Wall clock time and date at job start Tue Mar 31 2020 04:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99828 * 2 1 4 4 H 1.48491 * 109.47204 * 270.00302 * 3 2 1 5 5 H 1.48503 * 109.46896 * 30.00353 * 3 2 1 6 6 H 1.48507 * 109.46827 * 150.00091 * 3 2 1 7 7 C 1.38954 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00145 * 201.12925 * 7 2 1 9 9 N 1.37095 * 119.99390 * 21.12595 * 7 2 1 10 10 C 1.46504 * 120.00221 * 16.26942 * 9 7 2 11 11 C 1.50706 * 109.46590 * 264.13918 * 10 9 7 12 12 O 1.20825 * 119.99916 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99678 * 179.97438 * 11 10 9 14 14 C 1.34780 * 119.99968 * 196.26192 * 9 7 2 15 15 O 1.21300 * 119.99920 * 359.97438 * 14 9 7 16 16 C 1.50702 * 120.00265 * 180.02562 * 14 9 7 17 17 C 1.52993 * 109.47096 * 179.97438 * 16 14 9 18 18 C 1.53002 * 109.47154 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.47101 * 180.02562 * 18 17 16 20 20 N 1.46899 * 109.46613 * 180.02562 * 19 18 17 21 21 C 1.48530 * 111.00240 * 52.60543 * 20 19 18 22 22 C 1.54942 * 103.22887 * 159.71766 * 21 20 19 23 23 C 1.54597 * 102.92001 * 322.58572 * 22 21 20 24 24 C 1.47901 * 110.99812 * 170.00207 * 20 19 18 25 25 H 0.96996 * 120.00356 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47460 * 24.13615 * 10 9 7 27 27 H 1.09005 * 109.47214 * 144.14409 * 10 9 7 28 28 H 0.96702 * 116.99982 * 179.97438 * 13 11 10 29 29 H 1.08998 * 109.47002 * 60.00117 * 16 14 9 30 30 H 1.08994 * 109.46977 * 300.00158 * 16 14 9 31 31 H 1.08994 * 109.47569 * 300.00080 * 17 16 14 32 32 H 1.09007 * 109.46988 * 60.00095 * 17 16 14 33 33 H 1.09004 * 109.47068 * 300.00501 * 18 17 16 34 34 H 1.08998 * 109.46806 * 60.00486 * 18 17 16 35 35 H 1.08992 * 109.46724 * 299.99970 * 19 18 17 36 36 H 1.08998 * 109.47049 * 60.00444 * 19 18 17 37 37 H 1.09000 * 110.67184 * 278.15405 * 21 20 19 38 38 H 1.09005 * 110.66619 * 41.28652 * 21 20 19 39 39 H 1.08995 * 110.72675 * 204.23074 * 22 21 20 40 40 H 1.08994 * 110.72409 * 80.94253 * 22 21 20 41 41 H 1.08997 * 110.31276 * 263.04277 * 23 22 21 42 42 H 1.08996 * 110.30795 * 140.87062 * 23 22 21 43 43 H 1.09000 * 109.91477 * 333.50809 * 24 20 19 44 44 H 1.08996 * 109.91705 * 94.60304 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2033 -0.0005 8 1 3.0345 -1.2348 0.3366 9 7 1.3926 -2.3505 -0.4290 10 6 0.1549 -2.2697 -1.2086 11 6 -1.0289 -2.4273 -0.2893 12 8 -0.8563 -2.5899 0.8954 13 8 -2.2749 -2.3860 -0.7867 14 6 1.9254 -3.5526 -0.1331 15 8 2.9505 -3.6195 0.5119 16 6 1.2482 -4.8137 -0.6045 17 6 2.0521 -6.0291 -0.1384 18 6 1.3643 -7.3094 -0.6165 19 6 2.1679 -8.5249 -0.1498 20 7 1.5077 -9.7541 -0.6094 21 6 1.2542 -9.7072 -2.0721 22 6 1.0724 -11.1992 -2.4485 23 6 2.1077 -11.9115 -1.5480 24 6 2.3712 -10.9342 -0.3874 25 1 -0.4850 0.8400 0.0004 26 1 0.1017 -1.3018 -1.7068 27 1 0.1433 -3.0638 -1.9553 28 1 -3.0022 -2.4922 -0.1582 29 1 1.1927 -4.8111 -1.6931 30 1 0.2416 -4.8624 -0.1895 31 1 3.0586 -5.9801 -0.5538 32 1 2.1081 -6.0319 0.9502 33 1 0.3578 -7.3582 -0.2007 34 1 1.3080 -7.3068 -1.7050 35 1 3.1743 -8.4763 -0.5653 36 1 2.2238 -8.5273 0.9388 37 1 0.3470 -9.1428 -2.2875 38 1 2.1084 -9.2794 -2.5971 39 1 1.3007 -11.3619 -3.5017 40 1 0.0622 -11.5355 -2.2152 41 1 3.0275 -12.0969 -2.1026 42 1 1.6985 -12.8478 -1.1686 43 1 3.4187 -10.6329 -0.3862 44 1 2.1194 -11.4050 0.5628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:24 Heat of formation + Delta-G solvation = -124.735153 kcal Electronic energy + Delta-G solvation = -24618.542683 eV Core-core repulsion = 20956.784359 eV Total energy + Delta-G solvation = -3661.758324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.48235 -39.12765 -38.17099 -35.43819 -34.89737 -34.36890 -32.05578 -31.54131 -29.18020 -28.23528 -27.57767 -25.07409 -23.44289 -21.75878 -21.09719 -20.91243 -20.22884 -18.71484 -17.18022 -16.88814 -16.32558 -16.08563 -15.94146 -15.76469 -15.30339 -14.64326 -14.45096 -14.24781 -14.08650 -13.92524 -13.18799 -13.08827 -12.68873 -12.54290 -12.15163 -11.92210 -11.68271 -11.63313 -11.59343 -11.51507 -11.34222 -11.02447 -11.00067 -10.85851 -10.78107 -10.65385 -10.43555 -10.38595 -10.28681 -10.18662 -9.63833 -9.04264 -8.53634 -8.48062 -7.90731 -6.44312 -3.88350 3.14387 3.24392 3.29916 3.45117 3.66467 3.84959 4.08787 4.25652 4.43450 4.49910 4.70474 4.78135 5.02424 5.08196 5.12099 5.13824 5.30117 5.38767 5.46680 5.54512 5.57387 5.61252 5.69632 5.73730 5.78496 5.80878 5.87815 5.94335 6.01303 6.10961 6.17188 6.21454 6.45146 6.59912 6.61002 6.71722 6.77519 6.94767 7.48774 7.55421 8.00278 8.38109 9.02774 9.10477 9.32361 9.86684 10.64764 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.003024 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.393560 B = 9257.418728 C = 9937.427121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.028 3.972 3 Si 0.929 3.071 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.436 5.436 10 C 0.147 3.853 11 C 0.489 3.511 12 O -0.504 6.504 13 O -0.535 6.535 14 C 0.461 3.539 15 O -0.577 6.577 16 C -0.133 4.133 17 C -0.096 4.096 18 C -0.119 4.119 19 C 0.047 3.953 20 N -0.520 5.520 21 C 0.033 3.967 22 C -0.125 4.125 23 C -0.131 4.131 24 C 0.034 3.966 25 H 0.270 0.730 26 H 0.128 0.872 27 H 0.077 0.923 28 H 0.392 0.608 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 -16.391 -7.507 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.175 4.175 3 Si 0.756 3.244 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.156 5.156 10 C 0.020 3.980 11 C 0.329 3.671 12 O -0.389 6.389 13 O -0.346 6.346 14 C 0.251 3.749 15 O -0.460 6.460 16 C -0.174 4.174 17 C -0.135 4.135 18 C -0.156 4.156 19 C -0.081 4.081 20 N -0.244 5.244 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.170 4.170 24 C -0.094 4.094 25 H 0.081 0.919 26 H 0.146 0.854 27 H 0.095 0.905 28 H 0.248 0.752 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.558 -16.297 -6.805 17.729 hybrid contribution 0.338 1.095 0.150 1.156 sum -1.220 -15.202 -6.655 16.640 Atomic orbital electron populations 1.69792 1.06018 1.27818 1.48812 1.25225 0.95321 0.99945 0.96962 0.85867 0.79502 0.80714 0.78298 1.20310 1.21128 1.19395 1.19735 0.97667 0.83435 1.42299 0.87491 1.43485 1.19634 1.05576 1.46880 1.20677 0.81393 1.04702 0.91253 1.23879 0.83139 0.70813 0.89254 1.90616 1.85581 1.44965 1.17765 1.84525 1.17426 1.86363 1.46278 1.20135 0.87267 0.84297 0.83243 1.90517 1.26173 1.86598 1.42732 1.21582 1.00335 0.94252 1.01185 1.21205 0.98851 0.91521 1.01896 1.21691 0.99938 0.93309 1.00700 1.22345 0.95591 0.89099 1.01031 1.64818 1.42274 1.02648 1.14663 1.23256 1.01128 0.96679 0.88453 1.22495 0.99801 0.94957 0.99068 1.22397 0.99275 0.98787 0.96492 1.22875 0.95519 0.91814 0.99238 0.91931 0.85384 0.90512 0.75196 0.90586 0.90517 0.91600 0.91318 0.91219 0.92093 0.94615 0.90456 0.89782 0.93665 0.91198 0.90782 0.91667 0.91130 0.93813 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.30 9.25 55.50 0.51 -22.79 16 2 C 0.03 0.72 4.89 -17.47 -0.09 0.64 16 3 Si 0.93 20.63 29.60 -169.99 -5.03 15.60 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.42 9.35 -14.93 -0.14 -8.56 16 8 H 0.11 3.12 7.37 -52.49 -0.39 2.73 16 9 N -0.44 -11.03 2.18 -116.09 -0.25 -11.28 16 10 C 0.15 3.17 4.97 -5.19 -0.03 3.14 16 11 C 0.49 10.82 5.87 36.01 0.21 11.03 16 12 O -0.50 -13.18 16.81 -18.75 -0.32 -13.50 16 13 O -0.53 -9.55 13.42 -39.25 -0.53 -10.08 16 14 C 0.46 11.26 7.42 -10.98 -0.08 11.17 16 15 O -0.58 -16.01 15.62 5.54 0.09 -15.92 16 16 C -0.13 -2.44 4.31 -27.89 -0.12 -2.56 16 17 C -0.10 -1.57 4.50 -26.73 -0.12 -1.69 16 18 C -0.12 -1.53 4.87 -26.73 -0.13 -1.66 16 19 C 0.05 0.57 5.03 -3.82 -0.02 0.55 16 20 N -0.52 -5.85 5.40 -230.45 -1.24 -7.10 16 21 C 0.03 0.32 5.10 -1.90 -0.01 0.31 16 22 C -0.13 -1.01 7.06 -24.87 -0.18 -1.18 16 23 C -0.13 -1.03 6.93 -25.37 -0.18 -1.20 16 24 C 0.03 0.32 6.70 -2.75 -0.02 0.30 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.13 2.88 6.34 -51.93 -0.33 2.55 16 27 H 0.08 1.33 6.69 -51.93 -0.35 0.98 16 28 H 0.39 5.38 9.10 45.56 0.41 5.79 16 29 H 0.08 1.18 7.42 -51.93 -0.39 0.80 16 30 H 0.08 1.41 7.52 -51.93 -0.39 1.02 16 31 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.07 1.24 8.10 -51.93 -0.42 0.81 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.72 6.79 -51.93 -0.35 0.37 16 35 H 0.04 0.43 7.81 -51.93 -0.41 0.02 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.82 7.66 -51.93 -0.40 0.42 16 38 H 0.05 0.45 8.00 -51.93 -0.42 0.03 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.41 7.57 -51.93 -0.39 0.02 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -33.55 354.37 -8.64 -42.20 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.32 Total: 7.25 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -0.89 Total: 10.29 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: -0.98 Total: -41.17 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.76 Total: -39.50 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.55 -8.64 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.539 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds