Wall clock time and date at job start Tue Mar 31 2020 04:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.43952 * 2 1 4 4 N 1.46503 * 109.47131 * 298.90707 * 3 2 1 5 5 C 1.34777 * 120.00329 * 179.97438 * 4 3 2 6 6 O 1.21589 * 119.99456 * 0.02562 * 5 4 3 7 7 N 1.34768 * 120.00140 * 180.02562 * 5 4 3 8 8 C 1.47029 * 125.64867 * 359.97438 * 7 5 4 9 9 C 1.54328 * 107.27050 * 178.97515 * 8 7 5 10 10 C 1.55158 * 102.94232 * 337.80985 * 9 8 7 11 11 O 1.42904 * 111.03639 * 277.41213 * 10 9 8 12 12 C 1.50701 * 111.00202 * 153.57675 * 10 9 8 13 13 H 1.07990 * 120.00058 * 4.48822 * 12 10 9 14 14 C 1.37878 * 119.99824 * 184.48708 * 12 10 9 15 15 N 1.31522 * 120.00083 * 5.27674 * 14 12 10 16 16 Si 1.86792 * 120.00231 * 185.27334 * 14 12 10 17 17 H 1.48504 * 109.47115 * 84.99427 * 16 14 12 18 18 H 1.48501 * 109.47563 * 204.99983 * 16 14 12 19 19 H 1.48502 * 109.47235 * 325.00256 * 16 14 12 20 20 C 1.47430 * 125.64945 * 180.02562 * 7 5 4 21 21 C 1.54818 * 110.60221 * 122.62427 * 2 1 3 22 22 C 1.54988 * 102.09435 * 97.84742 * 21 2 1 23 23 O 1.44377 * 103.49242 * 37.02624 * 22 21 2 24 24 C 1.43745 * 106.97554 * 319.94055 * 23 22 21 25 25 H 1.09001 * 109.47122 * 59.29953 * 1 2 3 26 26 H 1.08996 * 109.46793 * 179.29992 * 1 2 3 27 27 H 1.09001 * 109.47023 * 299.30177 * 1 2 3 28 28 H 1.09005 * 109.47637 * 178.90983 * 3 2 1 29 29 H 1.09004 * 109.47305 * 58.90800 * 3 2 1 30 30 H 0.97003 * 119.99465 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.88198 * 298.39481 * 8 7 5 32 32 H 1.09001 * 109.87765 * 59.56116 * 8 7 5 33 33 H 1.08999 * 110.71852 * 96.16907 * 9 8 7 34 34 H 1.08993 * 110.71955 * 219.44611 * 9 8 7 35 35 H 0.96698 * 114.00230 * 166.78342 * 11 10 9 36 36 H 0.97001 * 120.00077 * 180.02562 * 15 14 12 37 37 H 1.09000 * 110.36168 * 322.93304 * 20 7 5 38 38 H 1.08990 * 110.36444 * 85.14641 * 20 7 5 39 39 H 1.09001 * 110.90435 * 216.04978 * 21 2 1 40 40 H 1.09002 * 110.90405 * 339.65062 * 21 2 1 41 41 H 1.08997 * 110.62087 * 278.52452 * 22 21 2 42 42 H 1.09004 * 110.61641 * 155.52561 * 22 21 2 43 43 H 1.09002 * 109.87675 * 267.08686 * 24 23 22 44 44 H 1.08993 * 110.00734 * 146.00564 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4336 0.0000 4 7 1.6092 2.1244 -1.2091 5 6 1.9599 3.4078 -1.4245 6 8 2.6545 3.9921 -0.6155 7 7 1.5408 4.0433 -2.5366 8 6 0.7012 3.4589 -3.5927 9 6 0.4576 4.5600 -4.6462 10 6 0.7024 5.8667 -3.8462 11 8 -0.4620 6.2417 -3.1075 12 6 1.1435 6.9832 -4.7572 13 1 1.1788 6.8266 -5.8251 14 6 1.5019 8.2045 -4.2273 15 7 1.5590 8.3642 -2.9230 16 14 1.9065 9.6324 -5.3615 17 1 0.6527 10.3281 -5.7482 18 1 2.8042 10.5840 -4.6588 19 1 2.5841 9.1203 -6.5797 20 6 1.8491 5.4395 -2.8962 21 6 2.0748 -0.7813 1.2205 22 6 2.3827 -2.1703 0.6058 23 8 2.8780 -1.8529 -0.7127 24 6 2.0694 -0.7766 -1.2168 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3633 -1.0276 -0.0126 27 1 -0.3633 0.5030 0.8962 28 1 3.1540 1.4154 0.0196 29 1 1.6939 1.9595 0.8800 30 1 1.0548 1.6582 -1.8543 31 1 1.2163 2.6147 -4.0511 32 1 -0.2495 3.1317 -3.1718 33 1 1.1685 4.4718 -5.4677 34 1 -0.5671 4.5203 -5.0156 35 1 -0.3026 6.9255 -2.4426 36 1 1.8108 9.2236 -2.5502 37 1 1.8577 6.0675 -2.0054 38 1 2.8094 5.4959 -3.4086 39 1 2.9823 -0.3167 1.6062 40 1 1.3180 -0.8604 2.0010 41 1 1.4755 -2.7710 0.5407 42 1 3.1455 -2.6872 1.1882 43 1 1.2392 -1.1777 -1.7982 44 1 2.6732 -0.1168 -1.8397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591960854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:35 Heat of formation + Delta-G solvation = -149.361053 kcal Electronic energy + Delta-G solvation = -25326.778375 eV Core-core repulsion = 21663.952192 eV Total energy + Delta-G solvation = -3662.826183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50727 -40.64043 -39.07512 -36.56583 -36.01808 -34.23182 -33.87588 -31.73143 -30.54080 -29.54646 -28.02869 -27.19312 -26.20972 -24.26636 -23.33949 -21.48732 -21.01238 -20.50036 -19.24240 -18.82141 -17.39252 -17.26672 -16.88049 -16.81928 -16.70374 -16.22168 -15.97407 -15.52526 -15.45436 -14.80291 -14.58729 -14.44502 -14.20001 -14.03256 -13.70696 -13.49920 -13.44757 -13.28894 -12.85659 -12.80723 -12.54064 -12.39632 -12.32060 -12.23395 -12.07203 -11.91077 -11.79967 -11.57746 -11.32851 -11.19459 -10.65654 -10.63235 -10.30806 -10.20785 -9.33302 -8.22793 -6.39239 1.42865 1.44439 1.53622 1.67067 2.14779 2.39480 2.99061 3.02529 3.05772 3.42537 3.60265 3.80757 3.81704 4.07048 4.10802 4.18757 4.20457 4.31413 4.35069 4.59327 4.61137 4.64884 4.67387 4.76955 4.78092 4.85429 4.87890 4.98642 5.07441 5.08029 5.11257 5.13217 5.30126 5.30586 5.36860 5.45798 5.47533 5.77068 5.91960 6.07616 6.18066 6.67365 7.05506 7.27442 7.35562 7.56383 8.82216 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.035142 B = 0.003200 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.565894 B = 8748.724057 C = 8916.975567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 C 0.155 3.845 4 N -0.727 5.727 5 C 0.709 3.291 6 O -0.646 6.646 7 N -0.634 5.634 8 C 0.106 3.894 9 C -0.111 4.111 10 C 0.233 3.767 11 O -0.584 6.584 12 C -0.555 4.555 13 H 0.069 0.931 14 C 0.026 3.974 15 N -0.914 5.914 16 Si 0.963 3.037 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.129 3.871 21 C -0.141 4.141 22 C 0.044 3.956 23 O -0.403 6.403 24 C 0.052 3.948 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.407 0.593 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.370 0.630 36 H 0.268 0.732 37 H 0.044 0.956 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 -20.621 4.435 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C 0.031 3.969 4 N -0.385 5.385 5 C 0.411 3.589 6 O -0.528 6.528 7 N -0.371 5.371 8 C -0.016 4.016 9 C -0.148 4.148 10 C 0.192 3.808 11 O -0.391 6.391 12 C -0.594 4.594 13 H 0.087 0.913 14 C -0.175 4.175 15 N -0.553 5.553 16 Si 0.789 3.211 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.190 1.190 20 C 0.006 3.994 21 C -0.179 4.179 22 C -0.031 4.031 23 O -0.322 6.322 24 C -0.025 4.025 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.244 0.756 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.218 0.782 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.808 -20.698 4.719 21.414 hybrid contribution 0.426 1.776 -0.096 1.829 sum -2.383 -18.922 4.623 19.624 Atomic orbital electron populations 1.21876 0.91343 1.03301 1.02854 1.22159 0.98025 0.92900 0.96793 1.21232 0.98288 0.91080 0.86264 1.44938 1.57213 1.10200 1.26102 1.15750 0.80145 0.82071 0.80918 1.90853 1.45774 1.68075 1.48116 1.47895 1.53724 1.14499 1.20949 1.22129 0.94539 0.96772 0.88110 1.22596 1.02949 0.92272 0.97010 1.19860 0.81426 0.91871 0.87624 1.86115 1.36736 1.61066 1.55156 1.21781 1.45923 0.97474 0.94173 0.91327 1.25827 0.93752 1.01411 0.96528 1.69898 1.48048 1.25526 1.11819 0.85490 0.78011 0.78674 0.78959 1.19988 1.21330 1.18978 1.22679 0.99048 0.79085 0.98627 1.23224 1.02545 0.95139 0.96969 1.23742 1.00560 0.96281 0.82564 1.88859 1.57280 1.53183 1.32924 1.23383 0.95262 0.88345 0.95505 0.92226 0.90136 0.91713 0.93086 0.92350 0.75567 0.89306 0.90665 0.89393 0.89508 0.78228 0.92322 0.93754 0.94489 0.90644 0.87618 0.90387 0.87814 0.90235 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.10 71.98 0.58 -1.19 16 2 C -0.10 -1.60 0.68 -51.19 -0.03 -1.63 16 3 C 0.16 3.83 4.35 86.38 0.38 4.21 16 4 N -0.73 -20.56 4.78 -478.53 -2.29 -22.85 16 5 C 0.71 28.86 8.49 179.06 1.52 30.38 16 6 O -0.65 -32.58 16.60 -4.00 -0.07 -32.65 16 7 N -0.63 -25.91 3.33 -829.73 -2.76 -28.67 16 8 C 0.11 3.35 6.15 86.73 0.53 3.88 16 9 C -0.11 -4.08 6.13 31.78 0.19 -3.88 16 10 C 0.23 11.18 0.86 -10.15 -0.01 11.17 16 11 O -0.58 -29.66 13.14 -148.98 -1.96 -31.62 16 12 C -0.56 -28.96 8.26 25.60 0.21 -28.75 16 13 H 0.07 3.45 7.79 -2.92 -0.02 3.43 16 14 C 0.03 1.37 5.32 84.65 0.45 1.82 16 15 N -0.91 -50.58 10.80 21.45 0.23 -50.35 16 16 Si 0.96 42.17 29.54 68.60 2.03 44.19 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 C 0.13 6.43 5.35 86.86 0.46 6.89 16 21 C -0.14 -1.87 6.27 31.90 0.20 -1.67 16 22 C 0.04 0.58 7.72 72.66 0.56 1.14 16 23 O -0.40 -8.21 11.52 -148.98 -1.72 -9.92 16 24 C 0.05 0.91 6.55 72.36 0.47 1.39 16 25 H 0.06 0.81 6.99 -2.39 -0.02 0.79 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 1.43 8.13 -2.38 -0.02 1.41 16 29 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.41 9.01 6.09 -92.71 -0.56 8.44 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 3.04 8.03 -2.39 -0.02 3.02 16 34 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.37 19.79 7.71 -74.06 -0.57 19.22 16 36 H 0.27 14.27 8.31 -92.71 -0.77 13.49 16 37 H 0.04 2.55 7.27 -2.39 -0.02 2.53 16 38 H 0.04 1.94 8.03 -2.39 -0.02 1.92 16 39 H 0.07 1.14 7.86 -2.39 -0.02 1.12 16 40 H 0.11 0.98 7.87 -2.39 -0.02 0.96 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.11 7.69 -2.39 -0.02 1.09 16 44 H 0.07 1.50 7.40 -2.39 -0.02 1.48 16 Total: -1.00 -69.36 349.55 -1.13 -70.49 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.13 Total: 37.60 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 5.52 Total: 23.77 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -4.82 Total: -101.87 kcal Atomic # 8 Polarization: -70.45 SS G_CDS: -3.74 Total: -74.19 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -69.36 -1.13 -70.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591960854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.868 kcal (2) G-P(sol) polarization free energy of solvation -69.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds