Wall clock time and date at job start Tue Mar 31 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47118 * 270.00052 * 3 2 1 5 5 H 1.48506 * 109.46930 * 30.00010 * 3 2 1 6 6 H 1.48498 * 109.47306 * 150.00006 * 3 2 1 7 7 C 1.37882 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99889 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99871 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47120 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47090 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47124 * 54.99652 * 12 11 10 14 14 N 1.46902 * 109.46596 * 294.99264 * 12 11 10 15 15 C 1.50696 * 109.47200 * 174.99769 * 12 11 10 16 16 O 1.21277 * 120.00351 * 99.99455 * 15 12 11 17 17 N 1.34778 * 120.00012 * 279.99788 * 15 12 11 18 18 C 1.46504 * 120.00119 * 179.97438 * 17 15 12 19 19 H 1.08995 * 109.46903 * 324.99572 * 18 17 15 20 20 C 1.52998 * 109.47049 * 204.99869 * 18 17 15 21 21 C 1.50706 * 109.47348 * 65.00134 * 20 18 17 22 22 O 1.20830 * 119.99594 * 359.97438 * 21 20 18 23 23 O 1.34222 * 120.00024 * 179.72254 * 21 20 18 24 24 C 1.52994 * 109.46986 * 85.00030 * 18 17 15 25 25 C 1.53011 * 117.50014 * 8.74546 * 24 18 17 26 26 C 1.53002 * 117.49791 * 300.08655 * 24 18 17 27 27 H 0.96997 * 119.99807 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47592 * 59.99860 * 9 7 2 29 29 H 1.09005 * 109.46926 * 299.99249 * 9 7 2 30 30 H 1.09001 * 109.47590 * 59.99499 * 10 9 7 31 31 H 1.09007 * 109.47114 * 299.99442 * 10 9 7 32 32 H 1.08996 * 109.47644 * 59.99675 * 11 10 9 33 33 H 1.09005 * 109.46745 * 299.99143 * 11 10 9 34 34 H 1.00895 * 111.00094 * 300.00084 * 14 12 11 35 35 H 1.00902 * 110.99476 * 63.96102 * 14 12 11 36 36 H 0.97005 * 119.99645 * 0.02562 * 17 15 12 37 37 H 1.09001 * 109.47671 * 305.00343 * 20 18 17 38 38 H 1.08998 * 109.47454 * 185.00340 * 20 18 17 39 39 H 0.96704 * 116.99844 * 179.97438 * 23 21 20 40 40 H 1.09001 * 115.55265 * 154.41129 * 24 18 17 41 41 H 1.09000 * 117.49671 * 0.02562 * 25 24 18 42 42 H 1.08997 * 117.49621 * 145.02119 * 25 24 18 43 43 H 1.09003 * 117.49834 * 214.97943 * 26 24 18 44 44 H 1.09000 * 117.50079 * 359.97438 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0031 13 1 3.1572 -6.0429 0.8458 14 7 3.2392 -6.1424 -1.2511 15 6 1.7248 -7.4516 0.1264 16 8 1.5138 -8.1257 -0.8595 17 7 1.2888 -7.8666 1.3323 18 6 0.5596 -9.1316 1.4520 19 1 -0.0574 -9.2805 0.5660 20 6 -0.3330 -9.0901 2.6940 21 6 -1.3934 -8.0341 2.5155 22 8 -1.4309 -7.3813 1.4994 23 8 -2.2991 -7.8222 3.4832 24 6 1.5567 -10.2849 1.5790 25 6 3.0323 -9.9258 1.7660 26 6 2.5456 -10.4935 0.4303 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5572 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8712 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8878 32 1 0.8544 -5.0451 -0.8894 33 1 0.8526 -5.0447 0.8906 34 1 2.6280 -6.2406 -2.0479 35 1 3.8010 -5.3078 -1.3268 36 1 1.4572 -7.3272 2.1208 37 1 0.2723 -8.8528 3.5688 38 1 -0.8075 -10.0615 2.8331 39 1 -2.9594 -7.1340 3.3234 40 1 1.1861 -11.1727 2.0915 41 1 3.2925 -8.8679 1.7990 42 1 3.6323 -10.5776 2.4011 43 1 2.8257 -11.5185 0.1872 44 1 2.4855 -9.8094 -0.4161 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709458365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:17 Heat of formation + Delta-G solvation = -121.347747 kcal Electronic energy + Delta-G solvation = -24786.070865 eV Core-core repulsion = 21124.459430 eV Total energy + Delta-G solvation = -3661.611435 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84481 -39.87473 -37.67891 -36.29953 -35.79978 -34.24334 -33.32632 -31.52629 -31.20662 -27.85452 -26.17277 -24.86877 -22.59672 -22.47170 -21.60203 -20.40803 -20.12677 -20.01188 -18.22315 -17.35565 -16.87275 -16.58020 -16.31301 -16.04250 -15.71821 -14.90316 -14.69197 -14.52516 -14.36645 -13.87509 -13.59305 -13.32935 -12.98753 -12.83913 -12.44369 -12.32813 -12.06114 -11.93532 -11.78744 -11.66996 -11.48479 -11.16761 -10.79799 -10.78744 -10.69647 -10.55652 -10.47727 -10.15827 -9.76606 -9.68466 -9.35345 -9.12101 -9.03617 -8.43772 -8.36261 -6.01707 -4.04758 2.01880 2.72730 2.79979 3.05598 3.30279 3.36544 3.39575 3.70599 4.20389 4.43774 4.58858 4.72115 4.80142 4.87697 4.90887 4.93572 5.00927 5.21927 5.26268 5.29448 5.33995 5.38997 5.59835 5.66930 5.78412 5.82313 6.00421 6.03599 6.29280 6.31413 6.33395 6.43230 6.61609 6.78991 7.05112 7.19500 7.52674 7.63933 7.64948 7.69433 7.78068 7.97805 8.35272 8.39521 9.02539 9.59545 11.09491 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.003445 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.170521 B = 8124.607983 C = 9362.642128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.144 4.144 12 C 0.075 3.925 13 H 0.096 0.904 14 N -0.829 5.829 15 C 0.534 3.466 16 O -0.529 6.529 17 N -0.722 5.722 18 C 0.188 3.812 19 H 0.101 0.899 20 C -0.119 4.119 21 C 0.468 3.532 22 O -0.493 6.493 23 O -0.522 6.522 24 C -0.175 4.175 25 C -0.174 4.174 26 C -0.179 4.179 27 H 0.260 0.740 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.349 0.651 35 H 0.351 0.649 36 H 0.398 0.602 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.413 0.587 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -21.867 8.257 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.183 4.183 12 C -0.040 4.040 13 H 0.114 0.886 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.404 6.404 17 N -0.375 5.375 18 C 0.083 3.917 19 H 0.119 0.881 20 C -0.157 4.157 21 C 0.309 3.691 22 O -0.379 6.379 23 O -0.335 6.335 24 C -0.194 4.194 25 C -0.211 4.211 26 C -0.215 4.215 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.233 0.767 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.272 0.728 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.033 -23.019 7.581 24.257 hybrid contribution -0.629 2.546 0.247 2.634 sum 0.404 -20.473 7.827 21.922 Atomic orbital electron populations 1.69972 1.06084 1.26599 1.50771 1.25039 0.94845 0.99298 0.95315 0.86596 0.79825 0.83461 0.78131 1.20644 1.21230 1.19862 1.21254 0.92990 0.91092 1.50674 0.92695 1.19071 0.93927 0.91269 0.97210 1.21651 0.99083 0.93648 1.00208 1.22363 0.98164 0.94870 1.02949 1.21425 0.95393 0.91570 0.95594 0.88599 1.58708 1.28164 1.45955 1.03325 1.20576 0.78032 0.86745 0.82520 1.90582 1.56445 1.56424 1.36958 1.45909 1.58537 1.22877 1.10138 1.20163 0.91263 0.82901 0.97359 0.88149 1.21657 0.94600 0.98330 1.01095 1.23374 0.81428 0.83571 0.80725 1.90855 1.71632 1.46664 1.28720 1.84484 1.42610 1.58768 1.47630 1.22686 0.91562 0.99664 1.05535 1.22941 0.95308 1.02139 1.00685 1.23367 1.01808 1.02681 0.93668 0.93000 0.96713 0.96698 0.93180 0.93397 0.91796 0.91641 0.83738 0.83460 0.76745 0.86941 0.86226 0.72757 0.87186 0.88557 0.89257 0.89441 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.14 4.92 -26.73 -0.13 -2.27 16 11 C -0.14 -2.44 4.84 -26.73 -0.13 -2.57 16 12 C 0.08 1.07 3.21 -68.86 -0.22 0.85 16 13 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 14 N -0.83 -11.86 8.94 -5.65 -0.05 -11.91 16 15 C 0.53 7.63 5.92 -10.99 -0.06 7.57 16 16 O -0.53 -9.05 13.28 5.56 0.07 -8.98 16 17 N -0.72 -7.93 2.76 -53.81 -0.15 -8.08 16 18 C 0.19 1.81 2.00 -67.93 -0.14 1.67 16 19 H 0.10 1.26 7.39 -51.93 -0.38 0.87 16 20 C -0.12 -0.79 5.34 -27.88 -0.15 -0.94 16 21 C 0.47 4.57 8.19 36.01 0.29 4.86 16 22 O -0.49 -7.06 16.11 -18.75 -0.30 -7.37 16 23 O -0.52 -4.09 13.42 -39.24 -0.53 -4.62 16 24 C -0.18 -1.48 5.71 -90.62 -0.52 -2.00 16 25 C -0.17 -1.57 9.74 -26.68 -0.26 -1.83 16 26 C -0.18 -1.91 9.82 -26.69 -0.26 -2.17 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.91 6.87 -51.92 -0.36 0.55 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.35 5.25 8.58 -39.29 -0.34 4.91 16 35 H 0.35 4.75 7.55 -39.29 -0.30 4.45 16 36 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 37 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.41 2.06 9.10 45.56 0.41 2.47 16 40 H 0.11 0.69 8.11 -51.93 -0.42 0.27 16 41 H 0.10 0.95 6.67 -51.93 -0.35 0.61 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.12 1.71 5.01 -51.93 -0.26 1.45 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -35.33 363.23 -8.00 -43.33 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.11 Total: 11.85 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.12 Total: -9.95 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.54 Total: -46.39 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.76 Total: -20.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.33 -8.00 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709458365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.019 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds