Wall clock time and date at job start Tue Mar 31 2020 04:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.82726 * 2 1 4 4 N 1.46498 * 109.47191 * 305.70286 * 3 2 1 5 5 C 1.34778 * 120.00411 * 180.02562 * 4 3 2 6 6 O 1.21588 * 119.99371 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00291 * 179.97438 * 5 4 3 8 8 C 1.47426 * 125.64968 * 359.95450 * 7 5 4 9 9 C 1.55118 * 104.94495 * 204.03960 * 8 7 5 10 10 C 1.55154 * 101.48474 * 323.22202 * 9 8 7 11 11 O 1.42896 * 110.72198 * 276.82816 * 10 9 8 12 12 C 1.50702 * 110.71956 * 153.73211 * 10 9 8 13 13 H 1.08002 * 120.00299 * 2.44550 * 12 10 9 14 14 C 1.37884 * 119.99942 * 182.16109 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.47019 * 125.65076 * 179.97438 * 7 5 4 21 21 C 1.54385 * 109.83194 * 120.89040 * 2 1 3 22 22 C 1.55301 * 102.25725 * 98.24278 * 21 2 1 23 23 C 1.54947 * 100.94235 * 34.13532 * 22 21 2 24 24 O 1.43238 * 109.82961 * 239.11183 * 2 1 3 25 25 H 1.08999 * 109.46846 * 59.29845 * 1 2 3 26 26 H 1.09005 * 109.47433 * 179.29752 * 1 2 3 27 27 H 1.09000 * 109.46926 * 299.30165 * 1 2 3 28 28 H 1.09000 * 109.47028 * 185.69977 * 3 2 1 29 29 H 1.08996 * 109.47078 * 65.69892 * 3 2 1 30 30 H 0.96999 * 119.99929 * 359.97438 * 4 3 2 31 31 H 1.09001 * 110.36602 * 323.00573 * 8 7 5 32 32 H 1.09000 * 110.36725 * 85.21080 * 8 7 5 33 33 H 1.09005 * 111.16464 * 205.12953 * 9 8 7 34 34 H 1.08998 * 110.93689 * 81.21185 * 9 8 7 35 35 H 0.96700 * 114.00666 * 177.55588 * 11 10 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.88427 * 59.48270 * 20 7 5 38 38 H 1.09008 * 110.01210 * 298.39333 * 20 7 5 39 39 H 1.08996 * 110.85044 * 216.43962 * 21 2 1 40 40 H 1.08999 * 110.84490 * 340.05138 * 21 2 1 41 41 H 1.09001 * 111.12854 * 152.05376 * 22 21 2 42 42 H 1.08998 * 111.12741 * 276.17780 * 22 21 2 43 43 H 1.08994 * 110.31094 * 82.46678 * 23 22 21 44 44 H 1.08994 * 110.31499 * 204.54618 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 7 1.4563 2.1720 -1.1216 5 6 1.7709 3.4672 -1.3220 6 8 2.5462 4.0275 -0.5715 7 7 1.2261 4.1411 -2.3541 8 6 0.2770 3.5872 -3.3368 9 6 0.4372 4.4801 -4.5950 10 6 0.6655 5.8756 -3.9565 11 8 -0.5809 6.4852 -3.6147 12 6 1.4546 6.7636 -4.8838 13 1 1.7416 6.4045 -5.8611 14 6 1.8053 8.0366 -4.4867 15 7 1.4559 8.4738 -3.2966 16 14 2.7769 9.1399 -5.6391 17 1 3.0430 8.4175 -6.9088 18 1 1.9941 10.3693 -5.9242 19 1 4.0653 9.5105 -5.0005 20 6 1.4802 5.5505 -2.6868 21 6 2.0537 -0.7456 1.2463 22 6 2.3703 -2.1558 0.6780 23 6 2.8436 -1.7968 -0.7531 24 8 2.0159 -0.6917 -1.1563 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3634 -1.0276 -0.0126 27 1 -0.3633 0.5030 0.8962 28 1 3.1341 1.4342 -0.1021 29 1 1.7743 1.9245 0.9366 30 1 0.8380 1.7249 -1.7205 31 1 0.5319 2.5532 -3.5692 32 1 -0.7426 3.6493 -2.9562 33 1 -0.4684 4.4714 -5.2017 34 1 1.3023 4.1732 -5.1828 35 1 -0.4924 7.3435 -3.1781 36 1 1.7030 9.3692 -3.0171 37 1 2.5425 5.7002 -2.8796 38 1 1.1587 6.1914 -1.8657 39 1 2.9562 -0.2710 1.6315 40 1 1.2846 -0.8015 2.0166 41 1 3.1660 -2.6385 1.2454 42 1 1.4762 -2.7787 0.6520 43 1 3.8923 -1.5003 -0.7415 44 1 2.6979 -2.6438 -1.4234 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591980041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:52 Heat of formation + Delta-G solvation = -148.365686 kcal Electronic energy + Delta-G solvation = -25294.444323 eV Core-core repulsion = 21631.661303 eV Total energy + Delta-G solvation = -3662.783021 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47544 -40.63767 -39.09424 -36.08981 -35.97539 -34.19780 -33.41120 -32.36618 -31.44452 -29.61151 -28.05304 -27.06356 -26.00719 -24.18192 -22.69885 -21.48093 -21.17784 -20.88914 -19.29594 -18.92397 -17.53031 -17.37145 -16.92734 -16.83746 -16.69045 -16.18520 -15.90621 -15.31933 -15.10189 -14.77857 -14.68179 -14.48882 -14.15333 -13.74008 -13.64938 -13.49951 -13.42005 -13.28716 -12.97201 -12.87290 -12.62667 -12.53942 -12.32846 -12.25122 -12.09771 -11.98497 -11.84310 -11.61060 -11.33411 -11.19241 -10.65539 -10.54495 -10.29786 -10.25416 -9.41015 -8.26702 -6.42416 1.40104 1.43233 1.54303 1.65590 2.11621 2.37953 2.76888 2.99887 3.10186 3.48550 3.68937 3.79246 3.84621 4.05232 4.07362 4.15037 4.17460 4.36306 4.37334 4.54598 4.57558 4.62970 4.70114 4.71034 4.83994 4.86539 4.93697 4.98912 5.03459 5.07863 5.11828 5.19864 5.23669 5.32526 5.35164 5.46440 5.49072 5.75057 6.01643 6.10896 6.15678 6.64370 7.03190 7.28605 7.36233 7.53926 8.79834 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.003239 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.820883 B = 8642.269789 C = 8759.728057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 C 0.136 3.864 4 N -0.723 5.723 5 C 0.709 3.291 6 O -0.646 6.646 7 N -0.635 5.635 8 C 0.108 3.892 9 C -0.110 4.110 10 C 0.234 3.766 11 O -0.587 6.587 12 C -0.557 4.557 13 H 0.068 0.932 14 C 0.024 3.976 15 N -0.917 5.917 16 Si 0.965 3.035 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.284 1.284 20 C 0.141 3.859 21 C -0.142 4.142 22 C -0.144 4.144 23 C 0.038 3.962 24 O -0.393 6.393 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.407 0.593 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.377 0.623 36 H 0.270 0.730 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 -22.230 6.662 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.057 3.943 3 C 0.011 3.989 4 N -0.381 5.381 5 C 0.410 3.590 6 O -0.529 6.529 7 N -0.372 5.372 8 C -0.014 4.014 9 C -0.147 4.147 10 C 0.193 3.807 11 O -0.395 6.395 12 C -0.595 4.595 13 H 0.086 0.914 14 C -0.177 4.177 15 N -0.556 5.556 16 Si 0.791 3.209 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.210 1.210 20 C 0.017 3.983 21 C -0.180 4.180 22 C -0.181 4.181 23 C -0.037 4.037 24 O -0.313 6.313 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.245 0.755 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.227 0.773 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.659 -22.226 6.899 23.331 hybrid contribution 0.852 1.587 -0.169 1.809 sum -0.807 -20.639 6.730 21.724 Atomic orbital electron populations 1.22065 0.92349 1.03550 1.02846 1.22379 0.95461 0.89398 0.87038 1.21669 0.97312 0.91186 0.88707 1.44927 1.51064 1.08479 1.33583 1.15769 0.80552 0.82087 0.80556 1.90833 1.42077 1.70004 1.49980 1.47864 1.47609 1.13006 1.28692 1.22412 0.92678 0.97994 0.88315 1.22750 1.02901 0.92831 0.96263 1.19700 0.81415 0.90811 0.88735 1.86071 1.32332 1.39098 1.82030 1.21879 1.35734 0.99506 1.02358 0.91422 1.25847 0.95939 0.99362 0.96548 1.69762 1.47106 1.19043 1.19695 0.85390 0.77982 0.78500 0.79060 1.18852 1.20172 1.21037 1.22364 0.98875 0.78676 0.98398 1.23169 1.02935 0.95394 0.96495 1.23232 1.03312 0.96569 0.95036 1.23620 0.94349 0.88969 0.96812 1.88499 1.67478 1.44733 1.30585 0.92731 0.90196 0.90342 0.93239 0.91044 0.75513 0.88697 0.90943 0.88904 0.89987 0.77346 0.92035 0.95362 0.95422 0.90163 0.87681 0.88111 0.89160 0.92573 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.50 71.98 0.61 -1.78 16 2 C 0.10 1.81 0.93 -10.33 -0.01 1.81 16 3 C 0.14 3.63 4.73 86.38 0.41 4.04 16 4 N -0.72 -22.88 5.18 -478.55 -2.48 -25.35 16 5 C 0.71 30.49 8.49 179.06 1.52 32.01 16 6 O -0.65 -33.53 16.67 -3.99 -0.07 -33.59 16 7 N -0.64 -27.58 3.33 -829.34 -2.76 -30.34 16 8 C 0.11 3.73 6.57 86.93 0.57 4.30 16 9 C -0.11 -4.30 6.25 32.06 0.20 -4.10 16 10 C 0.23 11.64 0.85 -10.35 -0.01 11.63 16 11 O -0.59 -30.31 13.07 -148.98 -1.95 -32.26 16 12 C -0.56 -29.84 8.11 25.60 0.21 -29.63 16 13 H 0.07 3.53 7.77 -2.91 -0.02 3.51 16 14 C 0.02 1.27 5.28 84.66 0.45 1.72 16 15 N -0.92 -50.96 10.96 21.45 0.24 -50.72 16 16 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 C 0.14 7.33 5.39 86.73 0.47 7.80 16 21 C -0.14 -1.80 6.09 31.85 0.19 -1.61 16 22 C -0.14 -1.41 7.16 32.05 0.23 -1.18 16 23 C 0.04 0.57 7.78 72.65 0.57 1.13 16 24 O -0.39 -8.40 10.66 -148.98 -1.59 -9.99 16 25 H 0.05 0.97 6.55 -2.39 -0.02 0.96 16 26 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.41 10.98 5.44 -92.71 -0.50 10.48 16 31 H 0.09 2.57 7.30 -2.39 -0.02 2.55 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 34 H 0.08 3.11 8.03 -2.39 -0.02 3.09 16 35 H 0.38 20.40 7.21 -74.06 -0.53 19.86 16 36 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 37 H 0.03 1.62 7.81 -2.39 -0.02 1.60 16 38 H 0.03 1.59 8.00 -2.38 -0.02 1.57 16 39 H 0.08 1.07 7.85 -2.39 -0.02 1.05 16 40 H 0.10 0.97 7.82 -2.39 -0.02 0.95 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.23 350.37 -1.21 -71.44 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -0.03 Total: 39.80 kcal Atomic # 6 Polarization: 20.72 SS G_CDS: 5.40 Total: 26.12 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -5.00 Total: -106.42 kcal Atomic # 8 Polarization: -72.24 SS G_CDS: -3.60 Total: -75.84 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -70.23 -1.21 -71.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591980041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.927 kcal (2) G-P(sol) polarization free energy of solvation -70.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds