Wall clock time and date at job start Tue Mar 31 2020 03:19:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45196 * 1
3 3 C 1.34227 * 117.00007 * 2 1
4 4 O 1.20831 * 120.00108 * 0.02562 * 3 2 1
5 5 C 1.50696 * 120.00255 * 180.02562 * 3 2 1
6 6 N 1.46501 * 109.47386 * 180.02562 * 5 3 2
7 7 C 1.37101 * 119.99972 * 269.99921 * 6 5 3
8 8 H 1.07994 * 120.00061 * 203.00016 * 7 6 5
9 9 C 1.38956 * 119.99787 * 22.99592 * 7 6 5
10 10 N 1.31412 * 119.99745 * 351.25873 * 9 7 6
11 11 Si 1.86797 * 119.99920 * 171.26138 * 9 7 6
12 12 H 1.48493 * 109.47392 * 59.99640 * 11 9 7
13 13 H 1.48497 * 109.47117 * 180.02562 * 11 9 7
14 14 H 1.48507 * 109.46914 * 299.99969 * 11 9 7
15 15 C 1.34769 * 120.00332 * 89.99887 * 6 5 3
16 16 O 1.21295 * 119.99896 * 5.01528 * 15 6 5
17 17 C 1.50703 * 120.00134 * 185.01858 * 15 6 5
18 18 N 1.46501 * 109.47240 * 174.92765 * 17 15 6
19 19 C 1.46501 * 120.00321 * 270.00148 * 18 17 15
20 20 C 1.34776 * 119.99820 * 90.00058 * 18 17 15
21 21 O 1.21280 * 120.00014 * 0.02562 * 20 18 17
22 22 C 1.50704 * 120.00315 * 180.02562 * 20 18 17
23 23 C 1.52995 * 117.49949 * 248.62401 * 22 20 18
24 24 C 1.53003 * 117.50222 * 179.97438 * 22 20 18
25 25 H 1.09000 * 109.47393 * 180.02562 * 1 2 3
26 26 H 1.09007 * 109.47039 * 299.99426 * 1 2 3
27 27 H 1.09001 * 109.47602 * 59.99742 * 1 2 3
28 28 H 1.09001 * 109.47420 * 59.99885 * 5 3 2
29 29 H 1.09004 * 109.47236 * 300.00345 * 5 3 2
30 30 H 0.96997 * 119.99377 * 185.01157 * 10 9 7
31 31 H 1.09001 * 109.47065 * 54.93075 * 17 15 6
32 32 H 1.09000 * 109.47031 * 294.92864 * 17 15 6
33 33 H 1.08994 * 109.46945 * 269.99928 * 19 18 17
34 34 H 1.09007 * 109.46863 * 30.00257 * 19 18 17
35 35 H 1.09001 * 109.47036 * 149.99968 * 19 18 17
36 36 H 1.09004 * 115.54803 * 34.33132 * 22 20 18
37 37 H 1.09002 * 117.49811 * 359.97438 * 23 22 20
38 38 H 1.09001 * 117.49590 * 145.01646 * 23 22 20
39 39 H 1.08990 * 117.49805 * 214.98124 * 24 22 20
40 40 H 1.08996 * 117.49374 * 359.97438 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4033 2.2094 0.0005
5 6 3.5662 1.2749 -0.0006
6 7 3.9816 2.6798 0.0002
7 6 4.1755 3.3379 -1.1868
8 1 4.8139 4.2082 -1.2237
9 6 3.5506 2.8851 -2.3424
10 7 2.9156 1.7346 -2.3382
11 14 3.6135 3.9117 -3.9018
12 1 5.0279 4.1046 -4.3107
13 1 2.8755 3.2129 -4.9845
14 1 2.9864 5.2340 -3.6494
15 6 4.1732 3.3253 1.1676
16 8 4.0907 2.7204 2.2157
17 6 4.4897 4.7987 1.1709
18 7 4.5320 5.2861 2.5518
19 6 3.3140 5.7961 3.1862
20 6 5.6914 5.2652 3.2386
21 8 6.6999 4.8433 2.7132
22 6 5.7349 5.7660 4.6593
23 6 6.5068 7.0590 4.9293
24 6 7.0807 5.7155 5.3854
25 1 -0.3634 -1.0276 0.0005
26 1 -0.3633 0.5138 0.8901
27 1 -0.3634 0.5139 -0.8899
28 1 3.9557 0.7810 -0.8908
29 1 3.9564 0.7806 0.8891
30 1 2.5420 1.3839 -3.1618
31 1 3.7192 5.3371 0.6190
32 1 5.4578 4.9634 0.6977
33 1 3.2304 6.8674 3.0034
34 1 2.4457 5.2872 2.7674
35 1 3.3595 5.6132 4.2598
36 1 4.8374 5.5825 5.2501
37 1 6.9836 7.5473 4.0793
38 1 6.1171 7.7267 5.6977
39 1 7.0684 5.4996 6.4536
40 1 7.9346 5.3197 4.8356
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000609991718.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:19:54
Heat of formation + Delta-G solvation = -123.316156 kcal
Electronic energy + Delta-G solvation = -25275.084413 eV
Core-core repulsion = 21477.554527 eV
Total energy + Delta-G solvation = -3797.529886 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.141 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-41.54154 -41.04669 -39.95715 -37.51474 -37.02426 -36.56016 -36.26483 -33.51828
-31.19541 -29.40627 -27.85975 -27.49158 -26.50252 -24.46397 -23.27718 -22.17652
-21.22901 -20.06221 -19.10310 -18.55916 -18.38834 -18.22435 -17.29148 -17.11550
-16.95914 -16.44409 -16.07065 -15.89911 -15.59911 -15.31536 -14.78082 -14.47396
-14.19268 -14.16583 -13.86659 -13.59784 -13.33450 -13.18967 -13.00957 -12.90619
-12.78954 -12.67262 -12.42745 -12.38944 -12.15291 -11.59440 -11.51590 -11.48488
-11.38116 -10.96518 -10.88154 -10.81277 -9.93509 -9.62417 -8.36390 -6.06337
1.38599 1.43083 1.48185 1.56144 1.66668 1.80034 1.99562 2.18040
2.32635 2.88342 2.99863 3.10154 3.55967 3.83570 4.01725 4.13111
4.15372 4.27659 4.32861 4.34951 4.37035 4.39073 4.46319 4.56844
4.69948 4.71481 4.75945 4.83619 4.91218 4.95559 5.07982 5.25991
5.29989 5.43038 5.60394 5.70795 6.28974 6.40799 7.01523 7.15120
7.20254 7.41067 7.80306 8.64505
Molecular weight = 298.14amu
Principal moments of inertia in cm(-1)
A = 0.016511 B = 0.004919 C = 0.004156
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1695.450120 B = 5690.834693 C = 6735.906311
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.376 6.376
3 C 0.496 3.504
4 O -0.546 6.546
5 C 0.151 3.849
6 N -0.441 5.441
7 C -0.349 4.349
8 H 0.113 0.887
9 C 0.003 3.997
10 N -0.903 5.903
11 Si 0.999 3.001
12 H -0.261 1.261
13 H -0.284 1.284
14 H -0.269 1.269
15 C 0.446 3.554
16 O -0.625 6.625
17 C 0.124 3.876
18 N -0.597 5.597
19 C 0.081 3.919
20 C 0.534 3.466
21 O -0.593 6.593
22 C -0.204 4.204
23 C -0.125 4.125
24 C -0.155 4.155
25 H 0.133 0.867
26 H 0.051 0.949
27 H 0.046 0.954
28 H 0.134 0.866
29 H 0.073 0.927
30 H 0.274 0.726
31 H 0.116 0.884
32 H 0.094 0.906
33 H 0.089 0.911
34 H 0.054 0.946
35 H 0.092 0.908
36 H 0.147 0.853
37 H 0.089 0.911
38 H 0.141 0.859
39 H 0.130 0.870
40 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.024 7.265 8.237 11.031
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.293 6.293
3 C 0.340 3.660
4 O -0.435 6.435
5 C 0.025 3.975
6 N -0.161 5.161
7 C -0.475 4.475
8 H 0.131 0.869
9 C -0.198 4.198
10 N -0.543 5.543
11 Si 0.823 3.177
12 H -0.185 1.185
13 H -0.210 1.210
14 H -0.194 1.194
15 C 0.235 3.765
16 O -0.512 6.512
17 C -0.002 4.002
18 N -0.327 5.327
19 C -0.060 4.060
20 C 0.325 3.675
21 O -0.474 6.474
22 C -0.225 4.225
23 C -0.162 4.162
24 C -0.192 4.192
25 H 0.151 0.849
26 H 0.070 0.930
27 H 0.064 0.936
28 H 0.151 0.849
29 H 0.091 0.909
30 H 0.084 0.916
31 H 0.134 0.866
32 H 0.112 0.888
33 H 0.108 0.892
34 H 0.073 0.927
35 H 0.110 0.890
36 H 0.164 0.836
37 H 0.107 0.893
38 H 0.159 0.841
39 H 0.148 0.852
40 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -0.960 6.955 8.324 10.890
hybrid contribution -0.503 -0.219 -1.286 1.398
sum -1.463 6.736 7.038 9.852
Atomic orbital electron populations
1.23298 0.76164 1.04862 1.01219 1.86430 1.24115 1.33787 1.84950
1.23867 0.92306 0.80731 0.69119 1.90448 1.67367 1.37547 1.48122
1.20618 0.87390 0.85918 1.03535 1.43544 1.58053 1.08623 1.05849
1.20005 1.28499 1.13683 0.85338 0.86925 1.26164 0.93519 0.97072
1.02997 1.69696 1.36472 1.18892 1.29258 0.84882 0.78884 0.77964
0.75997 1.18515 1.20978 1.19385 1.21344 0.81173 0.90966 0.82992
1.90485 1.58845 1.69315 1.32576 1.20983 1.04206 0.90983 0.84025
1.47562 1.10502 1.61460 1.13174 1.22009 0.84812 0.99954 0.99262
1.20474 0.82098 0.76746 0.88228 1.90627 1.35919 1.49300 1.71562
1.22257 1.00429 1.07359 0.92463 1.23056 1.00125 0.89425 1.03618
1.23034 0.94079 1.00863 1.01263 0.84904 0.92975 0.93553 0.84905
0.90895 0.91580 0.86590 0.88752 0.89243 0.92691 0.88990 0.83585
0.89289 0.84125 0.85215 0.90170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.29 10.56 113.37 1.20 2.48 16
2 O -0.38 -16.49 10.56 -51.39 -0.54 -17.03 16
3 C 0.50 25.24 5.92 71.23 0.42 25.66 16
4 O -0.55 -30.31 15.94 21.95 0.35 -29.96 16
5 C 0.15 7.73 5.29 85.63 0.45 8.18 16
6 N -0.44 -23.14 2.11 -639.60 -1.35 -24.49 16
7 C -0.35 -17.60 9.00 84.04 0.76 -16.84 16
8 H 0.11 5.27 6.72 -2.91 -0.02 5.25 16
9 C 0.00 0.17 5.41 84.93 0.46 0.62 16
10 N -0.90 -46.35 8.21 21.67 0.18 -46.17 16
11 Si 1.00 39.39 29.57 68.60 2.03 41.42 16
12 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16
13 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16
14 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16
15 C 0.45 22.83 7.69 87.66 0.67 23.50 16
16 O -0.62 -34.86 15.97 -3.08 -0.05 -34.91 16
17 C 0.12 5.24 4.44 85.63 0.38 5.62 16
18 N -0.60 -21.66 2.38 -851.11 -2.02 -23.68 16
19 C 0.08 2.15 10.27 127.77 1.31 3.46 16
20 C 0.53 19.86 7.43 87.66 0.65 20.51 16
21 O -0.59 -27.35 15.84 -3.03 -0.05 -27.39 16
22 C -0.20 -5.16 5.29 -11.54 -0.06 -5.22 16
23 C -0.13 -2.28 10.24 30.61 0.31 -1.96 16
24 C -0.16 -3.44 10.05 30.61 0.31 -3.13 16
25 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16
26 H 0.05 1.72 8.13 -2.38 -0.02 1.70 16
27 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16
28 H 0.13 6.86 6.28 -2.39 -0.01 6.84 16
29 H 0.07 3.68 7.36 -2.38 -0.02 3.67 16
30 H 0.27 13.49 8.32 -92.71 -0.77 12.72 16
31 H 0.12 4.49 7.97 -2.39 -0.02 4.47 16
32 H 0.09 4.08 7.02 -2.39 -0.02 4.06 16
33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
34 H 0.05 1.66 8.07 -2.38 -0.02 1.64 16
35 H 0.09 1.99 5.99 -2.39 -0.01 1.97 16
36 H 0.15 2.97 6.44 -2.38 -0.02 2.96 16
37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16
38 H 0.14 1.50 8.14 -2.39 -0.02 1.49 16
39 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16
40 H 0.08 2.23 7.67 -2.39 -0.02 2.21 16
Total: -1.00 -75.70 342.27 6.46 -69.24
By element:
Atomic # 1 Polarization: 29.03 SS G_CDS: 1.06 Total: 30.09 kcal
Atomic # 6 Polarization: 56.02 SS G_CDS: 6.86 Total: 62.88 kcal
Atomic # 7 Polarization: -91.15 SS G_CDS: -3.20 Total: -94.34 kcal
Atomic # 8 Polarization: -109.00 SS G_CDS: -0.29 Total: -109.29 kcal
Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal
Total: -75.70 6.46 -69.24 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609991718.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.079 kcal
(2) G-P(sol) polarization free energy of solvation -75.702 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.781 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds