Wall clock time and date at job start Tue Mar 31 2020 03:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99882 * 2 1 4 4 C 1.53004 * 109.47056 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47201 * 64.99850 * 4 3 2 6 6 C 1.37099 * 120.00123 * 264.55021 * 5 4 3 7 7 H 1.07997 * 119.99807 * 145.65328 * 6 5 4 8 8 C 1.38954 * 119.99702 * 325.65249 * 6 5 4 9 9 N 1.31412 * 120.00177 * 338.16054 * 8 6 5 10 10 Si 1.86804 * 119.99400 * 158.16195 * 8 6 5 11 11 H 1.48495 * 109.47165 * 60.00031 * 10 8 6 12 12 H 1.48504 * 109.46671 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46971 * 299.99851 * 10 8 6 14 14 C 1.34776 * 119.99672 * 84.55583 * 5 4 3 15 15 O 1.21298 * 120.00358 * 359.97438 * 14 5 4 16 16 C 1.50700 * 119.99884 * 179.97438 * 14 5 4 17 17 N 1.46503 * 109.47226 * 179.97438 * 16 14 5 18 18 N 1.40172 * 126.34849 * 270.00213 * 17 16 14 19 19 C 1.29398 * 108.13888 * 180.02562 * 18 17 16 20 20 C 1.50701 * 125.58609 * 179.97438 * 19 18 17 21 21 N 1.37361 * 108.82948 * 359.73819 * 19 18 17 22 22 C 1.46496 * 125.83396 * 180.30587 * 21 19 18 23 23 C 1.34812 * 108.33547 * 0.43076 * 21 19 18 24 24 O 1.21815 * 126.30700 * 179.84406 * 23 21 19 25 25 H 1.08996 * 109.47175 * 299.99673 * 1 2 3 26 26 H 1.09001 * 109.46887 * 59.99967 * 1 2 3 27 27 H 1.09005 * 109.46928 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47006 * 60.00335 * 3 2 1 29 29 H 1.08997 * 109.47206 * 299.99596 * 3 2 1 30 30 H 1.09002 * 109.46835 * 304.99511 * 4 3 2 31 31 H 1.08998 * 109.46733 * 185.00427 * 4 3 2 32 32 H 0.97000 * 119.99576 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47428 * 59.99604 * 16 14 5 34 34 H 1.09000 * 109.47081 * 299.99873 * 16 14 5 35 35 H 1.08999 * 109.46719 * 0.02562 * 20 19 18 36 36 H 1.08999 * 109.47204 * 120.02022 * 20 19 18 37 37 H 1.09002 * 109.46938 * 240.02469 * 20 19 18 38 38 H 1.09005 * 109.47444 * 180.17199 * 22 21 19 39 39 H 1.09000 * 109.47078 * 300.16871 * 22 21 19 40 40 H 1.09003 * 109.47620 * 60.17143 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2045 -0.7863 -1.3052 7 1 3.9850 -1.3364 -2.2082 8 6 4.7190 -1.4473 -0.1965 9 7 5.3776 -0.7763 0.7216 10 14 4.4744 -3.2900 -0.0112 11 1 5.0931 -3.9900 -1.1654 12 1 5.1145 -3.7501 1.2473 13 1 3.0216 -3.5946 0.0316 14 6 4.1558 1.3217 -2.3529 15 8 3.9529 2.5167 -2.3066 16 6 4.6092 0.6838 -3.6408 17 7 4.7287 1.7107 -4.6788 18 7 3.7201 2.1213 -5.5613 19 6 4.2061 3.0440 -6.3273 20 6 3.4568 3.7605 -7.4211 21 7 5.5153 3.2673 -5.9767 22 6 6.4161 4.2400 -6.5999 23 6 5.8304 2.4363 -4.9630 24 8 6.9094 2.3585 -4.4030 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5683 0.8410 31 1 3.9784 2.1765 0.0890 32 1 5.7370 -1.2379 1.4953 33 1 3.8799 -0.0640 -3.9523 34 1 5.5770 0.2062 -3.4886 35 1 2.4358 3.3820 -7.4701 36 1 3.4381 4.8294 -7.2088 37 1 3.9544 3.5881 -8.3755 38 1 7.3923 4.1924 -6.1172 39 1 6.5232 4.0091 -7.6597 40 1 6.0032 5.2424 -6.4864 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594375527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:13 Heat of formation + Delta-G solvation = -45.224546 kcal Electronic energy + Delta-G solvation = -25173.212044 eV Core-core repulsion = 21411.361216 eV Total energy + Delta-G solvation = -3761.850829 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.42046 -40.59889 -38.62159 -38.47597 -36.79210 -36.17213 -33.57608 -33.26133 -31.81253 -30.43889 -28.27915 -27.44671 -27.21024 -26.34828 -23.86172 -22.64554 -21.94711 -21.09577 -19.26164 -18.50097 -17.92753 -17.57043 -17.23190 -17.02515 -16.80736 -16.63049 -16.21338 -16.06672 -15.68105 -15.34854 -14.83937 -14.73746 -14.49808 -14.06400 -13.66986 -13.60626 -13.53389 -13.32770 -13.17767 -12.91895 -12.83496 -12.79988 -12.79430 -12.53330 -12.44690 -12.10518 -11.83228 -11.40666 -11.30621 -10.98859 -10.57792 -10.40026 -9.56558 -9.49547 -8.30006 -6.02100 0.73644 1.05992 1.44120 1.51970 1.58117 1.60777 1.88769 2.12232 2.35171 2.86943 2.98221 3.15036 3.46165 3.81270 4.06802 4.12580 4.21006 4.27988 4.34132 4.43590 4.49111 4.50589 4.57574 4.59063 4.72577 4.73940 4.79625 4.83195 4.87819 4.91620 5.06807 5.09455 5.30725 5.47367 5.74336 5.90361 6.37433 6.37560 6.66986 6.95947 7.11328 7.49462 7.91591 8.73517 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.017359 B = 0.004770 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.610292 B = 5868.611128 C = 6618.583830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.068 3.932 4 C 0.113 3.887 5 N -0.428 5.428 6 C -0.350 4.350 7 H 0.100 0.900 8 C 0.011 3.989 9 N -0.892 5.892 10 Si 0.984 3.016 11 H -0.262 1.262 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.438 3.562 15 O -0.632 6.632 16 C 0.170 3.830 17 N -0.440 5.440 18 N -0.311 5.311 19 C 0.280 3.720 20 C -0.067 4.067 21 N -0.554 5.554 22 C 0.088 3.912 23 C 0.630 3.370 24 O -0.605 6.605 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.273 0.727 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 5.784 -14.364 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.010 4.010 4 C -0.011 4.011 5 N -0.145 5.145 6 C -0.477 4.477 7 H 0.118 0.882 8 C -0.192 4.192 9 N -0.529 5.529 10 Si 0.807 3.193 11 H -0.186 1.186 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.226 3.774 15 O -0.521 6.521 16 C 0.045 3.955 17 N -0.257 5.257 18 N -0.135 5.135 19 C 0.002 3.998 20 C -0.126 4.126 21 N -0.283 5.283 22 C -0.052 4.052 23 C 0.329 3.671 24 O -0.482 6.482 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.387 5.494 -13.463 15.882 hybrid contribution 0.679 -0.182 0.800 1.065 sum -5.708 5.312 -12.663 14.871 Atomic orbital electron populations 1.22898 0.80537 1.03442 1.00244 1.88060 1.20553 1.27480 1.95299 1.22736 0.94160 0.84746 0.99316 1.21442 0.91675 0.97576 0.90421 1.43507 1.55645 1.07665 1.07702 1.19654 1.43326 0.81950 1.02754 0.88214 1.26103 0.92898 1.04343 0.95845 1.70016 1.31322 1.39217 1.12315 0.85143 0.78814 0.77434 0.77876 1.18608 1.21002 1.19273 1.21106 0.81902 0.86594 0.87755 1.90483 1.58776 1.16427 1.86382 1.20934 1.04753 0.86974 0.82843 1.48488 1.08703 1.36880 1.31669 1.76903 1.14113 1.17504 1.04956 1.25388 0.82647 0.94121 0.97615 1.20748 0.99945 1.00061 0.91824 1.46036 1.13400 1.36388 1.32435 1.22201 0.92647 0.90700 0.99630 1.17059 0.85012 0.82237 0.82824 1.90994 1.25028 1.73226 1.58996 0.92958 0.94294 0.88602 0.91472 0.95342 0.87917 0.93209 0.91784 0.85419 0.87283 0.87686 0.86836 0.85741 0.90765 0.86451 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.39 -17.02 10.44 -148.98 -1.56 -18.57 16 3 C 0.07 2.97 6.24 71.98 0.45 3.42 16 4 C 0.11 5.80 5.29 86.38 0.46 6.26 16 5 N -0.43 -23.02 2.51 -635.54 -1.60 -24.62 16 6 C -0.35 -18.32 8.48 84.04 0.71 -17.61 16 7 H 0.10 4.87 6.98 -2.91 -0.02 4.85 16 8 C 0.01 0.59 4.93 84.93 0.42 1.01 16 9 N -0.89 -49.14 11.34 21.66 0.25 -48.89 16 10 Si 0.98 41.06 29.61 68.60 2.03 43.09 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 13 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 14 C 0.44 23.61 7.67 87.66 0.67 24.28 16 15 O -0.63 -37.19 16.10 -3.08 -0.05 -37.24 16 16 C 0.17 7.87 5.53 85.63 0.47 8.35 16 17 N -0.44 -19.39 3.11 -481.77 -1.50 -20.89 16 18 N -0.31 -11.42 12.53 -49.59 -0.62 -12.05 16 19 C 0.28 7.46 7.98 137.69 1.10 8.56 16 20 C -0.07 -0.74 10.10 71.24 0.72 -0.02 16 21 N -0.55 -16.81 3.14 -668.82 -2.10 -18.91 16 22 C 0.09 1.58 10.86 127.77 1.39 2.96 16 23 C 0.63 27.60 8.61 178.99 1.54 29.14 16 24 O -0.60 -31.17 17.48 -4.72 -0.08 -31.25 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 5.60 5.37 -2.39 -0.01 5.59 16 31 H 0.05 2.67 7.59 -2.39 -0.02 2.65 16 32 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 33 H 0.13 5.26 7.65 -2.39 -0.02 5.25 16 34 H 0.11 5.19 8.06 -2.39 -0.02 5.17 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 1.65 7.73 -2.38 -0.02 1.63 16 39 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -84.95 347.38 5.00 -79.96 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.05 Total: 21.00 kcal Atomic # 6 Polarization: 59.19 SS G_CDS: 9.18 Total: 68.37 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -5.57 Total: -125.35 kcal Atomic # 8 Polarization: -85.37 SS G_CDS: -1.69 Total: -87.06 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -84.95 5.00 -79.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594375527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.731 kcal (2) G-P(sol) polarization free energy of solvation -84.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds