Wall clock time and date at job start Tue Mar 31 2020 03:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.46812 * 2 1 4 4 C 1.42906 * 113.99897 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47213 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.47133 * 65.00287 * 5 4 3 7 7 N 1.41598 * 113.99949 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99627 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00349 * 359.97438 * 8 7 6 10 10 N 1.34787 * 119.99663 * 179.97438 * 8 7 6 11 11 C 1.40196 * 119.99563 * 179.97438 * 10 8 7 12 12 C 1.40395 * 125.97533 * 359.97438 * 11 10 8 13 13 C 1.35243 * 107.86535 * 179.71691 * 12 11 10 14 14 N 1.34960 * 107.86064 * 0.42509 * 13 12 11 15 15 C 1.46500 * 125.97985 * 179.83521 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71356 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 N 1.31213 * 125.96849 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.47267 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47147 * 299.99692 * 1 2 3 27 27 H 1.09002 * 109.47580 * 59.99751 * 1 2 3 28 28 H 1.09001 * 109.46643 * 240.00172 * 2 1 3 29 29 H 1.09000 * 109.47087 * 120.00405 * 2 1 3 30 30 H 1.09001 * 109.47050 * 60.00122 * 4 3 2 31 31 H 1.09001 * 109.46747 * 300.00375 * 4 3 2 32 32 H 1.08996 * 109.47369 * 305.00359 * 5 4 3 33 33 H 1.09001 * 109.47494 * 184.99826 * 5 4 3 34 34 H 0.96998 * 120.00271 * 359.97438 * 7 6 5 35 35 H 0.96998 * 119.99666 * 359.97438 * 10 8 7 36 36 H 1.08003 * 126.06887 * 0.02562 * 12 11 10 37 37 H 1.08007 * 126.06985 * 180.26350 * 13 12 11 38 38 H 1.09004 * 109.47078 * 4.72118 * 15 14 13 39 39 H 1.08993 * 109.47364 * 244.71890 * 15 14 13 40 40 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3986 3.5447 1.2218 7 7 3.7165 4.9208 1.3235 8 6 3.3691 5.6128 2.4267 9 8 2.7824 5.0556 3.3343 10 7 3.6721 6.9226 2.5238 11 6 3.3102 7.6425 3.6710 12 6 2.6327 7.1282 4.7880 13 6 2.4785 8.1338 5.6790 14 7 3.0269 9.2462 5.1468 15 6 3.0764 10.5676 5.7773 16 6 4.5052 11.0434 5.8353 17 1 5.2971 10.4236 5.4416 18 6 4.8014 12.2699 6.3911 19 7 3.8365 13.0270 6.8658 20 14 6.5723 12.8600 6.4624 21 1 7.1905 12.4174 7.7380 22 1 7.3307 12.2889 5.3205 23 1 6.6036 14.3426 6.3854 24 7 3.5456 8.9149 3.8886 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9768 -0.8908 31 1 3.8340 0.9764 0.8892 32 1 3.3491 3.4419 -0.8411 33 1 4.9081 3.0256 -0.0899 34 1 4.1842 5.3654 0.5994 35 1 4.1404 7.3669 1.7999 36 1 2.2989 6.1090 4.9154 37 1 1.9989 8.0604 6.6440 38 1 2.6736 10.5032 6.7881 39 1 2.4826 11.2711 5.1937 40 1 2.9168 12.7208 6.8286 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775627701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:57 Heat of formation + Delta-G solvation = -6.893381 kcal Electronic energy + Delta-G solvation = -22929.693683 eV Core-core repulsion = 19169.505018 eV Total energy + Delta-G solvation = -3760.188665 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30469 -40.86401 -39.37231 -38.15405 -36.37767 -35.57112 -33.95228 -32.71290 -31.92410 -30.99918 -29.78037 -28.07425 -25.17190 -23.80895 -23.70458 -23.49130 -22.23385 -21.40139 -19.57913 -19.31445 -19.08728 -18.02304 -17.96106 -17.05172 -16.97215 -16.57638 -16.20264 -16.00361 -15.65725 -15.56427 -15.40021 -14.98214 -14.53918 -14.18430 -13.93009 -13.89312 -13.68743 -13.40019 -13.20986 -12.71044 -12.59820 -12.41809 -12.22752 -12.06375 -11.95824 -11.89722 -11.71872 -11.24964 -10.99477 -10.66828 -10.60606 -10.13309 -9.81199 -9.16601 -8.75150 -6.53381 0.22866 0.98866 1.52288 1.59622 1.60859 1.66941 1.80735 2.30120 2.49575 2.64233 2.69036 3.03534 3.51098 3.85279 3.91510 4.10993 4.14867 4.16923 4.25507 4.40188 4.46444 4.49476 4.57590 4.62624 4.65747 4.79259 4.86214 4.86466 5.01770 5.11217 5.25114 5.38020 5.59611 5.80507 5.87083 5.95648 6.22677 6.29119 6.43570 6.59358 7.02090 7.22300 7.36891 8.60751 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.002214 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.269072 B =12643.945222 C =13193.747321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.416 6.416 4 C 0.067 3.933 5 C 0.024 3.976 6 O -0.146 6.146 7 N -0.591 5.591 8 C 0.730 3.270 9 O -0.591 6.591 10 N -0.623 5.623 11 C 0.290 3.710 12 C -0.292 4.292 13 C 0.058 3.942 14 N -0.343 5.343 15 C 0.259 3.741 16 C -0.620 4.620 17 H 0.046 0.954 18 C -0.020 4.020 19 N -0.924 5.924 20 Si 1.123 2.877 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.276 1.276 24 N -0.341 5.341 25 H 0.092 0.908 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.427 0.573 35 H 0.426 0.574 36 H 0.166 0.834 37 H 0.203 0.797 38 H 0.055 0.945 39 H 0.018 0.982 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 -24.611 -17.285 30.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.337 6.337 4 C -0.011 4.011 5 C -0.053 4.053 6 O -0.150 6.150 7 N -0.297 5.297 8 C 0.430 3.570 9 O -0.467 6.467 10 N -0.279 5.279 11 C 0.035 3.965 12 C -0.323 4.323 13 C -0.090 4.090 14 N -0.125 5.125 15 C 0.139 3.861 16 C -0.658 4.658 17 H 0.064 0.936 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.944 3.056 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.201 1.201 24 N -0.172 5.172 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.271 0.729 35 H 0.264 0.736 36 H 0.183 0.817 37 H 0.219 0.781 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.823 -22.706 -16.304 27.966 hybrid contribution -0.956 -1.679 -0.959 2.157 sum -0.133 -24.386 -17.262 29.878 Atomic orbital electron populations 1.21787 0.93697 1.03298 1.02313 1.22643 0.95940 0.82660 1.01187 1.87957 1.21722 1.28293 1.95690 1.22641 0.81723 0.93548 1.03183 1.23479 1.01784 0.93291 0.86702 1.90680 1.80711 1.03459 1.40130 1.45527 1.63985 1.00297 1.19910 1.14995 0.79697 0.80124 0.82218 1.90861 1.46804 1.69007 1.40035 1.40893 1.61234 1.07164 1.18572 1.18928 0.98504 0.90211 0.88888 1.21706 1.13898 1.01962 0.94719 1.23153 0.99048 0.85735 1.01036 1.48562 1.42269 1.09953 1.11699 1.19445 0.98385 0.76178 0.92043 1.22313 0.92496 1.06659 1.44351 0.93551 1.27281 1.09720 0.92951 0.92015 1.70915 1.01291 1.39422 1.44419 0.82834 0.69201 0.76123 0.77446 1.19460 1.20434 1.20133 1.77266 1.25922 1.12480 1.01508 0.88973 0.93425 0.92178 0.91211 0.92962 0.87287 0.92140 0.89947 0.87183 0.72921 0.73596 0.81662 0.78055 0.92761 0.96414 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 0.66 6.66 71.98 0.48 1.14 16 3 O -0.42 -7.72 10.31 -144.35 -1.49 -9.21 16 4 C 0.07 0.78 6.32 71.98 0.45 1.24 16 5 C 0.02 0.29 6.61 71.98 0.48 0.77 16 6 O -0.15 -3.45 11.07 -16.47 -0.18 -3.63 16 7 N -0.59 -12.76 6.39 -184.73 -1.18 -13.94 16 8 C 0.73 22.73 8.68 179.05 1.55 24.28 16 9 O -0.59 -23.79 13.88 13.36 0.19 -23.60 16 10 N -0.62 -19.07 5.46 -321.22 -1.75 -20.82 16 11 C 0.29 11.81 8.11 133.31 1.08 12.89 16 12 C -0.29 -11.89 9.61 22.10 0.21 -11.68 16 13 C 0.06 2.35 11.44 83.52 0.96 3.31 16 14 N -0.34 -16.28 3.67 -351.84 -1.29 -17.57 16 15 C 0.26 13.36 5.57 85.64 0.48 13.84 16 16 C -0.62 -35.31 9.24 25.60 0.24 -35.07 16 17 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 18 C -0.02 -1.13 5.46 84.65 0.46 -0.66 16 19 N -0.92 -54.08 13.65 21.45 0.29 -53.78 16 20 Si 1.12 49.72 29.90 68.60 2.05 51.78 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 24 N -0.34 -15.95 12.42 -54.44 -0.68 -16.63 16 25 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.43 5.03 8.56 -92.71 -0.79 4.23 16 35 H 0.43 9.68 8.84 -92.71 -0.82 8.87 16 36 H 0.17 6.73 5.91 -2.91 -0.02 6.72 16 37 H 0.20 6.41 8.06 -2.91 -0.02 6.39 16 38 H 0.05 2.69 7.94 -2.39 -0.02 2.67 16 39 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 40 H 0.26 15.12 7.22 -92.71 -0.67 14.45 16 Total: -1.00 -81.03 351.65 2.65 -78.39 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.44 Total: 20.18 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 7.13 Total: 8.84 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -4.61 Total: -122.74 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.49 Total: -36.44 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.05 Total: 51.78 kcal Total: -81.03 2.65 -78.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775627701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.492 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds