Wall clock time and date at job start Tue Mar 31 2020 03:19:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45196 * 1
3 3 C 1.34227 * 117.00007 * 2 1
4 4 O 1.20831 * 120.00108 * 0.02562 * 3 2 1
5 5 C 1.50696 * 120.00255 * 180.02562 * 3 2 1
6 6 N 1.46501 * 109.47386 * 180.02562 * 5 3 2
7 7 C 1.37101 * 119.99972 * 269.99921 * 6 5 3
8 8 H 1.07994 * 120.00061 * 203.00016 * 7 6 5
9 9 C 1.38956 * 119.99787 * 22.99592 * 7 6 5
10 10 N 1.31412 * 119.99745 * 351.25873 * 9 7 6
11 11 Si 1.86797 * 119.99920 * 171.26138 * 9 7 6
12 12 H 1.48493 * 109.47392 * 59.99640 * 11 9 7
13 13 H 1.48497 * 109.47117 * 180.02562 * 11 9 7
14 14 H 1.48507 * 109.46914 * 299.99969 * 11 9 7
15 15 C 1.34769 * 120.00332 * 89.99887 * 6 5 3
16 16 O 1.21295 * 119.99896 * 5.01528 * 15 6 5
17 17 C 1.50703 * 120.00134 * 185.01858 * 15 6 5
18 18 N 1.46501 * 109.47240 * 174.92765 * 17 15 6
19 19 C 1.46501 * 120.00321 * 270.00148 * 18 17 15
20 20 C 1.34776 * 119.99820 * 90.00058 * 18 17 15
21 21 O 1.21280 * 120.00014 * 0.02562 * 20 18 17
22 22 C 1.50704 * 120.00315 * 180.02562 * 20 18 17
23 23 C 1.52995 * 117.49949 * 248.62401 * 22 20 18
24 24 C 1.53003 * 117.50222 * 179.97438 * 22 20 18
25 25 H 1.09000 * 109.47393 * 180.02562 * 1 2 3
26 26 H 1.09007 * 109.47039 * 299.99426 * 1 2 3
27 27 H 1.09001 * 109.47602 * 59.99742 * 1 2 3
28 28 H 1.09001 * 109.47420 * 59.99885 * 5 3 2
29 29 H 1.09004 * 109.47236 * 300.00345 * 5 3 2
30 30 H 0.96997 * 119.99377 * 185.01157 * 10 9 7
31 31 H 1.09001 * 109.47065 * 54.93075 * 17 15 6
32 32 H 1.09000 * 109.47031 * 294.92864 * 17 15 6
33 33 H 1.08994 * 109.46945 * 269.99928 * 19 18 17
34 34 H 1.09007 * 109.46863 * 30.00257 * 19 18 17
35 35 H 1.09001 * 109.47036 * 149.99968 * 19 18 17
36 36 H 1.09004 * 115.54803 * 34.33132 * 22 20 18
37 37 H 1.09002 * 117.49811 * 359.97438 * 23 22 20
38 38 H 1.09001 * 117.49590 * 145.01646 * 23 22 20
39 39 H 1.08990 * 117.49805 * 214.98124 * 24 22 20
40 40 H 1.08996 * 117.49374 * 359.97438 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4033 2.2094 0.0005
5 6 3.5662 1.2749 -0.0006
6 7 3.9816 2.6798 0.0002
7 6 4.1755 3.3379 -1.1868
8 1 4.8139 4.2082 -1.2237
9 6 3.5506 2.8851 -2.3424
10 7 2.9156 1.7346 -2.3382
11 14 3.6135 3.9117 -3.9018
12 1 5.0279 4.1046 -4.3107
13 1 2.8755 3.2129 -4.9845
14 1 2.9864 5.2340 -3.6494
15 6 4.1732 3.3253 1.1676
16 8 4.0907 2.7204 2.2157
17 6 4.4897 4.7987 1.1709
18 7 4.5320 5.2861 2.5518
19 6 3.3140 5.7961 3.1862
20 6 5.6914 5.2652 3.2386
21 8 6.6999 4.8433 2.7132
22 6 5.7349 5.7660 4.6593
23 6 6.5068 7.0590 4.9293
24 6 7.0807 5.7155 5.3854
25 1 -0.3634 -1.0276 0.0005
26 1 -0.3633 0.5138 0.8901
27 1 -0.3634 0.5139 -0.8899
28 1 3.9557 0.7810 -0.8908
29 1 3.9564 0.7806 0.8891
30 1 2.5420 1.3839 -3.1618
31 1 3.7192 5.3371 0.6190
32 1 5.4578 4.9634 0.6977
33 1 3.2304 6.8674 3.0034
34 1 2.4457 5.2872 2.7674
35 1 3.3595 5.6132 4.2598
36 1 4.8374 5.5825 5.2501
37 1 6.9836 7.5473 4.0793
38 1 6.1171 7.7267 5.6977
39 1 7.0684 5.4996 6.4536
40 1 7.9346 5.3197 4.8356
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000609991718.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:19:55
Heat of formation + Delta-G solvation = -102.083984 kcal
Electronic energy + Delta-G solvation = -25274.163717 eV
Core-core repulsion = 21477.554527 eV
Total energy + Delta-G solvation = -3796.609190 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.141 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-39.92933 -39.32600 -38.16591 -36.13149 -35.45023 -34.86888 -34.47861 -31.57593
-29.44548 -27.81437 -26.36996 -26.04892 -24.68216 -23.13528 -22.40784 -20.36971
-19.34357 -18.68412 -17.47792 -17.01885 -16.61176 -16.38260 -15.57267 -15.44568
-15.28376 -15.00338 -14.53588 -14.22803 -14.05646 -13.72264 -13.32805 -12.76998
-12.65861 -12.48312 -12.43173 -12.35614 -11.94347 -11.52954 -11.51862 -11.36532
-11.21097 -11.05836 -10.82847 -10.58617 -10.54437 -10.49026 -10.40599 -9.83322
-9.56453 -9.44005 -9.02849 -9.01347 -8.04937 -7.97128 -6.46938 -4.10464
2.79864 3.08070 3.16099 3.17646 3.29556 3.52100 3.72862 3.92830
3.99844 4.08358 4.65056 4.78542 4.82303 4.93081 4.99227 5.14768
5.44396 5.54310 5.63900 5.68993 5.72458 5.76321 5.90107 5.93714
5.98985 6.00533 6.07459 6.15336 6.18512 6.28719 6.52796 6.76547
6.92082 7.28443 7.47542 7.62110 7.75979 8.21934 8.56427 8.94870
9.12109 9.33575 9.73496 10.54287
Molecular weight = 298.14amu
Principal moments of inertia in cm(-1)
A = 0.016511 B = 0.004919 C = 0.004156
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1695.450120 B = 5690.834693 C = 6735.906311
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.044 3.956
2 O -0.373 6.373
3 C 0.492 3.508
4 O -0.517 6.517
5 C 0.154 3.846
6 N -0.432 5.432
7 C -0.329 4.329
8 H 0.102 0.898
9 C 0.044 3.956
10 N -0.884 5.884
11 Si 0.934 3.066
12 H -0.272 1.272
13 H -0.283 1.283
14 H -0.272 1.272
15 C 0.460 3.540
16 O -0.594 6.594
17 C 0.116 3.884
18 N -0.592 5.592
19 C 0.086 3.914
20 C 0.547 3.453
21 O -0.542 6.542
22 C -0.188 4.188
23 C -0.155 4.155
24 C -0.150 4.150
25 H 0.085 0.915
26 H 0.048 0.952
27 H 0.053 0.947
28 H 0.139 0.861
29 H 0.076 0.924
30 H 0.274 0.726
31 H 0.103 0.897
32 H 0.102 0.898
33 H 0.054 0.946
34 H 0.072 0.928
35 H 0.069 0.931
36 H 0.123 0.877
37 H 0.098 0.902
38 H 0.101 0.899
39 H 0.100 0.900
40 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.290 5.691 7.559 9.467
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 O -0.290 6.290
3 C 0.335 3.665
4 O -0.403 6.403
5 C 0.029 3.971
6 N -0.152 5.152
7 C -0.456 4.456
8 H 0.120 0.880
9 C -0.160 4.160
10 N -0.524 5.524
11 Si 0.760 3.240
12 H -0.197 1.197
13 H -0.208 1.208
14 H -0.197 1.197
15 C 0.248 3.752
16 O -0.479 6.479
17 C -0.010 4.010
18 N -0.323 5.323
19 C -0.058 4.058
20 C 0.335 3.665
21 O -0.419 6.419
22 C -0.209 4.209
23 C -0.192 4.192
24 C -0.187 4.187
25 H 0.104 0.896
26 H 0.067 0.933
27 H 0.072 0.928
28 H 0.156 0.844
29 H 0.094 0.906
30 H 0.085 0.915
31 H 0.121 0.879
32 H 0.120 0.880
33 H 0.073 0.927
34 H 0.091 0.909
35 H 0.087 0.913
36 H 0.141 0.859
37 H 0.116 0.884
38 H 0.119 0.881
39 H 0.118 0.882
40 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -0.203 5.385 7.631 9.342
hybrid contribution -0.680 0.380 -1.087 1.337
sum -0.883 5.765 6.544 8.766
Atomic orbital electron populations
1.22915 0.78976 1.01768 1.01428 1.86470 1.21417 1.35530 1.85593
1.23983 0.92338 0.80372 0.69833 1.90482 1.66757 1.36479 1.46574
1.20632 0.86829 0.85648 1.04025 1.43300 1.58277 1.08412 1.05229
1.19629 1.27663 1.13087 0.85245 0.88041 1.25298 0.94166 0.96289
1.00205 1.69599 1.36242 1.17834 1.28707 0.85884 0.78457 0.79707
0.79953 1.19749 1.20833 1.19715 1.20594 0.81668 0.89351 0.83595
1.90533 1.57385 1.68258 1.31697 1.21171 1.04433 0.93566 0.81822
1.47333 1.08996 1.61982 1.13997 1.21753 0.87344 0.98316 0.98355
1.19499 0.82894 0.77640 0.86447 1.90664 1.34205 1.46983 1.70048
1.22225 0.98595 1.04578 0.95534 1.22906 1.02622 0.90204 1.03471
1.22931 0.96008 0.99628 1.00178 0.89630 0.93292 0.92787 0.84405
0.90625 0.91482 0.87897 0.88017 0.92745 0.90873 0.91273 0.85878
0.88386 0.88072 0.88175 0.87481
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.77 10.56 101.05 1.07 1.83 16
2 O -0.37 -8.20 10.56 -39.25 -0.41 -8.61 16
3 C 0.49 12.31 5.92 36.00 0.21 12.53 16
4 O -0.52 -14.12 15.94 -18.75 -0.30 -14.42 16
5 C 0.15 3.82 5.29 -5.20 -0.03 3.80 16
6 N -0.43 -11.03 2.11 -116.09 -0.25 -11.27 16
7 C -0.33 -8.20 9.00 -14.93 -0.13 -8.34 16
8 H 0.10 2.36 6.72 -52.49 -0.35 2.00 16
9 C 0.04 1.08 5.41 -17.46 -0.09 0.99 16
10 N -0.88 -22.51 8.21 55.50 0.46 -22.05 16
11 Si 0.93 19.43 29.57 -169.99 -5.03 14.41 16
12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16
13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16
14 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16
15 C 0.46 11.44 7.69 -10.99 -0.08 11.35 16
16 O -0.59 -16.05 15.97 5.54 0.09 -15.96 16
17 C 0.12 2.39 4.44 -5.19 -0.02 2.37 16
18 N -0.59 -10.82 2.38 -182.95 -0.43 -11.25 16
19 C 0.09 1.20 10.27 59.85 0.61 1.82 16
20 C 0.55 10.17 7.43 -10.98 -0.08 10.09 16
21 O -0.54 -12.07 15.84 5.56 0.09 -11.98 16
22 C -0.19 -2.56 5.29 -91.77 -0.49 -3.05 16
23 C -0.15 -1.65 10.24 -26.71 -0.27 -1.92 16
24 C -0.15 -1.80 10.05 -26.70 -0.27 -2.07 16
25 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
26 H 0.05 0.83 8.13 -51.92 -0.42 0.41 16
27 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16
28 H 0.14 3.44 6.28 -51.93 -0.33 3.11 16
29 H 0.08 1.82 7.36 -51.93 -0.38 1.44 16
30 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16
31 H 0.10 1.98 7.97 -51.93 -0.41 1.56 16
32 H 0.10 2.12 7.02 -51.93 -0.36 1.76 16
33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
34 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16
35 H 0.07 0.83 5.99 -51.93 -0.31 0.52 16
36 H 0.12 1.45 6.44 -51.93 -0.33 1.12 16
37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16
38 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16
39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16
40 H 0.11 1.47 7.67 -51.93 -0.40 1.07 16
LS Contribution 342.27 15.07 5.16 5.16
Total: -1.00 -33.72 342.27 -5.60 -39.32
By element:
Atomic # 1 Polarization: 12.66 SS G_CDS: -5.40 Total: 7.27 kcal
Atomic # 6 Polarization: 28.98 SS G_CDS: 0.42 Total: 29.40 kcal
Atomic # 7 Polarization: -44.35 SS G_CDS: -0.22 Total: -44.58 kcal
Atomic # 8 Polarization: -50.44 SS G_CDS: -0.54 Total: -50.98 kcal
Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -33.72 -5.60 -39.32 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609991718.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.764 kcal
(2) G-P(sol) polarization free energy of solvation -33.717 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.481 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.084 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds