Wall clock time and date at job start Tue Mar 31 2020 04:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00120 * 2 1 4 4 H 1.48505 * 109.47097 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47424 * 300.00589 * 3 2 1 6 6 H 1.48500 * 109.47001 * 60.00365 * 3 2 1 7 7 C 1.37883 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99866 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46816 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99968 * 180.02562 * 10 9 7 12 12 O 1.21587 * 119.99865 * 5.15178 * 11 10 9 13 13 N 1.35103 * 119.99972 * 185.16406 * 11 10 9 14 14 C 1.50016 * 120.36681 * 173.31402 * 13 11 10 15 15 C 1.46766 * 107.62207 * 110.56937 * 14 13 11 16 16 O 1.41003 * 115.12004 * 59.06314 * 15 14 13 17 17 C 1.38296 * 114.13976 * 272.27458 * 16 15 14 18 18 C 1.54493 * 110.12519 * 212.07747 * 17 16 15 19 19 C 1.52830 * 109.18296 * 65.62916 * 18 17 16 20 20 O 1.42982 * 109.17751 * 60.06350 * 19 18 17 21 21 C 1.42916 * 113.52738 * 298.60991 * 20 19 18 22 22 C 1.52969 * 109.72660 * 60.04791 * 21 20 19 23 23 C 1.55168 * 111.47551 * 95.00743 * 17 16 15 24 24 C 1.42886 * 120.53679 * 355.18673 * 13 11 10 25 25 H 0.96996 * 119.99378 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47007 * 60.00713 * 9 7 2 27 27 H 1.08994 * 109.47265 * 300.00332 * 9 7 2 28 28 H 0.97002 * 120.00159 * 0.02562 * 10 9 7 29 29 H 1.09121 * 109.90546 * 230.26109 * 14 13 11 30 30 H 1.09148 * 109.89059 * 350.89920 * 14 13 11 31 31 H 1.10373 * 106.81419 * 178.22973 * 15 14 13 32 32 H 1.08397 * 109.14111 * 292.52156 * 15 14 13 33 33 H 1.08864 * 108.90868 * 305.67432 * 18 17 16 34 34 H 1.08834 * 108.95573 * 185.69870 * 18 17 16 35 35 H 1.08973 * 109.72209 * 300.10684 * 19 18 17 36 36 H 1.09018 * 109.61598 * 179.86350 * 19 18 17 37 37 H 1.09136 * 109.24431 * 179.97438 * 21 20 19 38 38 H 1.08916 * 109.26230 * 299.38991 * 21 20 19 39 39 H 1.09658 * 108.68651 * 61.22218 * 22 21 20 40 40 H 1.08466 * 109.82036 * 179.61901 * 22 21 20 41 41 H 1.09614 * 108.83106 * 78.81290 * 23 17 16 42 42 H 1.09572 * 108.89607 * 196.08916 * 23 17 16 43 43 H 1.09764 * 107.33888 * 135.54417 * 24 13 11 44 44 H 1.09790 * 107.29729 * 22.14112 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5623 -5.1069 -0.0961 13 7 2.6271 -5.9088 0.1043 14 6 2.1299 -7.3161 0.2550 15 6 2.4415 -8.0329 -0.9872 16 8 3.8098 -8.0788 -1.3246 17 6 4.2453 -6.9979 -2.0693 18 6 5.3735 -7.4343 -3.0302 19 6 4.8061 -8.4099 -4.0607 20 8 3.7676 -7.7616 -4.7992 21 6 2.6673 -7.3428 -3.9889 22 6 3.1542 -6.3538 -2.9284 23 6 4.8629 -5.8977 -1.1660 24 6 4.0350 -5.6651 0.1137 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 3.1567 -3.4355 -0.0002 29 1 2.6285 -7.7980 1.0976 30 1 1.0512 -7.3130 0.4219 31 1 2.0997 -9.0733 -0.8498 32 1 1.8431 -7.6240 -1.7932 33 1 6.1592 -7.9202 -2.4542 34 1 5.7706 -6.5540 -3.5321 35 1 4.3994 -9.2847 -3.5538 36 1 5.5964 -8.7208 -4.7443 37 1 1.9197 -6.8589 -4.6198 38 1 2.2223 -8.2136 -3.5095 39 1 3.5740 -5.4756 -3.4333 40 1 2.3191 -6.0298 -2.3167 41 1 5.8823 -6.1947 -0.8936 42 1 4.9269 -4.9646 -1.7367 43 1 4.4683 -6.2818 0.9117 44 1 4.1838 -4.6229 0.4254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787371678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:32 Heat of formation + Delta-G solvation = -125.120556 kcal Electronic energy + Delta-G solvation = -26272.579854 eV Core-core repulsion = 22610.804817 eV Total energy + Delta-G solvation = -3661.775036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.24458 -40.71400 -38.73822 -36.47571 -36.28069 -35.01527 -34.25734 -32.36529 -31.48536 -30.26493 -28.73628 -26.45241 -25.11598 -24.68522 -23.34821 -22.77267 -21.01489 -20.82746 -19.58589 -18.15605 -18.10148 -17.65478 -17.14416 -16.76567 -16.65447 -16.37876 -16.18237 -16.06191 -15.48250 -15.21769 -14.87831 -14.60921 -14.26915 -14.15987 -13.98002 -13.69032 -13.46032 -13.27650 -13.17622 -12.89034 -12.83360 -12.75021 -12.34126 -12.25005 -12.06028 -11.94466 -11.71205 -11.46527 -11.15637 -10.97955 -10.84562 -10.82608 -10.21247 -10.02666 -9.41571 -8.29900 -6.46314 1.42209 1.43672 1.56435 1.69710 2.16028 2.37153 2.73052 2.93462 3.05283 3.15541 3.57568 3.59753 3.71578 3.94358 3.97246 4.09847 4.13324 4.23271 4.29780 4.39286 4.44275 4.53211 4.61486 4.69037 4.72643 4.78156 4.83205 4.85683 4.91791 4.98221 5.04265 5.06772 5.08205 5.25186 5.27170 5.46510 5.55273 5.66276 5.83535 6.13116 6.18181 6.46619 6.65105 7.16971 7.24031 7.65227 8.82622 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.004078 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.069447 B = 6864.306770 C = 7296.633232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.287 3.713 10 N -0.724 5.724 11 C 0.694 3.306 12 O -0.643 6.643 13 N -0.620 5.620 14 C 0.102 3.898 15 C 0.032 3.968 16 O -0.336 6.336 17 C 0.123 3.877 18 C -0.143 4.143 19 C 0.055 3.945 20 O -0.399 6.399 21 C 0.063 3.937 22 C -0.180 4.180 23 C -0.152 4.152 24 C 0.107 3.893 25 H 0.269 0.731 26 H -0.015 1.015 27 H -0.015 1.015 28 H 0.401 0.599 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.463 -18.118 -3.915 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.592 4.592 8 H 0.098 0.902 9 C 0.163 3.837 10 N -0.379 5.379 11 C 0.396 3.604 12 O -0.525 6.525 13 N -0.358 5.358 14 C -0.019 4.019 15 C -0.045 4.045 16 O -0.253 6.253 17 C 0.082 3.918 18 C -0.180 4.180 19 C -0.021 4.021 20 O -0.318 6.318 21 C -0.014 4.014 22 C -0.218 4.218 23 C -0.191 4.191 24 C -0.018 4.018 25 H 0.078 0.922 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.238 0.762 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.591 -18.259 -4.108 23.130 hybrid contribution -0.219 1.500 0.306 1.546 sum 13.373 -16.759 -3.802 21.775 Atomic orbital electron populations 1.70147 1.08235 1.28503 1.49926 1.26033 0.95755 1.03754 0.93807 0.85118 0.79051 0.77351 0.77737 1.17721 1.20434 1.20345 1.21586 0.94131 0.90505 1.52943 0.90155 1.18399 0.88047 0.83352 0.93862 1.45521 1.10815 1.04019 1.77534 1.16325 0.84826 0.81525 0.77708 1.90821 1.16764 1.84617 1.60301 1.47139 1.05403 1.05995 1.77259 1.21806 1.01610 0.78582 0.99899 1.21503 0.83360 1.02802 0.96872 1.86733 1.24752 1.42410 1.71415 1.21103 0.93555 0.86902 0.90220 1.22612 0.97520 1.01196 0.96698 1.22712 0.90295 0.94377 0.94737 1.87985 1.30689 1.77950 1.35156 1.22562 0.88973 0.96860 0.93024 1.22772 1.00310 1.00075 0.98674 1.23495 1.00404 0.99121 0.96076 1.20930 0.80144 1.02134 0.98587 0.92220 0.99733 0.99689 0.76173 0.87892 0.89348 0.86594 0.92735 0.88181 0.89717 0.92279 0.87069 0.89288 0.92252 0.91032 0.91969 0.87596 0.91547 0.89687 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.98 42.42 29.54 68.60 2.03 44.45 16 4 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -30.43 9.28 25.60 0.24 -30.20 16 8 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 9 C 0.29 16.08 5.43 85.63 0.47 16.54 16 10 N -0.72 -32.06 5.40 -482.02 -2.60 -34.66 16 11 C 0.69 29.30 7.49 178.95 1.34 30.64 16 12 O -0.64 -32.87 15.85 -3.99 -0.06 -32.93 16 13 N -0.62 -18.63 1.81 -844.92 -1.53 -20.16 16 14 C 0.10 2.47 6.24 83.76 0.52 2.99 16 15 C 0.03 0.66 4.84 70.05 0.34 1.00 16 16 O -0.34 -6.73 9.28 -119.84 -1.11 -7.84 16 17 C 0.12 2.50 0.55 -9.52 -0.01 2.50 16 18 C -0.14 -2.30 4.76 31.05 0.15 -2.15 16 19 C 0.05 0.94 6.71 71.93 0.48 1.42 16 20 O -0.40 -9.34 10.81 -148.98 -1.61 -10.95 16 21 C 0.06 1.47 6.34 71.97 0.46 1.93 16 22 C -0.18 -4.58 3.88 30.61 0.12 -4.46 16 23 C -0.15 -2.95 5.13 31.74 0.16 -2.79 16 24 C 0.11 2.49 5.29 87.45 0.46 2.96 16 25 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.40 15.19 5.89 -92.71 -0.55 14.64 16 29 H 0.10 1.93 8.15 -2.32 -0.02 1.91 16 30 H 0.09 2.48 7.17 -2.31 -0.02 2.47 16 31 H 0.12 1.76 8.23 -1.65 -0.01 1.75 16 32 H 0.05 1.34 4.18 -2.70 -0.01 1.33 16 33 H 0.10 1.24 8.11 -2.46 -0.02 1.22 16 34 H 0.08 1.37 8.08 -2.47 -0.02 1.35 16 35 H 0.06 0.99 7.88 -2.40 -0.02 0.97 16 36 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.09 2.12 8.15 -2.31 -0.02 2.10 16 38 H 0.06 1.29 6.50 -2.43 -0.02 1.28 16 39 H 0.07 1.93 7.91 -2.04 -0.02 1.91 16 40 H 0.06 1.97 4.94 -2.67 -0.01 1.95 16 41 H 0.11 1.51 7.92 -2.06 -0.02 1.50 16 42 H 0.07 1.39 7.76 -2.08 -0.02 1.37 16 43 H 0.08 1.63 8.14 -1.98 -0.02 1.62 16 44 H 0.06 1.54 5.75 -1.97 -0.01 1.53 16 Total: -1.00 -72.74 333.81 1.06 -71.68 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.48 Total: 25.21 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 5.19 Total: 21.19 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -3.85 Total: -110.80 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -2.79 Total: -51.72 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -72.74 1.06 -71.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.445 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds