Wall clock time and date at job start Tue Mar 31 2020 03:55:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86798 * 119.99828 * 2 1
4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1
5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1
6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1
7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1
10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7
12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9
13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10
14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10
15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10
16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11
17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11
18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12
19 19 H 1.08997 * 109.46963 * 325.01070 * 18 17 15
20 20 C 1.52997 * 109.47456 * 205.00318 * 18 17 15
21 21 C 1.50701 * 109.47030 * 65.00501 * 20 18 17
22 22 O 1.20831 * 119.99822 * 359.97438 * 21 20 18
23 23 O 1.34224 * 119.99866 * 179.97438 * 21 20 18
24 24 C 1.53004 * 109.46587 * 85.00148 * 18 17 15
25 25 C 1.52997 * 117.49868 * 8.75309 * 24 18 17
26 26 C 1.53000 * 117.50446 * 300.08975 * 24 18 17
27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3
28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2
29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2
30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7
31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7
32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9
33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9
34 34 H 1.00896 * 110.99864 * 296.04610 * 14 12 11
35 35 H 1.00898 * 110.99789 * 59.99986 * 14 12 11
36 36 H 0.97003 * 120.00109 * 0.02562 * 17 15 12
37 37 H 1.08998 * 109.46819 * 184.99974 * 20 18 17
38 38 H 1.08998 * 109.47177 * 304.99904 * 20 18 17
39 39 H 0.96704 * 116.99935 * 179.97438 * 23 21 20
40 40 H 1.09001 * 115.54632 * 154.41535 * 24 18 17
41 41 H 1.09001 * 117.50217 * 359.97438 * 25 24 18
42 42 H 1.09011 * 117.49742 * 145.01791 * 25 24 18
43 43 H 1.09000 * 117.50026 * 214.97921 * 26 24 18
44 44 H 1.09004 * 117.49544 * 359.97438 * 26 24 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4403 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 6 1.4805 -4.9871 -0.0012
12 6 2.4747 -6.1499 -0.0018
13 1 3.1589 -6.0426 -0.8435
14 7 3.2379 -6.1424 1.2534
15 6 1.7254 -7.4516 -0.1263
16 8 1.5132 -8.1256 0.8593
17 7 1.2911 -7.8663 -1.3328
18 6 0.5632 -9.1319 -1.4540
19 1 0.9633 -9.8510 -0.7393
20 6 0.7248 -9.6794 -2.8735
21 6 2.1711 -10.0267 -3.1162
22 8 2.9886 -9.8535 -2.2435
23 8 2.5509 -10.5283 -4.3018
24 6 -0.9206 -8.8965 -1.1640
25 6 -1.3916 -7.4476 -1.0229
26 6 -1.2924 -8.3445 0.2136
27 1 -0.4851 0.8400 0.0004
28 1 0.6242 -2.5567 -0.8904
29 1 0.6248 -2.5571 0.8896
30 1 2.8721 -3.6042 -0.8905
31 1 2.8721 -3.6043 0.8895
32 1 0.8535 -5.0450 0.8885
33 1 0.8542 -5.0446 -0.8914
34 1 3.7995 -5.3077 1.3301
35 1 2.6256 -6.2406 2.0494
36 1 1.4611 -7.3272 -2.1211
37 1 0.1121 -10.5733 -2.9900
38 1 0.4067 -8.9245 -3.5925
39 1 3.4892 -10.7354 -4.4106
40 1 -1.6079 -9.6065 -1.6240
41 1 -0.6444 -6.6622 -1.1362
42 1 -2.3890 -7.2047 -1.3895
43 1 -2.2244 -8.6912 0.6600
44 1 -0.4799 -8.1495 0.9137
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709458358.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:55:06
Heat of formation + Delta-G solvation = -121.595920 kcal
Electronic energy + Delta-G solvation = -24762.871357 eV
Core-core repulsion = 21101.249160 eV
Total energy + Delta-G solvation = -3661.622196 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.90463 -39.94015 -37.62542 -36.40509 -35.84507 -34.22862 -33.34294 -31.54902
-31.22873 -27.89612 -26.17030 -24.87523 -22.67287 -22.37061 -21.66304 -20.43386
-20.06983 -20.04577 -18.32751 -17.38786 -16.90573 -16.57094 -16.35140 -16.05180
-15.77951 -14.89250 -14.68300 -14.50887 -14.36843 -13.97769 -13.65939 -13.34332
-12.96916 -12.84289 -12.48110 -12.33976 -12.02928 -11.92914 -11.80117 -11.77671
-11.46854 -11.15582 -10.88806 -10.81760 -10.71054 -10.57619 -10.40537 -10.10838
-9.80596 -9.69678 -9.36754 -9.13728 -9.01540 -8.43645 -8.37493 -6.03757
-4.06661 1.90887 2.64393 2.79442 3.06397 3.29177 3.35805 3.39066
3.76825 4.20510 4.42518 4.60466 4.70577 4.80445 4.88487 4.93655
4.97307 5.02572 5.21927 5.26756 5.28501 5.32296 5.35919 5.65003
5.70261 5.81050 5.85860 5.97631 6.08411 6.19408 6.28641 6.33168
6.44147 6.57638 6.73653 7.01806 7.20770 7.52864 7.58379 7.61722
7.65448 7.74886 7.95392 8.35668 8.37577 9.00466 9.57911 11.07406
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.018324 B = 0.003124 C = 0.003022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1527.665775 B = 8959.935612 C = 9264.306595
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.057 3.943
3 Si 0.892 3.108
4 H -0.281 1.281
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.522 4.522
8 H 0.055 0.945
9 C 0.023 3.977
10 C -0.109 4.109
11 C -0.146 4.146
12 C 0.075 3.925
13 H 0.097 0.903
14 N -0.829 5.829
15 C 0.534 3.466
16 O -0.528 6.528
17 N -0.722 5.722
18 C 0.189 3.811
19 H 0.100 0.900
20 C -0.120 4.120
21 C 0.471 3.529
22 O -0.497 6.497
23 O -0.521 6.521
24 C -0.177 4.177
25 C -0.174 4.174
26 C -0.179 4.179
27 H 0.261 0.739
28 H 0.015 0.985
29 H 0.015 0.985
30 H 0.050 0.950
31 H 0.048 0.952
32 H 0.064 0.936
33 H 0.064 0.936
34 H 0.351 0.649
35 H 0.348 0.652
36 H 0.398 0.602
37 H 0.121 0.879
38 H 0.114 0.886
39 H 0.411 0.589
40 H 0.110 0.890
41 H 0.099 0.901
42 H 0.091 0.909
43 H 0.088 0.912
44 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.345 -21.265 -8.113 22.763
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.144 4.144
3 Si 0.719 3.281
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.198 1.198
7 C -0.561 4.561
8 H 0.073 0.927
9 C -0.014 4.014
10 C -0.147 4.147
11 C -0.185 4.185
12 C -0.040 4.040
13 H 0.115 0.885
14 N -0.361 5.361
15 C 0.321 3.679
16 O -0.404 6.404
17 N -0.375 5.375
18 C 0.084 3.916
19 H 0.118 0.882
20 C -0.158 4.158
21 C 0.312 3.688
22 O -0.383 6.383
23 O -0.334 6.334
24 C -0.196 4.196
25 C -0.211 4.211
26 C -0.216 4.216
27 H 0.070 0.930
28 H 0.033 0.967
29 H 0.033 0.967
30 H 0.069 0.931
31 H 0.067 0.933
32 H 0.083 0.917
33 H 0.083 0.917
34 H 0.165 0.835
35 H 0.162 0.838
36 H 0.232 0.768
37 H 0.139 0.861
38 H 0.132 0.868
39 H 0.270 0.730
40 H 0.128 0.872
41 H 0.117 0.883
42 H 0.110 0.890
43 H 0.107 0.893
44 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -0.464 -22.163 -7.352 23.355
hybrid contribution 0.454 1.956 -0.439 2.056
sum -0.010 -20.207 -7.791 21.657
Atomic orbital electron populations
1.69959 1.06066 1.26638 1.50766 1.25026 0.94845 0.99287 0.95279
0.86603 0.79879 0.83474 0.78104 1.20664 1.21213 1.19848 1.21251
0.93017 0.91100 1.50700 0.92706 1.19070 0.93898 0.91262 0.97179
1.21655 0.99139 0.93543 1.00348 1.22420 0.98285 0.95182 1.02656
1.21433 0.95464 0.91395 0.95701 0.88546 1.58664 1.28199 1.46003
1.03216 1.20564 0.77730 0.86956 0.82620 1.90582 1.56125 1.56536
1.37118 1.45908 1.58357 1.23065 1.10157 1.20167 0.89977 0.86963
0.94502 0.88166 1.21678 0.90197 1.04750 0.99135 1.23435 0.92346
0.73720 0.79311 1.90832 1.54178 1.48784 1.44502 1.84519 1.34941
1.76398 1.37508 1.22686 0.95585 0.98439 1.02930 1.23021 1.02437
0.92905 1.02714 1.23336 1.03850 1.03039 0.91328 0.92982 0.96663
0.96703 0.93125 0.93329 0.91706 0.91715 0.83450 0.83799 0.76755
0.86140 0.86790 0.73032 0.87182 0.88262 0.89018 0.89342 0.86326
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16
4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16
8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16
9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16
10 C -0.11 -2.09 4.92 -26.73 -0.13 -2.22 16
11 C -0.15 -2.30 4.84 -26.73 -0.13 -2.43 16
12 C 0.08 1.07 3.21 -68.86 -0.22 0.85 16
13 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16
14 N -0.83 -12.20 8.94 -5.65 -0.05 -12.25 16
15 C 0.53 7.67 5.92 -10.99 -0.06 7.60 16
16 O -0.53 -9.08 13.28 5.56 0.07 -9.01 16
17 N -0.72 -7.96 2.76 -53.81 -0.15 -8.11 16
18 C 0.19 1.82 2.00 -67.93 -0.14 1.68 16
19 H 0.10 1.23 7.39 -51.93 -0.38 0.85 16
20 C -0.12 -0.75 5.34 -27.88 -0.15 -0.90 16
21 C 0.47 4.00 8.19 36.01 0.29 4.30 16
22 O -0.50 -6.30 16.11 -18.75 -0.30 -6.60 16
23 O -0.52 -3.28 13.42 -39.24 -0.53 -3.81 16
24 C -0.18 -1.63 5.70 -90.62 -0.52 -2.14 16
25 C -0.17 -1.87 9.74 -26.69 -0.26 -2.13 16
26 C -0.18 -2.10 9.82 -26.69 -0.26 -2.36 16
27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16
30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16
32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16
33 H 0.06 0.97 7.46 -51.93 -0.39 0.59 16
34 H 0.35 4.86 7.55 -39.29 -0.30 4.56 16
35 H 0.35 5.23 8.58 -39.29 -0.34 4.89 16
36 H 0.40 3.69 8.60 -40.82 -0.35 3.34 16
37 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16
38 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.41 1.18 9.10 45.56 0.41 1.59 16
40 H 0.11 0.76 8.11 -51.93 -0.42 0.34 16
41 H 0.10 1.19 5.99 -51.93 -0.31 0.88 16
42 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16
43 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16
44 H 0.12 1.74 5.01 -51.93 -0.26 1.48 16
LS Contribution 361.86 15.07 5.45 5.45
Total: -1.00 -34.95 361.86 -7.95 -42.89
By element:
Atomic # 1 Polarization: 17.61 SS G_CDS: -6.04 Total: 11.58 kcal
Atomic # 6 Polarization: -8.53 SS G_CDS: -2.12 Total: -10.66 kcal
Atomic # 7 Polarization: -46.83 SS G_CDS: 0.54 Total: -46.29 kcal
Atomic # 8 Polarization: -18.66 SS G_CDS: -0.76 Total: -19.41 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -34.95 -7.95 -42.89 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709458358.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.703 kcal
(2) G-P(sol) polarization free energy of solvation -34.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.649 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.596 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds