Wall clock time and date at job start Tue Mar 31 2020 03:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.98197 * 124.71610 * 10 9 7 12 12 C 1.35240 * 107.86272 * 179.89938 * 11 10 9 13 13 C 1.40403 * 107.86459 * 0.36524 * 12 11 10 14 14 N 1.40202 * 125.97095 * 179.74164 * 13 12 11 15 15 C 1.34773 * 119.99643 * 0.02562 * 14 13 12 16 16 O 1.21595 * 120.00464 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99880 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99657 * 359.97438 * 17 15 14 19 19 C 1.52995 * 109.47210 * 90.00166 * 18 17 15 20 20 O 1.42902 * 109.47119 * 64.99890 * 19 18 17 21 21 C 1.46493 * 120.00217 * 179.97438 * 17 15 14 22 22 C 1.53001 * 109.46980 * 89.99831 * 21 17 15 23 23 O 1.42896 * 109.47203 * 64.99916 * 22 21 17 24 24 N 1.31210 * 108.05683 * 359.77201 * 13 12 11 25 25 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 27 27 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 28 28 H 1.08001 * 126.06357 * 0.02562 * 11 10 9 29 29 H 1.07996 * 126.06801 * 180.13733 * 12 11 10 30 30 H 0.96992 * 120.00103 * 180.02562 * 14 13 12 31 31 H 1.09001 * 109.46715 * 210.00068 * 18 17 15 32 32 H 1.09003 * 109.47226 * 329.99811 * 18 17 15 33 33 H 1.09002 * 109.46691 * 184.99991 * 19 18 17 34 34 H 1.09006 * 109.47001 * 304.99526 * 19 18 17 35 35 H 0.96698 * 113.99544 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.47310 * 210.00068 * 21 17 15 37 37 H 1.08998 * 109.47498 * 330.00217 * 21 17 15 38 38 H 1.09004 * 109.47514 * 185.00152 * 22 21 17 39 39 H 1.09004 * 109.47499 * 305.00007 * 22 21 17 40 40 H 0.96700 * 114.00040 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8468 -3.1129 -0.9209 12 6 5.0527 -4.4049 -0.5784 13 6 4.2961 -4.6708 0.5741 14 7 4.2270 -5.8978 1.2488 15 6 4.9295 -6.9556 0.7973 16 8 5.6229 -6.8460 -0.1955 17 7 4.8626 -8.1354 1.4456 18 6 4.0267 -8.2676 2.6415 19 6 2.6181 -8.7033 2.2334 20 8 2.6710 -10.0123 1.6626 21 6 5.6258 -9.2854 0.9546 22 6 7.0092 -9.2960 1.6080 23 8 6.8701 -9.5072 3.0144 24 7 3.6647 -3.5705 0.9089 25 1 -0.4850 0.8400 0.0004 26 1 3.8711 -0.6780 -0.9023 27 1 3.8785 -0.6824 0.8776 28 1 5.2842 -2.6014 -1.7656 29 1 5.6838 -5.1084 -1.1010 30 1 3.6736 -5.9854 2.0406 31 1 4.4598 -9.0147 3.3066 32 1 3.9754 -7.3084 3.1568 33 1 1.9729 -8.7159 3.1120 34 1 2.2192 -8.0027 1.4997 35 1 1.8113 -10.3531 1.3800 36 1 5.0982 -10.2056 1.2057 37 1 5.7356 -9.2133 -0.1275 38 1 7.6083 -10.0985 1.1775 39 1 7.5019 -8.3399 1.4312 40 1 7.7095 -9.5261 3.4941 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611245768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:10 Heat of formation + Delta-G solvation = -57.813016 kcal Electronic energy + Delta-G solvation = -24249.077778 eV Core-core repulsion = 20486.681072 eV Total energy + Delta-G solvation = -3762.396706 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31199 -41.19374 -38.37536 -37.69126 -36.26684 -35.98097 -35.15602 -33.09099 -31.40767 -30.89848 -29.48323 -28.62093 -25.03690 -24.04672 -23.91769 -22.48446 -21.61513 -20.51440 -19.28357 -19.08954 -18.32471 -18.22046 -18.06182 -17.49918 -16.97887 -16.36958 -16.29182 -15.78705 -15.49252 -15.44628 -14.97497 -14.76900 -14.44817 -14.28005 -14.06369 -13.89590 -13.84254 -13.43941 -13.24369 -12.95396 -12.64419 -12.46006 -12.22487 -12.13244 -11.81601 -11.66031 -11.47529 -11.16096 -10.95962 -10.86782 -10.85149 -9.87314 -9.68006 -9.02213 -8.36715 -6.46925 1.03901 1.11525 1.37712 1.40386 1.49598 1.67401 2.01639 2.29674 2.36908 2.79765 2.96047 3.32638 3.43507 3.90070 4.05171 4.12539 4.20740 4.25412 4.29343 4.40529 4.52093 4.58741 4.61014 4.69516 4.79714 4.86995 4.93111 4.94950 4.95090 5.15564 5.25351 5.53076 5.75603 5.91530 6.02562 6.42191 6.55506 6.61390 6.86109 6.90992 7.07433 7.16173 7.35918 8.80338 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.003198 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.853018 B = 8753.893698 C = 9404.183287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.229 1.229 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.062 3.938 12 C -0.293 4.293 13 C 0.283 3.717 14 N -0.639 5.639 15 C 0.710 3.290 16 O -0.598 6.598 17 N -0.601 5.601 18 C 0.106 3.894 19 C 0.056 3.944 20 O -0.581 6.581 21 C 0.136 3.864 22 C 0.065 3.935 23 O -0.583 6.583 24 N -0.349 5.349 25 H 0.272 0.728 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.211 0.789 29 H 0.167 0.833 30 H 0.415 0.585 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.395 0.605 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.227 -18.650 4.975 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.152 1.152 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.126 5.126 11 C -0.086 4.086 12 C -0.324 4.324 13 C 0.027 3.973 14 N -0.292 5.292 15 C 0.411 3.589 16 O -0.476 6.476 17 N -0.337 5.337 18 C -0.017 4.017 19 C -0.023 4.023 20 O -0.389 6.389 21 C 0.013 3.987 22 C -0.014 4.014 23 O -0.391 6.391 24 N -0.180 5.180 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.227 0.773 29 H 0.184 0.816 30 H 0.253 0.747 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.244 0.756 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 12.742 -17.808 5.073 22.477 hybrid contribution -0.271 0.320 -0.086 0.428 sum 12.472 -17.488 4.987 22.051 Atomic orbital electron populations 1.70050 1.08578 1.28786 1.50737 1.25919 0.95770 1.03526 0.93224 0.85614 0.79902 0.77217 0.79617 1.19041 1.15210 1.20395 1.21244 0.90547 0.93727 1.52967 0.95553 1.19896 0.94118 0.74350 0.99659 1.48492 1.34481 1.09948 1.19728 1.23223 0.94392 0.94574 0.96388 1.21718 1.11913 0.97135 1.01655 1.19152 0.97366 0.86396 0.94357 1.41604 1.49866 1.06377 1.31350 1.15810 0.80007 0.80413 0.82682 1.90805 1.45703 1.83263 1.27865 1.46972 1.49009 1.08387 1.29286 1.21869 0.89612 1.03413 0.86757 1.22712 0.97099 0.84548 0.97936 1.86407 1.37316 1.31938 1.83238 1.21552 0.90784 0.87540 0.98797 1.22576 0.96974 0.99882 0.81960 1.86407 1.37156 1.95897 1.19635 1.77297 1.26093 0.96654 1.17971 0.91899 0.89899 0.93752 0.77261 0.81570 0.74672 0.87186 0.88829 0.89979 0.95003 0.75566 0.87944 0.89505 0.90368 0.94950 0.75637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.96 40.71 27.47 68.60 1.88 42.60 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.23 -8.43 6.54 99.48 0.65 -7.78 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.67 9.79 25.60 0.25 -31.42 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 9 C 0.24 11.13 5.33 85.63 0.46 11.59 16 10 N -0.34 -15.63 3.67 -351.85 -1.29 -16.92 16 11 C 0.06 2.34 11.43 83.52 0.96 3.30 16 12 C -0.29 -11.56 9.61 22.11 0.21 -11.34 16 13 C 0.28 11.70 8.11 133.31 1.08 12.78 16 14 N -0.64 -21.16 5.32 -321.22 -1.71 -22.87 16 15 C 0.71 22.29 8.25 179.05 1.48 23.77 16 16 O -0.60 -22.04 13.05 -4.02 -0.05 -22.09 16 17 N -0.60 -14.15 2.40 -839.83 -2.02 -16.16 16 18 C 0.11 1.93 5.40 86.38 0.47 2.40 16 19 C 0.06 0.93 7.39 71.98 0.53 1.46 16 20 O -0.58 -9.59 12.48 -148.98 -1.86 -11.45 16 21 C 0.14 2.77 5.63 86.38 0.49 3.25 16 22 C 0.06 1.09 7.39 71.98 0.53 1.63 16 23 O -0.58 -9.04 12.48 -148.98 -1.86 -10.90 16 24 N -0.35 -16.51 12.42 -54.43 -0.68 -17.19 16 25 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.08 3.35 7.12 -2.39 -0.02 3.33 16 27 H 0.04 1.99 7.57 -2.39 -0.02 1.97 16 28 H 0.21 5.80 8.06 -2.91 -0.02 5.78 16 29 H 0.17 6.43 5.91 -2.91 -0.02 6.41 16 30 H 0.41 11.67 6.55 -92.71 -0.61 11.06 16 31 H 0.11 1.89 7.11 -2.39 -0.02 1.87 16 32 H 0.09 1.55 6.36 -2.39 -0.02 1.53 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.39 3.52 9.12 -74.06 -0.68 2.85 16 36 H 0.10 1.93 7.11 -2.39 -0.02 1.91 16 37 H 0.09 1.94 7.42 -2.39 -0.02 1.93 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.39 2.88 9.12 -74.06 -0.68 2.20 16 Total: -1.00 -81.52 338.19 -1.27 -82.79 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.91 Total: 31.37 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 6.91 Total: 18.68 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -5.39 Total: -131.00 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -3.77 Total: -44.44 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.88 Total: 42.60 kcal Total: -81.52 -1.27 -82.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611245768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.978 kcal (2) G-P(sol) polarization free energy of solvation -81.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds