Wall clock time and date at job start Tue Mar 31 2020 03:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47118 * 270.00052 * 3 2 1 5 5 H 1.48506 * 109.46930 * 30.00010 * 3 2 1 6 6 H 1.48498 * 109.47306 * 150.00006 * 3 2 1 7 7 C 1.37882 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99889 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99871 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47120 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47090 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47124 * 54.99652 * 12 11 10 14 14 N 1.46902 * 109.46596 * 294.99264 * 12 11 10 15 15 C 1.50696 * 109.47200 * 174.99769 * 12 11 10 16 16 O 1.21277 * 120.00351 * 99.99455 * 15 12 11 17 17 N 1.34778 * 120.00012 * 279.99788 * 15 12 11 18 18 C 1.46504 * 120.00119 * 179.97438 * 17 15 12 19 19 H 1.08995 * 109.46903 * 324.99572 * 18 17 15 20 20 C 1.52998 * 109.47049 * 204.99869 * 18 17 15 21 21 C 1.50706 * 109.47348 * 65.00134 * 20 18 17 22 22 O 1.20830 * 119.99594 * 359.97438 * 21 20 18 23 23 O 1.34222 * 120.00024 * 179.72254 * 21 20 18 24 24 C 1.52994 * 109.46986 * 85.00030 * 18 17 15 25 25 C 1.53011 * 117.50014 * 8.74546 * 24 18 17 26 26 C 1.53002 * 117.49791 * 300.08655 * 24 18 17 27 27 H 0.96997 * 119.99807 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47592 * 59.99860 * 9 7 2 29 29 H 1.09005 * 109.46926 * 299.99249 * 9 7 2 30 30 H 1.09001 * 109.47590 * 59.99499 * 10 9 7 31 31 H 1.09007 * 109.47114 * 299.99442 * 10 9 7 32 32 H 1.08996 * 109.47644 * 59.99675 * 11 10 9 33 33 H 1.09005 * 109.46745 * 299.99143 * 11 10 9 34 34 H 1.00895 * 111.00094 * 300.00084 * 14 12 11 35 35 H 1.00902 * 110.99476 * 63.96102 * 14 12 11 36 36 H 0.97005 * 119.99645 * 0.02562 * 17 15 12 37 37 H 1.09001 * 109.47671 * 305.00343 * 20 18 17 38 38 H 1.08998 * 109.47454 * 185.00340 * 20 18 17 39 39 H 0.96704 * 116.99844 * 179.97438 * 23 21 20 40 40 H 1.09001 * 115.55265 * 154.41129 * 24 18 17 41 41 H 1.09000 * 117.49671 * 0.02562 * 25 24 18 42 42 H 1.08997 * 117.49621 * 145.02119 * 25 24 18 43 43 H 1.09003 * 117.49834 * 214.97943 * 26 24 18 44 44 H 1.09000 * 117.50079 * 359.97438 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0031 13 1 3.1572 -6.0429 0.8458 14 7 3.2392 -6.1424 -1.2511 15 6 1.7248 -7.4516 0.1264 16 8 1.5138 -8.1257 -0.8595 17 7 1.2888 -7.8666 1.3323 18 6 0.5596 -9.1316 1.4520 19 1 -0.0574 -9.2805 0.5660 20 6 -0.3330 -9.0901 2.6940 21 6 -1.3934 -8.0341 2.5155 22 8 -1.4309 -7.3813 1.4994 23 8 -2.2991 -7.8222 3.4832 24 6 1.5567 -10.2849 1.5790 25 6 3.0323 -9.9258 1.7660 26 6 2.5456 -10.4935 0.4303 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5572 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8712 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8878 32 1 0.8544 -5.0451 -0.8894 33 1 0.8526 -5.0447 0.8906 34 1 2.6280 -6.2406 -2.0479 35 1 3.8010 -5.3078 -1.3268 36 1 1.4572 -7.3272 2.1208 37 1 0.2723 -8.8528 3.5688 38 1 -0.8075 -10.0615 2.8331 39 1 -2.9594 -7.1340 3.3234 40 1 1.1861 -11.1727 2.0915 41 1 3.2925 -8.8679 1.7990 42 1 3.6323 -10.5776 2.4011 43 1 2.8257 -11.5185 0.1872 44 1 2.4855 -9.8094 -0.4161 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709458365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:16 Heat of formation + Delta-G solvation = -147.934087 kcal Electronic energy + Delta-G solvation = -24787.223735 eV Core-core repulsion = 21124.459430 eV Total energy + Delta-G solvation = -3662.764305 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.72140 -40.81012 -38.61753 -37.21585 -37.05373 -35.27986 -35.10517 -33.01576 -32.32190 -29.44409 -27.38595 -26.13657 -24.25066 -23.22806 -22.32153 -21.94082 -21.25352 -20.93885 -18.98107 -18.52512 -18.44754 -17.63935 -17.39044 -16.90106 -16.63708 -16.51709 -16.14885 -15.88473 -15.56200 -14.90615 -14.82933 -14.34276 -14.23332 -14.02751 -13.65761 -13.56585 -13.49696 -12.97613 -12.91296 -12.77009 -12.58969 -12.47675 -12.41498 -12.37897 -12.21669 -11.62433 -11.54318 -11.44882 -11.29702 -11.18323 -10.88839 -10.65758 -10.58609 -9.99435 -9.67255 -8.22057 -6.34232 1.27816 1.39067 1.40580 1.51722 1.66100 2.12201 2.13864 2.39466 2.97530 3.11076 3.51995 3.66401 3.77219 3.88720 3.97821 4.07389 4.10633 4.22754 4.27524 4.37615 4.46016 4.52265 4.60533 4.67810 4.72332 4.90132 4.91124 4.97515 5.09025 5.15974 5.20416 5.29844 5.45590 5.48797 5.56041 5.68489 5.68982 5.81879 6.03161 6.20637 6.46642 6.55616 6.83586 7.01799 7.30946 7.35780 8.89876 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.003445 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.170521 B = 8124.607983 C = 9362.642128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.093 4.093 11 C -0.129 4.129 12 C 0.084 3.916 13 H 0.121 0.879 14 N -0.828 5.828 15 C 0.530 3.470 16 O -0.562 6.562 17 N -0.709 5.709 18 C 0.184 3.816 19 H 0.066 0.934 20 C -0.109 4.109 21 C 0.470 3.530 22 O -0.550 6.550 23 O -0.515 6.515 24 C -0.156 4.156 25 C -0.164 4.164 26 C -0.206 4.206 27 H 0.263 0.737 28 H -0.019 1.019 29 H -0.012 1.012 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.061 0.939 34 H 0.343 0.657 35 H 0.355 0.645 36 H 0.409 0.591 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.424 0.576 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 -22.776 10.541 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.169 4.169 12 C -0.032 4.032 13 H 0.138 0.862 14 N -0.360 5.360 15 C 0.317 3.683 16 O -0.440 6.440 17 N -0.361 5.361 18 C 0.080 3.920 19 H 0.084 0.916 20 C -0.146 4.146 21 C 0.314 3.686 22 O -0.440 6.440 23 O -0.329 6.329 24 C -0.175 4.175 25 C -0.201 4.201 26 C -0.243 4.243 27 H 0.072 0.928 28 H -0.001 1.001 29 H 0.007 0.993 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.245 0.755 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.285 0.715 40 H 0.162 0.838 41 H 0.105 0.895 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.593 -23.943 9.923 26.047 hybrid contribution -1.202 2.808 -0.451 3.087 sum 1.391 -21.135 9.472 23.202 Atomic orbital electron populations 1.70120 1.08006 1.27770 1.51765 1.26048 0.95748 1.03619 0.94707 0.85412 0.78763 0.78204 0.78464 1.19934 1.20854 1.18274 1.21720 0.93703 0.92162 1.50401 0.91656 1.18994 0.94461 0.93562 0.94290 1.21431 0.97854 0.92424 1.01345 1.22157 0.98202 0.94951 1.01596 1.21383 0.94923 0.90426 0.96431 0.86162 1.58727 1.27938 1.46113 1.03177 1.20558 0.78082 0.86568 0.83115 1.90580 1.57780 1.57372 1.38292 1.45829 1.57419 1.23470 1.09423 1.20242 0.91574 0.82589 0.97641 0.91609 1.21745 0.93591 0.98977 1.00298 1.24011 0.81583 0.83157 0.79833 1.90854 1.73199 1.49000 1.30948 1.84465 1.42572 1.59075 1.46775 1.22740 0.90923 0.99983 1.03842 1.22974 0.95850 1.01892 0.99365 1.23270 1.04814 1.02572 0.93595 0.92834 1.00102 0.99333 0.91604 0.92485 0.94248 0.92015 0.84357 0.82926 0.75516 0.83820 0.82777 0.71484 0.83813 0.89543 0.87147 0.88447 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.54 -30.88 9.11 25.60 0.23 -30.64 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.29 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.67 4.92 30.59 0.15 -3.52 16 11 C -0.13 -4.48 4.84 30.60 0.15 -4.33 16 12 C 0.08 2.35 3.21 44.17 0.14 2.49 16 13 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 14 N -0.83 -23.61 8.94 -171.80 -1.54 -25.15 16 15 C 0.53 15.35 5.92 87.66 0.52 15.87 16 16 O -0.56 -20.11 13.28 -3.02 -0.04 -20.15 16 17 N -0.71 -15.09 2.76 -442.55 -1.22 -16.31 16 18 C 0.18 3.30 2.00 44.99 0.09 3.39 16 19 H 0.07 1.69 7.39 -2.39 -0.02 1.67 16 20 C -0.11 -1.12 5.34 29.85 0.16 -0.96 16 21 C 0.47 8.61 8.19 71.24 0.58 9.20 16 22 O -0.55 -16.15 16.11 21.95 0.35 -15.80 16 23 O -0.52 -7.19 13.42 -51.34 -0.69 -7.87 16 24 C -0.16 -2.25 5.71 -10.79 -0.06 -2.31 16 25 C -0.16 -2.56 9.74 30.62 0.30 -2.26 16 26 C -0.21 -4.25 9.82 30.62 0.30 -3.95 16 27 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 28 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 29 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 2.15 6.87 -2.38 -0.02 2.13 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.34 10.63 8.58 -89.70 -0.77 9.86 16 35 H 0.36 9.35 7.55 -89.69 -0.68 8.67 16 36 H 0.41 6.89 8.60 -92.70 -0.80 6.09 16 37 H 0.14 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.42 3.86 9.10 -74.05 -0.67 3.18 16 40 H 0.14 1.15 8.11 -2.39 -0.02 1.13 16 41 H 0.09 1.53 6.67 -2.39 -0.02 1.51 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 44 H 0.09 2.49 5.01 -2.39 -0.01 2.48 16 Total: -1.00 -80.45 363.23 0.49 -79.96 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -1.87 Total: 32.07 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 3.17 Total: -15.36 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -2.47 Total: -99.20 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.38 Total: -43.82 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -80.45 0.49 -79.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709458365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.972 kcal (2) G-P(sol) polarization free energy of solvation -80.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds