Wall clock time and date at job start Tue Mar 31 2020 03:55:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86798 * 119.99828 * 2 1
4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1
5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1
6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1
7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1
10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7
12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9
13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10
14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10
15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10
16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11
17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11
18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12
19 19 H 1.08997 * 109.46963 * 325.01070 * 18 17 15
20 20 C 1.52997 * 109.47456 * 205.00318 * 18 17 15
21 21 C 1.50701 * 109.47030 * 65.00501 * 20 18 17
22 22 O 1.20831 * 119.99822 * 359.97438 * 21 20 18
23 23 O 1.34224 * 119.99866 * 179.97438 * 21 20 18
24 24 C 1.53004 * 109.46587 * 85.00148 * 18 17 15
25 25 C 1.52997 * 117.49868 * 8.75309 * 24 18 17
26 26 C 1.53000 * 117.50446 * 300.08975 * 24 18 17
27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3
28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2
29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2
30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7
31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7
32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9
33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9
34 34 H 1.00896 * 110.99864 * 296.04610 * 14 12 11
35 35 H 1.00898 * 110.99789 * 59.99986 * 14 12 11
36 36 H 0.97003 * 120.00109 * 0.02562 * 17 15 12
37 37 H 1.08998 * 109.46819 * 184.99974 * 20 18 17
38 38 H 1.08998 * 109.47177 * 304.99904 * 20 18 17
39 39 H 0.96704 * 116.99935 * 179.97438 * 23 21 20
40 40 H 1.09001 * 115.54632 * 154.41535 * 24 18 17
41 41 H 1.09001 * 117.50217 * 359.97438 * 25 24 18
42 42 H 1.09011 * 117.49742 * 145.01791 * 25 24 18
43 43 H 1.09000 * 117.50026 * 214.97921 * 26 24 18
44 44 H 1.09004 * 117.49544 * 359.97438 * 26 24 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4403 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 6 1.4805 -4.9871 -0.0012
12 6 2.4747 -6.1499 -0.0018
13 1 3.1589 -6.0426 -0.8435
14 7 3.2379 -6.1424 1.2534
15 6 1.7254 -7.4516 -0.1263
16 8 1.5132 -8.1256 0.8593
17 7 1.2911 -7.8663 -1.3328
18 6 0.5632 -9.1319 -1.4540
19 1 0.9633 -9.8510 -0.7393
20 6 0.7248 -9.6794 -2.8735
21 6 2.1711 -10.0267 -3.1162
22 8 2.9886 -9.8535 -2.2435
23 8 2.5509 -10.5283 -4.3018
24 6 -0.9206 -8.8965 -1.1640
25 6 -1.3916 -7.4476 -1.0229
26 6 -1.2924 -8.3445 0.2136
27 1 -0.4851 0.8400 0.0004
28 1 0.6242 -2.5567 -0.8904
29 1 0.6248 -2.5571 0.8896
30 1 2.8721 -3.6042 -0.8905
31 1 2.8721 -3.6043 0.8895
32 1 0.8535 -5.0450 0.8885
33 1 0.8542 -5.0446 -0.8914
34 1 3.7995 -5.3077 1.3301
35 1 2.6256 -6.2406 2.0494
36 1 1.4611 -7.3272 -2.1211
37 1 0.1121 -10.5733 -2.9900
38 1 0.4067 -8.9245 -3.5925
39 1 3.4892 -10.7354 -4.4106
40 1 -1.6079 -9.6065 -1.6240
41 1 -0.6444 -6.6622 -1.1362
42 1 -2.3890 -7.2047 -1.3895
43 1 -2.2244 -8.6912 0.6600
44 1 -0.4799 -8.1495 0.9137
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000709458358.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:55:05
Heat of formation + Delta-G solvation = -147.580044 kcal
Electronic energy + Delta-G solvation = -24763.998113 eV
Core-core repulsion = 21101.249160 eV
Total energy + Delta-G solvation = -3662.748953 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.72703 -40.81359 -38.58773 -37.22989 -37.03885 -35.26419 -35.11874 -32.99560
-32.32782 -29.43827 -27.37421 -26.11255 -24.26786 -23.26862 -22.32682 -21.94282
-21.21418 -20.93946 -18.96298 -18.51441 -18.45604 -17.64156 -17.34308 -16.94651
-16.61955 -16.51398 -16.12864 -15.84036 -15.51381 -15.17018 -14.64688 -14.35157
-14.25006 -14.01997 -13.65116 -13.52066 -13.47665 -12.96888 -12.92403 -12.78284
-12.60818 -12.45352 -12.43084 -12.33167 -12.22278 -11.60449 -11.50908 -11.43706
-11.29025 -11.20284 -10.92262 -10.66176 -10.56004 -9.98051 -9.66398 -8.20522
-6.31707 1.29018 1.40019 1.40984 1.52003 1.66734 2.12338 2.14194
2.40594 2.94225 3.12841 3.52226 3.67017 3.77172 3.85759 4.00824
4.07025 4.07707 4.21112 4.25919 4.39183 4.44095 4.52967 4.60972
4.69262 4.75271 4.87706 4.90653 5.01317 5.06186 5.16458 5.22514
5.28664 5.39298 5.51385 5.55612 5.70070 5.72764 5.84778 6.05129
6.23880 6.47308 6.55638 6.85885 7.05164 7.30951 7.37979 8.91024
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.018324 B = 0.003124 C = 0.003022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1527.665775 B = 8959.935612 C = 9264.306595
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.001 4.001
3 Si 0.963 3.037
4 H -0.271 1.271
5 H -0.284 1.284
6 H -0.264 1.264
7 C -0.543 4.543
8 H 0.061 0.939
9 C 0.026 3.974
10 C -0.095 4.095
11 C -0.129 4.129
12 C 0.082 3.918
13 H 0.111 0.889
14 N -0.833 5.833
15 C 0.531 3.469
16 O -0.561 6.561
17 N -0.710 5.710
18 C 0.185 3.815
19 H 0.072 0.928
20 C -0.111 4.111
21 C 0.476 3.524
22 O -0.547 6.547
23 O -0.514 6.514
24 C -0.150 4.150
25 C -0.176 4.176
26 C -0.205 4.205
27 H 0.263 0.737
28 H -0.006 1.006
29 H -0.015 1.015
30 H 0.061 0.939
31 H 0.053 0.947
32 H 0.048 0.952
33 H 0.073 0.927
34 H 0.355 0.645
35 H 0.345 0.655
36 H 0.409 0.591
37 H 0.154 0.846
38 H 0.141 0.859
39 H 0.425 0.575
40 H 0.146 0.854
41 H 0.084 0.916
42 H 0.104 0.896
43 H 0.097 0.903
44 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.002 -21.874 -10.197 24.134
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.198 4.198
3 Si 0.788 3.212
4 H -0.196 1.196
5 H -0.210 1.210
6 H -0.188 1.188
7 C -0.581 4.581
8 H 0.079 0.921
9 C -0.011 4.011
10 C -0.133 4.133
11 C -0.169 4.169
12 C -0.033 4.033
13 H 0.129 0.871
14 N -0.365 5.365
15 C 0.317 3.683
16 O -0.440 6.440
17 N -0.362 5.362
18 C 0.081 3.919
19 H 0.090 0.910
20 C -0.149 4.149
21 C 0.319 3.681
22 O -0.437 6.437
23 O -0.328 6.328
24 C -0.169 4.169
25 C -0.213 4.213
26 C -0.242 4.242
27 H 0.072 0.928
28 H 0.012 0.988
29 H 0.003 0.997
30 H 0.080 0.920
31 H 0.071 0.929
32 H 0.067 0.933
33 H 0.091 0.909
34 H 0.170 0.830
35 H 0.158 0.842
36 H 0.245 0.755
37 H 0.172 0.828
38 H 0.159 0.841
39 H 0.287 0.713
40 H 0.163 0.837
41 H 0.102 0.898
42 H 0.122 0.878
43 H 0.115 0.885
44 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -0.107 -22.790 -9.497 24.690
hybrid contribution 0.338 2.097 0.181 2.132
sum 0.231 -20.693 -9.316 22.695
Atomic orbital electron populations
1.70091 1.07796 1.27723 1.51747 1.25970 0.95736 1.03343 0.94794
0.85479 0.78673 0.78559 0.78538 1.19636 1.20980 1.18773 1.21725
0.93607 0.92405 1.50380 0.92055 1.18976 0.94379 0.93099 0.94643
1.21440 0.97993 0.92817 1.01064 1.22200 0.98145 0.94256 1.02324
1.21385 0.95120 0.90819 0.96006 0.87118 1.58680 1.28249 1.46228
1.03328 1.20542 0.77733 0.86781 0.83209 1.90578 1.57465 1.57493
1.38424 1.45829 1.57352 1.23557 1.09426 1.20249 0.89801 0.85598
0.96290 0.91018 1.21719 0.89408 1.06735 0.97005 1.23806 0.92773
0.72502 0.78982 1.90830 1.55667 1.51150 1.46084 1.84488 1.36405
1.75650 1.36214 1.22785 0.95715 0.97949 1.00404 1.23007 1.02785
0.93382 1.02134 1.23263 1.03422 1.05385 0.92091 0.92826 0.98797
0.99694 0.92032 0.92878 0.93324 0.90869 0.82981 0.84159 0.75528
0.82813 0.84141 0.71325 0.83677 0.89797 0.87762 0.88484 0.89552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16
2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16
3 Si 0.96 43.85 29.54 68.60 2.03 45.88 16
4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
6 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16
7 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16
8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16
9 C 0.03 1.34 4.97 29.85 0.15 1.49 16
10 C -0.10 -3.64 4.92 30.60 0.15 -3.49 16
11 C -0.13 -4.12 4.84 30.59 0.15 -3.97 16
12 C 0.08 2.32 3.21 44.17 0.14 2.46 16
13 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16
14 N -0.83 -24.59 8.94 -171.79 -1.54 -26.13 16
15 C 0.53 15.35 5.92 87.66 0.52 15.87 16
16 O -0.56 -20.00 13.28 -3.02 -0.04 -20.04 16
17 N -0.71 -15.07 2.76 -442.54 -1.22 -16.28 16
18 C 0.19 3.28 2.00 44.99 0.09 3.37 16
19 H 0.07 1.76 7.39 -2.39 -0.02 1.74 16
20 C -0.11 -1.03 5.34 29.85 0.16 -0.87 16
21 C 0.48 7.05 8.19 71.24 0.58 7.64 16
22 O -0.55 -13.47 16.11 21.95 0.35 -13.12 16
23 O -0.51 -5.07 13.42 -51.36 -0.69 -5.76 16
24 C -0.15 -2.44 5.70 -10.79 -0.06 -2.50 16
25 C -0.18 -3.59 9.74 30.62 0.30 -3.29 16
26 C -0.20 -4.81 9.82 30.62 0.30 -4.51 16
27 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16
28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16
29 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16
30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
31 H 0.05 1.97 6.87 -2.39 -0.02 1.95 16
32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
33 H 0.07 2.19 7.46 -2.39 -0.02 2.17 16
34 H 0.35 9.71 7.55 -89.70 -0.68 9.03 16
35 H 0.35 10.66 8.58 -89.70 -0.77 9.89 16
36 H 0.41 6.90 8.60 -92.71 -0.80 6.10 16
37 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16
38 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16
39 H 0.43 1.51 9.10 -74.05 -0.67 0.84 16
40 H 0.15 1.40 8.11 -2.39 -0.02 1.38 16
41 H 0.08 1.97 5.99 -2.39 -0.01 1.95 16
42 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16
43 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16
44 H 0.09 2.67 5.01 -2.38 -0.01 2.66 16
Total: -1.00 -78.09 361.86 0.49 -77.61
By element:
Atomic # 1 Polarization: 33.48 SS G_CDS: -1.86 Total: 31.62 kcal
Atomic # 6 Polarization: -20.73 SS G_CDS: 3.17 Total: -17.56 kcal
Atomic # 7 Polarization: -96.15 SS G_CDS: -2.47 Total: -98.62 kcal
Atomic # 8 Polarization: -38.54 SS G_CDS: -0.38 Total: -38.92 kcal
Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal
Total: -78.09 0.49 -77.61 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709458358.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.975 kcal
(2) G-P(sol) polarization free energy of solvation -78.095 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.070 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.605 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds