Wall clock time and date at job start Tue Mar 31 2020 03:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47072 * 293.95488 * 3 2 1 5 5 C 1.50696 * 109.47198 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99867 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00488 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99461 * 359.97438 * 7 5 4 9 9 C 1.46496 * 120.00203 * 179.97438 * 7 5 4 10 10 C 1.50697 * 109.47662 * 89.99871 * 9 7 5 11 11 H 1.08007 * 119.99592 * 359.97438 * 10 9 7 12 12 C 1.37872 * 120.00217 * 180.02562 * 10 9 7 13 13 N 1.31511 * 120.00170 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46996 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47072 * 119.99691 * 14 12 10 17 17 H 1.48500 * 109.47141 * 240.00016 * 14 12 10 18 18 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 19 19 C 1.50702 * 109.46796 * 66.04964 * 18 2 1 20 20 N 1.30097 * 126.23409 * 90.02753 * 19 18 2 21 21 N 1.28654 * 109.50608 * 179.97438 * 20 19 18 22 22 C 1.30862 * 109.33747 * 359.97438 * 21 20 19 23 23 O 1.35421 * 126.35218 * 180.02562 * 22 21 20 24 24 O 1.34510 * 107.30251 * 359.77600 * 22 21 20 25 25 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 26 26 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 28 28 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 29 29 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 30 30 H 1.09002 * 109.46936 * 299.99708 * 4 3 2 31 31 H 1.08996 * 109.47340 * 60.00144 * 4 3 2 32 32 H 1.09007 * 109.46834 * 90.00657 * 8 7 5 33 33 H 1.09004 * 109.46612 * 210.00030 * 8 7 5 34 34 H 1.08990 * 109.47578 * 330.00297 * 8 7 5 35 35 H 1.09006 * 109.47077 * 210.00132 * 9 7 5 36 36 H 1.09000 * 109.47466 * 329.99309 * 9 7 5 37 37 H 0.97001 * 120.00228 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.46988 * 186.04548 * 18 2 1 39 39 H 1.08996 * 109.46945 * 306.05035 * 18 2 1 40 40 H 0.96704 * 113.99853 * 89.97583 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 6 2.1718 3.4642 -1.3185 6 8 2.7872 3.8776 -0.3587 7 7 1.9705 4.2633 -2.3850 8 6 1.2267 3.7642 -3.5442 9 6 2.4954 5.6310 -2.3850 10 6 3.8874 5.6349 -2.9623 11 1 4.3364 4.7108 -3.2955 12 6 4.5882 6.8179 -3.0641 13 7 4.0421 7.9429 -2.6570 14 14 6.3140 6.8226 -3.7791 15 1 6.6966 5.4386 -4.1579 16 1 6.3492 7.6931 -4.9816 17 1 7.2683 7.3395 -2.7655 18 6 1.9955 -0.7659 1.1376 19 6 1.6371 -2.2204 0.9728 20 7 2.3497 -3.1240 0.3661 21 7 1.7409 -4.2563 0.4163 22 6 0.6115 -4.1128 1.0616 23 8 -0.2977 -5.0841 1.3142 24 8 0.5237 -2.8228 1.4324 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.5610 1.9274 0.8308 29 1 3.0796 1.3445 0.1082 30 1 2.0657 1.5016 -2.1492 31 1 0.5471 2.0845 -1.4265 32 1 0.1655 3.9770 -3.4141 33 1 1.5879 4.2565 -4.4471 34 1 1.3731 2.6879 -3.6339 35 1 1.8496 6.2681 -2.9894 36 1 2.5249 6.0089 -1.3630 37 1 4.5350 8.7752 -2.7290 38 1 3.0798 -0.6610 1.1755 39 1 1.5611 -0.3872 2.0627 40 1 -0.1511 -5.5530 2.1471 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595548316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:04 Heat of formation + Delta-G solvation = -15.678603 kcal Electronic energy + Delta-G solvation = -23609.208297 eV Core-core repulsion = 19848.638677 eV Total energy + Delta-G solvation = -3760.569620 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.59784 -39.25700 -38.59287 -37.73768 -36.63902 -34.82977 -32.76278 -32.29070 -30.46814 -27.97589 -27.85785 -26.17085 -25.40504 -24.02811 -23.36690 -22.32507 -21.13689 -20.14048 -18.45215 -18.15891 -17.19921 -16.69792 -16.55414 -16.01360 -15.81751 -15.68605 -15.20261 -14.80417 -14.70447 -14.08691 -13.80236 -13.40097 -13.06209 -12.86565 -12.62616 -12.36127 -12.27319 -12.24543 -12.18282 -11.91405 -11.82416 -11.66306 -11.29805 -11.17048 -10.96000 -10.81466 -10.57966 -10.15726 -9.96576 -9.60899 -8.93790 -8.76043 -8.44076 -7.65376 -6.04628 -4.09276 0.55481 1.24374 1.92088 2.99374 3.30309 3.36763 3.39383 3.44962 3.53830 3.87664 4.09714 4.45557 4.54546 4.71815 4.75693 4.84408 4.93099 5.10636 5.16018 5.20130 5.24343 5.29513 5.34912 5.53208 5.65206 5.74402 5.90469 5.95268 6.01483 6.22868 6.36201 6.55680 6.63681 7.04410 7.43102 7.53214 7.85707 7.91904 8.23125 8.40520 8.89854 9.07671 9.56051 11.03491 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.002496 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.314723 B =11215.339059 C =11562.355849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.540 5.540 3 C 0.074 3.926 4 C -0.136 4.136 5 C 0.505 3.495 6 O -0.546 6.546 7 N -0.602 5.602 8 C 0.083 3.917 9 C 0.244 3.756 10 C -0.525 4.525 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.150 3.850 19 C 0.193 3.807 20 N -0.255 5.255 21 N -0.267 5.267 22 C 0.329 3.671 23 O -0.403 6.403 24 O -0.240 6.240 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 -21.315 8.306 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.265 5.265 3 C -0.052 4.052 4 C -0.177 4.177 5 C 0.291 3.709 6 O -0.424 6.424 7 N -0.334 5.334 8 C -0.061 4.061 9 C 0.125 3.875 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.726 3.274 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C 0.021 3.979 19 C -0.019 4.019 20 N -0.104 5.104 21 N -0.128 5.128 22 C 0.080 3.920 23 O -0.209 6.209 24 O -0.122 6.122 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.092 0.908 40 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -9.677 -21.538 7.265 24.704 hybrid contribution -0.469 0.594 1.273 1.481 sum -10.146 -20.944 8.537 24.789 Atomic orbital electron populations 1.22563 0.86869 1.01848 1.02047 1.61921 1.08506 1.15360 1.40715 1.21868 1.01578 0.84644 0.97147 1.21644 1.02180 0.94483 0.99352 1.20227 0.80672 0.86761 0.83209 1.90667 1.41549 1.75630 1.34592 1.48158 1.53687 1.16178 1.15404 1.21652 0.95167 0.99078 0.90241 1.19296 0.93767 0.75649 0.98793 1.21472 1.00041 0.93807 1.41031 0.92371 1.24947 0.98348 0.95382 0.95536 1.69942 1.37798 0.98497 1.47234 0.86437 0.84256 0.78070 0.78637 1.19736 1.20982 1.20879 1.20594 1.03053 0.80045 0.94237 1.27637 0.80208 0.98819 0.95188 1.74522 1.24633 0.94806 1.16394 1.74984 1.02287 1.17527 1.18039 1.24427 0.90351 0.80039 0.97220 1.85029 1.47459 1.42602 1.45819 1.84886 1.42151 1.23170 1.61953 0.90047 0.92085 0.94587 0.93055 0.88982 0.88386 0.89646 0.93825 0.90776 0.92243 0.95049 0.93854 0.92783 0.85147 0.90808 0.72145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.15 60.07 0.55 0.68 16 2 N -0.54 -5.64 4.75 -244.37 -1.16 -6.80 16 3 C 0.07 0.92 4.25 -3.82 -0.02 0.90 16 4 C -0.14 -1.86 4.18 -27.88 -0.12 -1.97 16 5 C 0.51 10.00 7.67 -10.99 -0.08 9.91 16 6 O -0.55 -13.09 15.56 5.56 0.09 -13.01 16 7 N -0.60 -12.51 2.86 -182.95 -0.52 -13.04 16 8 C 0.08 1.28 10.24 59.85 0.61 1.89 16 9 C 0.24 6.35 5.16 -5.20 -0.03 6.32 16 10 C -0.52 -14.84 9.39 -34.44 -0.32 -15.16 16 11 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 14 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C 0.15 1.31 5.59 -4.98 -0.03 1.28 16 19 C 0.19 2.00 7.03 -13.01 -0.09 1.91 16 20 N -0.25 -3.23 12.21 32.58 0.40 -2.83 16 21 N -0.27 -3.27 12.25 29.24 0.36 -2.91 16 22 C 0.33 3.14 9.79 52.35 0.51 3.65 16 23 O -0.40 -2.43 13.63 -41.05 -0.56 -2.99 16 24 O -0.24 -2.34 10.21 -18.97 -0.19 -2.53 16 25 H 0.08 0.71 6.47 -51.93 -0.34 0.38 16 26 H 0.06 0.58 6.63 -51.93 -0.34 0.23 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.09 1.21 7.89 -51.93 -0.41 0.80 16 30 H 0.10 1.28 7.40 -51.93 -0.38 0.89 16 31 H 0.09 0.98 6.52 -51.93 -0.34 0.64 16 32 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.13 1.02 7.93 -51.93 -0.41 0.61 16 39 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 40 H 0.42 -0.09 9.06 45.56 0.41 0.32 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -36.53 344.04 -4.41 -40.93 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -4.60 Total: -4.04 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 0.89 Total: 11.02 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.19 Total: -51.42 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.67 Total: -18.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.53 -4.41 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595548316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.254 kcal (2) G-P(sol) polarization free energy of solvation -36.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds