Wall clock time and date at job start Tue Mar 31 2020 04:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.82726 * 2 1 4 4 N 1.46498 * 109.47191 * 305.70286 * 3 2 1 5 5 C 1.34778 * 120.00411 * 180.02562 * 4 3 2 6 6 O 1.21588 * 119.99371 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00291 * 179.97438 * 5 4 3 8 8 C 1.47426 * 125.64968 * 359.95450 * 7 5 4 9 9 C 1.55118 * 104.94495 * 204.03960 * 8 7 5 10 10 C 1.55154 * 101.48474 * 323.22202 * 9 8 7 11 11 O 1.42896 * 110.72198 * 276.82816 * 10 9 8 12 12 C 1.50702 * 110.71956 * 153.73211 * 10 9 8 13 13 H 1.08002 * 120.00299 * 2.44550 * 12 10 9 14 14 C 1.37884 * 119.99942 * 182.16109 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.47019 * 125.65076 * 179.97438 * 7 5 4 21 21 C 1.54385 * 109.83194 * 120.89040 * 2 1 3 22 22 C 1.55301 * 102.25725 * 98.24278 * 21 2 1 23 23 C 1.54947 * 100.94235 * 34.13532 * 22 21 2 24 24 O 1.43238 * 109.82961 * 239.11183 * 2 1 3 25 25 H 1.08999 * 109.46846 * 59.29845 * 1 2 3 26 26 H 1.09005 * 109.47433 * 179.29752 * 1 2 3 27 27 H 1.09000 * 109.46926 * 299.30165 * 1 2 3 28 28 H 1.09000 * 109.47028 * 185.69977 * 3 2 1 29 29 H 1.08996 * 109.47078 * 65.69892 * 3 2 1 30 30 H 0.96999 * 119.99929 * 359.97438 * 4 3 2 31 31 H 1.09001 * 110.36602 * 323.00573 * 8 7 5 32 32 H 1.09000 * 110.36725 * 85.21080 * 8 7 5 33 33 H 1.09005 * 111.16464 * 205.12953 * 9 8 7 34 34 H 1.08998 * 110.93689 * 81.21185 * 9 8 7 35 35 H 0.96700 * 114.00666 * 177.55588 * 11 10 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.88427 * 59.48270 * 20 7 5 38 38 H 1.09008 * 110.01210 * 298.39333 * 20 7 5 39 39 H 1.08996 * 110.85044 * 216.43962 * 21 2 1 40 40 H 1.08999 * 110.84490 * 340.05138 * 21 2 1 41 41 H 1.09001 * 111.12854 * 152.05376 * 22 21 2 42 42 H 1.08998 * 111.12741 * 276.17780 * 22 21 2 43 43 H 1.08994 * 110.31094 * 82.46678 * 23 22 21 44 44 H 1.08994 * 110.31499 * 204.54618 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 7 1.4563 2.1720 -1.1216 5 6 1.7709 3.4672 -1.3220 6 8 2.5462 4.0275 -0.5715 7 7 1.2261 4.1411 -2.3541 8 6 0.2770 3.5872 -3.3368 9 6 0.4372 4.4801 -4.5950 10 6 0.6655 5.8756 -3.9565 11 8 -0.5809 6.4852 -3.6147 12 6 1.4546 6.7636 -4.8838 13 1 1.7416 6.4045 -5.8611 14 6 1.8053 8.0366 -4.4867 15 7 1.4559 8.4738 -3.2966 16 14 2.7769 9.1399 -5.6391 17 1 3.0430 8.4175 -6.9088 18 1 1.9941 10.3693 -5.9242 19 1 4.0653 9.5105 -5.0005 20 6 1.4802 5.5505 -2.6868 21 6 2.0537 -0.7456 1.2463 22 6 2.3703 -2.1558 0.6780 23 6 2.8436 -1.7968 -0.7531 24 8 2.0159 -0.6917 -1.1563 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3634 -1.0276 -0.0126 27 1 -0.3633 0.5030 0.8962 28 1 3.1341 1.4342 -0.1021 29 1 1.7743 1.9245 0.9366 30 1 0.8380 1.7249 -1.7205 31 1 0.5319 2.5532 -3.5692 32 1 -0.7426 3.6493 -2.9562 33 1 -0.4684 4.4714 -5.2017 34 1 1.3023 4.1732 -5.1828 35 1 -0.4924 7.3435 -3.1781 36 1 1.7030 9.3692 -3.0171 37 1 2.5425 5.7002 -2.8796 38 1 1.1587 6.1914 -1.8657 39 1 2.9562 -0.2710 1.6315 40 1 1.2846 -0.8015 2.0166 41 1 3.1660 -2.6385 1.2454 42 1 1.4762 -2.7787 0.6520 43 1 3.8923 -1.5003 -0.7415 44 1 2.6979 -2.6438 -1.4234 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591980041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:53 Heat of formation + Delta-G solvation = -124.587086 kcal Electronic energy + Delta-G solvation = -25293.413206 eV Core-core repulsion = 21631.661303 eV Total energy + Delta-G solvation = -3661.751903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31114 -39.31855 -37.31878 -34.68134 -34.19904 -32.60640 -32.14899 -31.36553 -29.84171 -27.81553 -26.98546 -25.82111 -24.49847 -22.61565 -21.98700 -20.30479 -19.60446 -19.34037 -17.64098 -17.05003 -16.67173 -15.97832 -15.85002 -15.33038 -14.93134 -14.82997 -14.31633 -14.07815 -13.94726 -13.32834 -13.09483 -12.91771 -12.84790 -12.76588 -12.62966 -12.27019 -12.01239 -11.95026 -11.60747 -11.40372 -11.34696 -11.09235 -11.02005 -11.01949 -10.75659 -10.59548 -10.43748 -10.12061 -9.76117 -9.54674 -9.28203 -8.74206 -8.63730 -8.26442 -7.68096 -6.24636 -4.32751 3.14996 3.23925 3.31992 3.35666 3.54474 3.82849 4.14427 4.30024 4.42036 4.48850 4.60189 4.74374 4.83764 4.96062 5.03336 5.29262 5.38009 5.40990 5.44924 5.47307 5.53280 5.60336 5.69161 5.76692 5.77461 5.82914 5.86427 6.02574 6.08172 6.16684 6.56258 6.75878 6.78558 6.91095 6.94515 7.06048 7.32122 7.38127 7.72006 7.77963 8.07821 8.60680 8.71620 9.20927 9.35176 9.44837 10.83265 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.003239 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.820883 B = 8642.269789 C = 8759.728057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.093 3.907 3 C 0.141 3.859 4 N -0.745 5.745 5 C 0.715 3.285 6 O -0.601 6.601 7 N -0.630 5.630 8 C 0.103 3.897 9 C -0.115 4.115 10 C 0.247 3.753 11 O -0.586 6.586 12 C -0.536 4.536 13 H 0.067 0.933 14 C 0.069 3.931 15 N -0.894 5.894 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.122 3.878 21 C -0.143 4.143 22 C -0.155 4.155 23 C 0.049 3.951 24 O -0.368 6.368 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.395 0.605 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.384 0.616 36 H 0.269 0.731 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 -19.790 7.011 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.016 3.984 4 N -0.403 5.403 5 C 0.417 3.583 6 O -0.480 6.480 7 N -0.367 5.367 8 C -0.020 4.020 9 C -0.153 4.153 10 C 0.207 3.793 11 O -0.395 6.395 12 C -0.574 4.574 13 H 0.085 0.915 14 C -0.134 4.134 15 N -0.534 5.534 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.000 4.000 21 C -0.181 4.181 22 C -0.192 4.192 23 C -0.027 4.027 24 O -0.288 6.288 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.231 0.769 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.235 0.765 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.952 -19.711 7.265 21.029 hybrid contribution 0.613 0.862 -0.303 1.100 sum -0.340 -18.849 6.961 20.096 Atomic orbital electron populations 1.22058 0.93444 1.02469 1.02980 1.22375 0.94766 0.91656 0.85860 1.21421 0.98172 0.88988 0.89831 1.45047 1.51744 1.10423 1.33093 1.15518 0.80948 0.80780 0.81076 1.90872 1.40068 1.68637 1.48420 1.47912 1.46852 1.14159 1.27740 1.22258 0.92847 0.96649 0.90267 1.22754 1.01822 0.95440 0.95323 1.19505 0.81882 0.88869 0.89051 1.86082 1.31805 1.39482 1.82141 1.21558 1.35143 0.98746 1.01976 0.91496 1.25082 0.95072 0.97983 0.95213 1.69658 1.46457 1.18790 1.18451 0.86344 0.79567 0.80186 0.80771 1.19606 1.20780 1.20783 1.22849 1.01084 0.76851 0.99194 1.23131 1.02524 0.95115 0.97331 1.23244 1.02264 0.97203 0.96531 1.23408 0.94881 0.89411 0.95044 1.88532 1.66978 1.43695 1.29570 0.91684 0.91915 0.91093 0.91597 0.90985 0.76914 0.92589 0.92125 0.90584 0.90562 0.76511 0.92053 0.91900 0.92002 0.89903 0.89508 0.89863 0.90359 0.92087 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.50 37.16 0.32 -1.09 16 2 C 0.09 0.96 0.93 -89.90 -0.08 0.88 16 3 C 0.14 1.92 4.73 -4.05 -0.02 1.90 16 4 N -0.74 -12.08 5.18 -65.23 -0.34 -12.41 16 5 C 0.71 15.23 8.49 -86.92 -0.74 14.49 16 6 O -0.60 -15.06 16.67 5.29 0.09 -14.97 16 7 N -0.63 -13.62 3.33 -176.11 -0.59 -14.21 16 8 C 0.10 1.88 6.57 -2.42 -0.02 1.87 16 9 C -0.12 -2.35 6.25 -24.47 -0.15 -2.51 16 10 C 0.25 6.11 0.85 -89.94 -0.08 6.03 16 11 O -0.59 -14.97 13.07 -35.23 -0.46 -15.43 16 12 C -0.54 -14.24 8.11 -34.44 -0.28 -14.52 16 13 H 0.07 1.75 7.77 -52.49 -0.41 1.34 16 14 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 15 N -0.89 -24.21 10.96 55.43 0.61 -23.60 16 16 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.12 3.08 5.39 -3.07 -0.02 3.06 16 21 C -0.14 -1.08 6.09 -24.79 -0.15 -1.23 16 22 C -0.15 -1.00 7.16 -24.48 -0.18 -1.17 16 23 C 0.05 0.41 7.78 38.19 0.30 0.71 16 24 O -0.37 -4.28 10.66 -35.23 -0.38 -4.65 16 25 H 0.06 0.66 6.55 -51.93 -0.34 0.32 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.40 5.71 5.44 -40.82 -0.22 5.49 16 31 H 0.06 0.85 7.30 -51.93 -0.38 0.48 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 35 H 0.38 10.09 7.21 45.56 0.33 10.42 16 36 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.06 1.72 7.81 -51.93 -0.41 1.32 16 38 H 0.06 1.69 8.00 -51.92 -0.42 1.28 16 39 H 0.08 0.62 7.85 -51.93 -0.41 0.21 16 40 H 0.09 0.54 7.82 -51.93 -0.41 0.14 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -31.50 350.37 -8.43 -39.93 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -6.43 Total: 14.16 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -1.19 Total: 10.17 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.32 Total: -50.22 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.75 Total: -35.05 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.50 -8.43 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591980041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.657 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds