -13.48410 -13.34270 -13.14407 -12.86127 -12.52934
-12.46693 -12.35662 -12.29256 -12.17832 -12.09198 -11.99117 -11.36980 -11.31766
-11.22826 -11.14340 -10.64575 -10.43172 -10.33348 -10.17601 -9.30353 -8.24470
-6.41719 1.42065 1.45023 1.56365 1.71145 2.16993 2.39092 2.51800
2.97038 3.01560 3.13282 3.80042 3.81940 3.98536 3.99941 4.13216
4.15368 4.20761 4.22558 4.34953 4.36919 4.45192 4.57678 4.63018
4.68225 4.72646 4.77437 4.79125 4.87168 5.03276 5.05666 5.10487
5.25164 5.26406 5.31385 5.39718 5.46035 5.51658 5.77909 6.03473
6.19422 6.27303 6.66079 7.07880 7.31080 7.40172 7.58415 8.81447
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.023723 B = 0.003037 C = 0.002831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1179.997883 B = 9216.307291 C = 9889.011699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C 0.022 3.978
3 Si 0.968 3.032
4 H -0.262 1.262
5 H -0.283 1.283
6 H -0.280 1.280
7 C -0.553 4.553
8 H 0.072 0.928
9 C 0.231 3.769
10 O -0.591 6.591
11 C -0.110 4.110
12 C 0.109 3.891
13 N -0.633 5.633
14 C 0.708 3.292
15 O -0.647 6.647
16 N -0.726 5.726
17 C 0.138 3.862
18 C 0.061 3.939
19 O -0.409 6.409
20 C 0.093 3.907
21 C -0.175 4.175
22 C -0.181 4.181
23 C -0.161 4.161
24 C 0.124 3.876
25 H 0.270 0.730
26 H 0.377 0.623
27 H 0.084 0.916
28 H 0.092 0.908
29 H 0.067 0.933
30 H 0.091 0.909
31 H 0.408 0.592
32 H 0.050 0.950
33 H 0.085 0.915
34 H 0.092 0.908
35 H 0.077 0.923
36 H 0.066 0.934
37 H 0.064 0.936
38 H 0.094 0.906
39 H 0.104 0.896
40 H 0.093 0.907
41 H 0.102 0.898
42 H 0.110 0.890
43 H 0.045 0.955
44 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.030 -23.306 -2.848 23.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.178 4.178
3 Si 0.793 3.207
4 H -0.185 1.185
5 H -0.209 1.209
6 H -0.206 1.206
7 C -0.591 4.591
8 H 0.090 0.910
9 C 0.191 3.809
10 O -0.400 6.400
11 C -0.148 4.148
12 C -0.013 4.013
13 N -0.370 5.370
14 C 0.410 3.590
15 O -0.530 6.530
16 N -0.383 5.383
17 C 0.014 3.986
18 C -0.016 4.016
19 O -0.329 6.329
20 C 0.017 3.983
21 C -0.193 4.193
22 C -0.218 4.218
23 C -0.197 4.197
24 C 0.001 3.999
25 H 0.080 0.920
26 H 0.227 0.773
27 H 0.102 0.898
28 H 0.110 0.890
29 H 0.085 0.915
30 H 0.109 0.891
31 H 0.244 0.756
32 H 0.069 0.931
33 H 0.103 0.897
34 H 0.110 0.890
35 H 0.095 0.905
36 H 0.084 0.916
37 H 0.082 0.918
38 H 0.112 0.888
39 H 0.122 0.878
40 H 0.111 0.889
41 H 0.121 0.879
42 H 0.128 0.872
43 H 0.063 0.937
44 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 0.518 -23.230 -3.080 23.439
hybrid contribution -0.122 1.574 -0.021 1.579
sum 0.396 -21.655 -3.101 21.880
Atomic orbital electron populations
1.69706 1.07328 1.28435 1.50494 1.25888 0.95756 1.03072 0.93104
0.85352 0.79177 0.78710 0.77437 1.18544 1.20917 1.20604 1.21865
0.94086 0.91101 1.52052 0.90957 1.19912 0.86224 0.93374 0.81425
1.86051 1.51190 1.52575 1.50182 1.22599 0.97443 0.93332 1.01408
1.22086 0.88971 0.95858 0.94398 1.47833 1.31164 1.08207 1.49769
1.15784 0.80786 0.82704 0.79750 1.90833 1.43623 1.66990 1.51583
1.44896 1.35659 1.03049 1.54693 1.21339 0.90629 0.90728 0.95926
1.22776 1.02513 0.92394 0.83888 1.87944 1.92043 1.24927 1.27995
1.22116 1.00800 0.81141 0.94256 1.22165 1.03523 0.98139 0.95463
1.23152 0.93922 1.03902 1.00837 1.23059 1.01263 0.91725 1.03699
1.22756 0.99574 0.77631 0.99981 0.92049 0.77283 0.89763 0.88998
0.91480 0.89092 0.75561 0.93143 0.89709 0.89000 0.90511 0.91591
0.91770 0.88814 0.87797 0.88871 0.87940 0.87190 0.93721 0.94572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -51.36 10.72 21.44 0.23 -51.13 16
2 C 0.02 1.17 5.30 84.65 0.45 1.62 16
3 Si 0.97 42.21 29.54 68.60 2.03 44.23 16
4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16
5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16
6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16
7 C -0.55 -29.04 8.25 25.60 0.21 -28.83 16
8 H 0.07 3.64 7.77 -2.91 -0.02 3.61 16
9 C 0.23 11.48 0.89 -10.07 -0.01 11.47 16
10 O -0.59 -31.75 13.19 -148.98 -1.97 -33.72 16
11 C -0.11 -4.22 6.12 31.78 0.19 -4.03 16
12 C 0.11 3.68 6.15 86.73 0.53 4.21 16
13 N -0.63 -27.20 3.32 -829.30 -2.76 -29.96 16
14 C 0.71 30.28 8.49 179.05 1.52 31.80 16
15 O -0.65 -33.54 16.60 -3.98 -0.07 -33.60 16
16 N -0.73 -22.41 5.46 -478.53 -2.61 -25.03 16
17 C 0.14 3.48 6.06 86.38 0.52 4.00 16
18 C 0.06 1.00 6.07 71.98 0.44 1.44 16
19 O -0.41 -8.56 10.29 -148.98 -1.53 -10.09 16
20 C 0.09 1.38 6.22 71.98 0.45 1.83 16
21 C -0.17 -2.84 6.06 -10.79 -0.07 -2.90 16
22 C -0.18 -2.51 10.18 30.60 0.31 -2.20 16
23 C -0.16 -1.85 10.25 30.59 0.31 -1.54 16
24 C 0.12 6.36 5.65 86.93 0.49 6.85 16
25 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16
26 H 0.38 21.43 6.93 -74.06 -0.51 20.92 16
27 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16
28 H 0.09 3.22 8.02 -2.39 -0.02 3.20 16
29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16
30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16
31 H 0.41 10.53 7.46 -92.71 -0.69 9.84 16
32 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16
33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
37 H 0.06 0.76 7.88 -2.39 -0.02 0.74 16
38 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
39 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16
40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16
41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
42 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16
43 H 0.04 2.33 8.04 -2.39 -0.02 2.31 16
44 H 0.04 2.13 7.64 -2.38 -0.02 2.12 16
Total: -1.00 -70.73 363.90 -1.53 -72.26
By element:
Atomic # 1 Polarization: 43.52 SS G_CDS: -0.20 Total: 43.32 kcal
Atomic # 6 Polarization: 18.37 SS G_CDS: 5.36 Total: 23.72 kcal
Atomic # 7 Polarization: -100.98 SS G_CDS: -5.14 Total: -106.12 kcal
Atomic # 8 Polarization: -73.85 SS G_CDS: -3.56 Total: -77.41 kcal
Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal
Total: -70.73 -1.53 -72.26 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591952604.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.863 kcal
(2) G-P(sol) polarization free energy of solvation -70.730 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.592 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.527 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.120 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds