Wall clock time and date at job start Tue Mar 31 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99882 * 2 1 4 4 C 1.53004 * 109.47056 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47201 * 64.99850 * 4 3 2 6 6 C 1.37099 * 120.00123 * 264.55021 * 5 4 3 7 7 H 1.07997 * 119.99807 * 145.65328 * 6 5 4 8 8 C 1.38954 * 119.99702 * 325.65249 * 6 5 4 9 9 N 1.31412 * 120.00177 * 338.16054 * 8 6 5 10 10 Si 1.86804 * 119.99400 * 158.16195 * 8 6 5 11 11 H 1.48495 * 109.47165 * 60.00031 * 10 8 6 12 12 H 1.48504 * 109.46671 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46971 * 299.99851 * 10 8 6 14 14 C 1.34776 * 119.99672 * 84.55583 * 5 4 3 15 15 O 1.21298 * 120.00358 * 359.97438 * 14 5 4 16 16 C 1.50700 * 119.99884 * 179.97438 * 14 5 4 17 17 N 1.46503 * 109.47226 * 179.97438 * 16 14 5 18 18 N 1.40172 * 126.34849 * 270.00213 * 17 16 14 19 19 C 1.29398 * 108.13888 * 180.02562 * 18 17 16 20 20 C 1.50701 * 125.58609 * 179.97438 * 19 18 17 21 21 N 1.37361 * 108.82948 * 359.73819 * 19 18 17 22 22 C 1.46496 * 125.83396 * 180.30587 * 21 19 18 23 23 C 1.34812 * 108.33547 * 0.43076 * 21 19 18 24 24 O 1.21815 * 126.30700 * 179.84406 * 23 21 19 25 25 H 1.08996 * 109.47175 * 299.99673 * 1 2 3 26 26 H 1.09001 * 109.46887 * 59.99967 * 1 2 3 27 27 H 1.09005 * 109.46928 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47006 * 60.00335 * 3 2 1 29 29 H 1.08997 * 109.47206 * 299.99596 * 3 2 1 30 30 H 1.09002 * 109.46835 * 304.99511 * 4 3 2 31 31 H 1.08998 * 109.46733 * 185.00427 * 4 3 2 32 32 H 0.97000 * 119.99576 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47428 * 59.99604 * 16 14 5 34 34 H 1.09000 * 109.47081 * 299.99873 * 16 14 5 35 35 H 1.08999 * 109.46719 * 0.02562 * 20 19 18 36 36 H 1.08999 * 109.47204 * 120.02022 * 20 19 18 37 37 H 1.09002 * 109.46938 * 240.02469 * 20 19 18 38 38 H 1.09005 * 109.47444 * 180.17199 * 22 21 19 39 39 H 1.09000 * 109.47078 * 300.16871 * 22 21 19 40 40 H 1.09003 * 109.47620 * 60.17143 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2045 -0.7863 -1.3052 7 1 3.9850 -1.3364 -2.2082 8 6 4.7190 -1.4473 -0.1965 9 7 5.3776 -0.7763 0.7216 10 14 4.4744 -3.2900 -0.0112 11 1 5.0931 -3.9900 -1.1654 12 1 5.1145 -3.7501 1.2473 13 1 3.0216 -3.5946 0.0316 14 6 4.1558 1.3217 -2.3529 15 8 3.9529 2.5167 -2.3066 16 6 4.6092 0.6838 -3.6408 17 7 4.7287 1.7107 -4.6788 18 7 3.7201 2.1213 -5.5613 19 6 4.2061 3.0440 -6.3273 20 6 3.4568 3.7605 -7.4211 21 7 5.5153 3.2673 -5.9767 22 6 6.4161 4.2400 -6.5999 23 6 5.8304 2.4363 -4.9630 24 8 6.9094 2.3585 -4.4030 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5683 0.8410 31 1 3.9784 2.1765 0.0890 32 1 5.7370 -1.2379 1.4953 33 1 3.8799 -0.0640 -3.9523 34 1 5.5770 0.2062 -3.4886 35 1 2.4358 3.3820 -7.4701 36 1 3.4381 4.8294 -7.2088 37 1 3.9544 3.5881 -8.3755 38 1 7.3923 4.1924 -6.1172 39 1 6.5232 4.0091 -7.6597 40 1 6.0032 5.2424 -6.4864 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594375527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:14 Heat of formation + Delta-G solvation = -18.902056 kcal Electronic energy + Delta-G solvation = -25172.070615 eV Core-core repulsion = 21411.361216 eV Total energy + Delta-G solvation = -3760.709400 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.02 seconds Orbital eigenvalues (eV) -42.03356 -38.65129 -36.97828 -36.84962 -35.10572 -34.49478 -31.98603 -31.57376 -30.35849 -28.93809 -27.17846 -26.07063 -25.56513 -24.54766 -22.15406 -21.16959 -20.63102 -19.13408 -17.50571 -16.93020 -16.35468 -16.00891 -15.45192 -15.44468 -15.24066 -15.12113 -14.42113 -14.34566 -14.04152 -13.79749 -13.59784 -13.41341 -13.27327 -12.69769 -12.63008 -12.60578 -11.97016 -11.82219 -11.62283 -11.48045 -11.32118 -11.15282 -10.97524 -10.88797 -10.62778 -10.37290 -10.03873 -9.92561 -9.79409 -9.12288 -8.94224 -8.57505 -7.92860 -7.52157 -6.32780 -3.98607 2.14008 2.24515 3.14493 3.20036 3.28394 3.32639 3.33519 3.85372 4.18193 4.52875 4.60514 4.74415 4.84453 5.02565 5.08424 5.14026 5.31403 5.44996 5.54231 5.64015 5.68697 5.75306 5.92626 5.99137 6.02018 6.07616 6.10241 6.21425 6.32522 6.38317 6.59296 6.73273 6.91645 7.30307 7.47334 7.81202 7.99749 8.04694 8.36649 8.50697 9.11916 9.49317 9.91384 10.69652 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.017359 B = 0.004770 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.610292 B = 5868.611128 C = 6618.583830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.053 3.947 4 C 0.116 3.884 5 N -0.422 5.422 6 C -0.335 4.335 7 H 0.089 0.911 8 C 0.052 3.948 9 N -0.858 5.858 10 Si 0.917 3.083 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.452 3.548 15 O -0.600 6.600 16 C 0.159 3.841 17 N -0.424 5.424 18 N -0.266 5.266 19 C 0.255 3.745 20 C -0.069 4.069 21 N -0.561 5.561 22 C 0.100 3.900 23 C 0.651 3.349 24 O -0.555 6.555 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.270 0.730 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 5.707 -12.197 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.008 4.008 5 N -0.140 5.140 6 C -0.463 4.463 7 H 0.107 0.893 8 C -0.154 4.154 9 N -0.494 5.494 10 Si 0.743 3.257 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.195 1.195 14 C 0.239 3.761 15 O -0.486 6.486 16 C 0.036 3.964 17 N -0.243 5.243 18 N -0.089 5.089 19 C -0.024 4.024 20 C -0.128 4.128 21 N -0.291 5.291 22 C -0.043 4.043 23 C 0.350 3.650 24 O -0.429 6.429 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.782 5.391 -11.244 13.355 hybrid contribution 0.216 -0.280 0.209 0.411 sum -4.566 5.110 -11.035 12.990 Atomic orbital electron populations 1.22641 0.83447 1.01706 0.98820 1.88132 1.17364 1.27723 1.95039 1.23024 0.96525 0.84297 0.98636 1.21483 0.89156 0.99090 0.91083 1.43268 1.56019 1.07279 1.07423 1.19280 1.43080 0.81948 1.01966 0.89349 1.25241 0.93653 1.00066 0.96466 1.69908 1.30445 1.37372 1.11718 0.86176 0.78996 0.82828 0.77692 1.19895 1.21091 1.19532 1.20488 0.82187 0.86797 0.86594 1.90537 1.57271 1.15120 1.85645 1.21196 1.05163 0.86367 0.83719 1.48504 1.07668 1.36748 1.31383 1.76872 1.14245 1.14361 1.03444 1.24007 0.83468 0.96408 0.98483 1.20312 1.00132 0.99514 0.92858 1.45762 1.12174 1.37105 1.34066 1.21711 0.94218 0.90461 0.97887 1.16651 0.85499 0.81230 0.81584 1.91061 1.23288 1.71587 1.56943 0.95204 0.94985 0.90430 0.94312 0.94098 0.86444 0.91360 0.91934 0.87243 0.86208 0.88534 0.89526 0.89582 0.88938 0.90825 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.96 10.44 -35.23 -0.37 -8.33 16 3 C 0.05 1.14 6.24 37.16 0.23 1.38 16 4 C 0.12 2.87 5.29 -4.04 -0.02 2.85 16 5 N -0.42 -10.97 2.51 -114.81 -0.29 -11.26 16 6 C -0.34 -8.63 8.48 -14.93 -0.13 -8.76 16 7 H 0.09 2.14 6.98 -52.49 -0.37 1.78 16 8 C 0.05 1.34 4.93 -17.47 -0.09 1.25 16 9 N -0.86 -23.10 11.34 55.50 0.63 -22.47 16 10 Si 0.92 20.08 29.61 -169.99 -5.03 15.04 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 13 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 14 C 0.45 11.69 7.67 -10.99 -0.08 11.61 16 15 O -0.60 -16.90 16.10 5.54 0.09 -16.81 16 16 C 0.16 3.55 5.53 -5.19 -0.03 3.52 16 17 N -0.42 -9.11 3.11 -66.31 -0.21 -9.31 16 18 N -0.27 -4.95 12.53 32.97 0.41 -4.53 16 19 C 0.25 3.68 7.98 -154.16 -1.23 2.45 16 20 C -0.07 -0.54 10.10 36.01 0.36 -0.17 16 21 N -0.56 -8.87 3.14 -125.41 -0.39 -9.27 16 22 C 0.10 1.02 10.86 59.84 0.65 1.67 16 23 C 0.65 13.90 8.61 -86.74 -0.75 13.15 16 24 O -0.56 -13.62 17.48 5.09 0.09 -13.53 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.12 3.09 5.37 -51.93 -0.28 2.81 16 31 H 0.07 1.73 7.59 -51.93 -0.39 1.34 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.11 2.19 7.65 -51.93 -0.40 1.79 16 34 H 0.12 2.68 8.06 -51.93 -0.42 2.26 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 1.06 7.73 -51.93 -0.40 0.66 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -36.61 347.38 -5.42 -42.02 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.62 Total: 2.63 kcal Atomic # 6 Polarization: 30.54 SS G_CDS: 0.03 Total: 30.57 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.15 Total: -56.84 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.19 Total: -38.67 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.61 -5.42 -42.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594375527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.122 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.03 seconds