Wall clock time and date at job start Tue Mar 31 2020 03:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.46812 * 2 1 4 4 C 1.42906 * 113.99897 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47213 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.47133 * 65.00287 * 5 4 3 7 7 N 1.41598 * 113.99949 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99627 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00349 * 359.97438 * 8 7 6 10 10 N 1.34787 * 119.99663 * 179.97438 * 8 7 6 11 11 C 1.40196 * 119.99563 * 179.97438 * 10 8 7 12 12 C 1.40395 * 125.97533 * 359.97438 * 11 10 8 13 13 C 1.35243 * 107.86535 * 179.71691 * 12 11 10 14 14 N 1.34960 * 107.86064 * 0.42509 * 13 12 11 15 15 C 1.46500 * 125.97985 * 179.83521 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71356 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 N 1.31213 * 125.96849 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.47267 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47147 * 299.99692 * 1 2 3 27 27 H 1.09002 * 109.47580 * 59.99751 * 1 2 3 28 28 H 1.09001 * 109.46643 * 240.00172 * 2 1 3 29 29 H 1.09000 * 109.47087 * 120.00405 * 2 1 3 30 30 H 1.09001 * 109.47050 * 60.00122 * 4 3 2 31 31 H 1.09001 * 109.46747 * 300.00375 * 4 3 2 32 32 H 1.08996 * 109.47369 * 305.00359 * 5 4 3 33 33 H 1.09001 * 109.47494 * 184.99826 * 5 4 3 34 34 H 0.96998 * 120.00271 * 359.97438 * 7 6 5 35 35 H 0.96998 * 119.99666 * 359.97438 * 10 8 7 36 36 H 1.08003 * 126.06887 * 0.02562 * 12 11 10 37 37 H 1.08007 * 126.06985 * 180.26350 * 13 12 11 38 38 H 1.09004 * 109.47078 * 4.72118 * 15 14 13 39 39 H 1.08993 * 109.47364 * 244.71890 * 15 14 13 40 40 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3986 3.5447 1.2218 7 7 3.7165 4.9208 1.3235 8 6 3.3691 5.6128 2.4267 9 8 2.7824 5.0556 3.3343 10 7 3.6721 6.9226 2.5238 11 6 3.3102 7.6425 3.6710 12 6 2.6327 7.1282 4.7880 13 6 2.4785 8.1338 5.6790 14 7 3.0269 9.2462 5.1468 15 6 3.0764 10.5676 5.7773 16 6 4.5052 11.0434 5.8353 17 1 5.2971 10.4236 5.4416 18 6 4.8014 12.2699 6.3911 19 7 3.8365 13.0270 6.8658 20 14 6.5723 12.8600 6.4624 21 1 7.1905 12.4174 7.7380 22 1 7.3307 12.2889 5.3205 23 1 6.6036 14.3426 6.3854 24 7 3.5456 8.9149 3.8886 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9768 -0.8908 31 1 3.8340 0.9764 0.8892 32 1 3.3491 3.4419 -0.8411 33 1 4.9081 3.0256 -0.0899 34 1 4.1842 5.3654 0.5994 35 1 4.1404 7.3669 1.7999 36 1 2.2989 6.1090 4.9154 37 1 1.9989 8.0604 6.6440 38 1 2.6736 10.5032 6.7881 39 1 2.4826 11.2711 5.1937 40 1 2.9168 12.7208 6.8286 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775627701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:57 Heat of formation + Delta-G solvation = 19.454979 kcal Electronic energy + Delta-G solvation = -22928.551132 eV Core-core repulsion = 19169.505018 eV Total energy + Delta-G solvation = -3759.046114 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73288 -39.54091 -38.68571 -37.28466 -34.75409 -33.73698 -32.92610 -31.68965 -30.54679 -29.36403 -29.02977 -26.16765 -23.26933 -23.20580 -23.16492 -22.06557 -20.61540 -19.95340 -18.54052 -17.99606 -17.37917 -17.15515 -16.57294 -16.24453 -15.83549 -15.31567 -15.06106 -14.78005 -14.45919 -14.01695 -13.87335 -13.76749 -13.23861 -13.14030 -12.90096 -12.42664 -12.26029 -12.17090 -11.81796 -11.76978 -11.64965 -11.30490 -11.13024 -10.79569 -10.45712 -10.16793 -10.12742 -10.05902 -9.72460 -9.12796 -8.95690 -8.55977 -8.16929 -7.46677 -6.56087 -4.29961 1.29990 2.60501 3.06890 3.14468 3.20589 3.37962 3.41923 3.58700 3.78296 3.97156 4.24503 4.42139 4.43984 4.60561 4.65839 4.73531 4.89131 4.91142 4.97137 5.17070 5.17953 5.34006 5.42645 5.54024 5.72410 5.77613 6.10993 6.36292 6.47527 6.51305 6.65405 6.73452 6.81316 6.97119 7.40826 7.63712 7.85786 7.87610 8.37304 8.57023 8.57582 8.64914 9.38240 10.81477 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.002214 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.269072 B =12643.945222 C =13193.747321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.382 6.382 4 C 0.072 3.928 5 C 0.032 3.968 6 O -0.114 6.114 7 N -0.614 5.614 8 C 0.731 3.269 9 O -0.546 6.546 10 N -0.635 5.635 11 C 0.280 3.720 12 C -0.283 4.283 13 C 0.052 3.948 14 N -0.318 5.318 15 C 0.249 3.751 16 C -0.607 4.607 17 H 0.064 0.936 18 C 0.022 3.978 19 N -0.906 5.906 20 Si 1.080 2.920 21 H -0.286 1.286 22 H -0.287 1.287 23 H -0.282 1.282 24 N -0.303 5.303 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.404 0.596 35 H 0.408 0.592 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 -23.265 -16.027 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.301 6.301 4 C -0.007 4.007 5 C -0.046 4.046 6 O -0.117 6.117 7 N -0.320 5.320 8 C 0.430 3.570 9 O -0.419 6.419 10 N -0.289 5.289 11 C 0.027 3.973 12 C -0.314 4.314 13 C -0.098 4.098 14 N -0.100 5.100 15 C 0.131 3.869 16 C -0.645 4.645 17 H 0.082 0.918 18 C -0.183 4.183 19 N -0.541 5.541 20 Si 0.907 3.093 21 H -0.212 1.212 22 H -0.213 1.213 23 H -0.208 1.208 24 N -0.134 5.134 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.243 0.757 35 H 0.243 0.757 36 H 0.181 0.819 37 H 0.186 0.814 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.416 -21.330 -14.966 26.060 hybrid contribution -0.536 -1.911 -1.221 2.330 sum -0.952 -23.241 -16.187 28.339 Atomic orbital electron populations 1.21749 0.93511 1.02268 1.03476 1.22483 0.95946 0.83423 1.00036 1.88000 1.20005 1.26702 1.95429 1.22397 0.82827 0.93727 1.01712 1.23085 0.99754 0.93383 0.88389 1.90677 1.79945 1.03873 1.37187 1.45913 1.65334 1.00007 1.20717 1.14900 0.80059 0.80319 0.81695 1.90896 1.44801 1.68131 1.38058 1.41006 1.61405 1.07173 1.19306 1.18665 1.00066 0.90796 0.87813 1.21551 1.13596 1.01859 0.94435 1.22557 1.00369 0.86934 0.99937 1.48760 1.40370 1.09931 1.10963 1.19760 1.00005 0.75262 0.91873 1.22138 0.91560 1.06483 1.44334 0.91779 1.25922 1.06599 0.92821 0.92924 1.70818 1.01192 1.38943 1.43195 0.83379 0.73245 0.76210 0.76482 1.21232 1.21270 1.20752 1.77346 1.24012 1.11032 1.00998 0.91052 0.91481 0.91864 0.93445 0.93146 0.90772 0.91785 0.90962 0.90323 0.75664 0.75697 0.81929 0.81435 0.93579 0.94760 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.40 6.66 37.16 0.25 0.65 16 3 O -0.38 -3.75 10.31 -40.07 -0.41 -4.17 16 4 C 0.07 0.49 6.32 37.16 0.23 0.73 16 5 C 0.03 0.23 6.61 37.16 0.25 0.48 16 6 O -0.11 -1.43 11.07 -34.80 -0.39 -1.81 16 7 N -0.61 -7.18 6.39 27.64 0.18 -7.00 16 8 C 0.73 11.73 8.68 -86.91 -0.75 10.98 16 9 O -0.55 -11.05 13.88 -12.86 -0.18 -11.23 16 10 N -0.64 -10.04 5.46 -15.50 -0.08 -10.12 16 11 C 0.28 5.75 8.11 -154.36 -1.25 4.50 16 12 C -0.28 -5.82 9.61 -39.84 -0.38 -6.21 16 13 C 0.05 1.05 11.44 -17.24 -0.20 0.86 16 14 N -0.32 -7.52 3.67 -62.56 -0.23 -7.75 16 15 C 0.25 6.34 5.57 -5.19 -0.03 6.31 16 16 C -0.61 -17.12 9.24 -34.44 -0.32 -17.44 16 17 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 18 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 19 N -0.91 -26.44 13.65 55.43 0.76 -25.69 16 20 Si 1.08 25.02 29.90 -169.99 -5.08 19.93 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 N -0.30 -7.06 12.42 31.44 0.39 -6.67 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.40 2.91 8.56 -40.82 -0.35 2.56 16 35 H 0.41 4.94 8.84 -40.82 -0.36 4.58 16 36 H 0.16 3.33 5.91 -52.48 -0.31 3.02 16 37 H 0.17 2.79 8.06 -52.48 -0.42 2.37 16 38 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 39 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 40 H 0.27 7.64 7.22 -40.82 -0.29 7.34 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -37.09 351.65 -7.25 -44.34 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.58 Total: 4.12 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.92 Total: 0.75 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 1.01 Total: -57.23 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.98 Total: -17.21 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.09 -7.25 -44.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775627701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.796 kcal (2) G-P(sol) polarization free energy of solvation -37.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds