Wall clock time and date at job start Tue Mar 31 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47223 * 2 1 4 4 O 1.42904 * 109.46837 * 239.99957 * 2 1 3 5 5 C 1.52998 * 109.47016 * 119.99959 * 2 1 3 6 6 O 1.42904 * 109.47133 * 60.00223 * 5 2 1 7 7 N 1.41598 * 113.99949 * 180.02562 * 6 5 2 8 8 C 1.34779 * 119.99627 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00349 * 359.97438 * 8 7 6 10 10 N 1.34787 * 119.99663 * 179.97438 * 8 7 6 11 11 C 1.40196 * 119.99563 * 179.97438 * 10 8 7 12 12 C 1.40395 * 125.97533 * 359.97438 * 11 10 8 13 13 C 1.35243 * 107.86535 * 179.71691 * 12 11 10 14 14 N 1.34960 * 107.86064 * 0.42509 * 13 12 11 15 15 C 1.46500 * 125.97985 * 179.83521 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71356 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 N 1.31213 * 125.96849 * 179.97438 * 11 10 8 25 25 H 1.08996 * 109.47293 * 299.99699 * 1 2 3 26 26 H 1.08999 * 109.47224 * 59.99979 * 1 2 3 27 27 H 1.09006 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46899 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47038 * 300.00135 * 3 2 1 30 30 H 1.08996 * 109.46740 * 59.99962 * 3 2 1 31 31 H 0.96698 * 113.99565 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47369 * 300.00296 * 5 2 1 33 33 H 1.09001 * 109.47494 * 179.97438 * 5 2 1 34 34 H 0.96998 * 120.00271 * 359.97438 * 7 6 5 35 35 H 0.96998 * 119.99666 * 359.97438 * 10 8 7 36 36 H 1.08003 * 126.06887 * 0.02562 * 12 11 10 37 37 H 1.08007 * 126.06985 * 180.26350 * 13 12 11 38 38 H 1.09004 * 109.47078 * 4.72118 * 15 14 13 39 39 H 1.08993 * 109.47364 * 244.71890 * 15 14 13 40 40 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7212 1.2492 6 8 1.5636 -2.0686 1.2492 7 7 1.9810 -2.8270 2.3698 8 6 1.6001 -4.1140 2.4920 9 8 0.8978 -4.6238 1.6403 10 7 1.9977 -4.8361 3.5584 11 6 1.6011 -6.1747 3.6858 12 6 0.7947 -6.8855 2.7826 13 6 0.6483 -8.1431 3.2581 14 7 1.3260 -8.2270 4.4222 15 6 1.4287 -9.4140 5.2747 16 6 2.8812 -9.7418 5.5067 17 1 3.6509 -9.1270 5.0638 18 6 3.2276 -10.8263 6.2843 19 7 2.2904 -11.5717 6.8281 20 14 5.0281 -11.2321 6.5725 21 1 5.5014 -12.1611 5.5151 22 1 5.8301 -9.9830 6.5293 23 1 5.1841 -11.8747 7.9021 24 7 1.9187 -6.9823 4.6700 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.9702 -0.7122 -1.2327 32 1 1.6766 -0.2075 2.1392 33 1 3.1299 -0.7217 1.2491 34 1 2.5409 -2.4202 3.0494 35 1 2.5583 -4.4295 4.2376 36 1 0.3711 -6.4983 1.8677 37 1 0.0863 -8.9382 2.7907 38 1 0.9400 -10.2564 4.7850 39 1 0.9432 -9.2179 6.2306 40 1 1.3554 -11.3609 6.6787 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788036236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:23 Heat of formation + Delta-G solvation = -15.471911 kcal Electronic energy + Delta-G solvation = -23339.662894 eV Core-core repulsion = 19579.102237 eV Total energy + Delta-G solvation = -3760.560658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.31097 -40.89273 -39.75859 -37.72731 -36.37309 -35.57515 -33.95048 -33.12767 -31.97456 -30.99381 -28.33402 -28.15599 -27.13706 -25.16017 -23.49709 -22.27400 -21.74053 -21.25066 -19.67577 -19.28781 -19.04118 -17.98068 -17.71042 -17.22518 -16.71294 -16.46306 -16.00854 -15.86437 -15.63326 -15.49004 -15.06897 -14.92682 -14.33146 -14.17687 -13.91935 -13.69566 -13.46454 -13.22771 -13.19197 -13.09025 -12.65215 -12.60000 -12.27142 -12.01955 -11.96159 -11.76059 -11.70534 -11.32083 -11.04830 -10.99842 -10.67235 -10.13861 -9.81812 -9.17206 -8.75566 -6.53795 0.21219 0.98225 1.51998 1.59223 1.60416 1.65669 1.80304 2.29569 2.49059 2.62372 3.03084 3.21771 3.53085 3.64525 3.78604 3.85898 4.04807 4.14517 4.29414 4.38961 4.56932 4.63707 4.70142 4.78581 4.83122 4.85804 4.88228 4.97858 5.10143 5.20535 5.30179 5.37400 5.59106 5.79978 5.86512 5.95101 6.28550 6.43091 6.58445 6.81914 7.01446 7.21822 7.36519 8.60360 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.035530 B = 0.002360 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.868778 B =11861.255887 C =12293.206420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 C -0.167 4.167 4 O -0.576 6.576 5 C -0.006 4.006 6 O -0.138 6.138 7 N -0.593 5.593 8 C 0.730 3.270 9 O -0.591 6.591 10 N -0.623 5.623 11 C 0.290 3.710 12 C -0.292 4.292 13 C 0.058 3.942 14 N -0.343 5.343 15 C 0.259 3.741 16 C -0.620 4.620 17 H 0.046 0.954 18 C -0.020 4.020 19 N -0.924 5.924 20 Si 1.123 2.877 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.276 1.276 24 N -0.341 5.341 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.390 0.610 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.426 0.574 35 H 0.426 0.574 36 H 0.166 0.834 37 H 0.202 0.798 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 27.115 -10.501 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.094 3.906 3 C -0.225 4.225 4 O -0.384 6.384 5 C -0.083 4.083 6 O -0.141 6.141 7 N -0.299 5.299 8 C 0.429 3.571 9 O -0.467 6.467 10 N -0.279 5.279 11 C 0.035 3.965 12 C -0.323 4.323 13 C -0.090 4.090 14 N -0.125 5.125 15 C 0.140 3.860 16 C -0.658 4.658 17 H 0.064 0.936 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.944 3.056 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.201 1.201 24 N -0.172 5.172 25 H 0.109 0.891 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.240 0.760 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.269 0.731 35 H 0.264 0.736 36 H 0.183 0.817 37 H 0.219 0.781 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.506 25.325 -9.635 27.138 hybrid contribution -0.541 1.575 -0.630 1.781 sum 0.964 26.900 -10.264 28.808 Atomic orbital electron populations 1.21809 0.92800 1.02185 1.03534 1.21363 0.95478 0.91560 0.82203 1.22384 1.02704 0.92976 1.04395 1.86635 1.28253 1.79826 1.43674 1.24238 1.01210 0.81290 1.01560 1.90709 1.72258 1.23664 1.27447 1.45596 1.56566 1.07321 1.20434 1.15004 0.80396 0.80175 0.81487 1.90869 1.42406 1.70416 1.42968 1.40898 1.54563 1.07351 1.25050 1.18927 0.97593 0.85242 0.94774 1.21703 1.11532 0.93456 1.05579 1.23152 0.98032 0.99675 0.88131 1.48564 1.37071 1.08621 1.18245 1.19443 0.98482 0.79112 0.88993 1.22307 0.91699 1.15703 1.36078 0.93585 1.27281 1.10297 0.92352 0.92060 1.70915 1.01546 1.40226 1.43345 0.82837 0.68975 0.76374 0.77443 1.19470 1.20428 1.20113 1.77264 1.24481 0.91858 1.23552 0.89143 0.91405 0.93999 0.90331 0.90822 0.89572 0.75985 0.88719 0.89297 0.73052 0.73622 0.81684 0.78087 0.92786 0.96389 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.70 71.98 0.63 -1.53 16 2 C 0.14 1.63 1.18 -10.79 -0.01 1.61 16 3 C -0.17 -0.87 8.82 71.98 0.63 -0.23 16 4 O -0.58 -9.58 12.87 -139.78 -1.80 -11.38 16 5 C -0.01 -0.06 5.32 71.98 0.38 0.32 16 6 O -0.14 -3.07 10.33 -14.81 -0.15 -3.23 16 7 N -0.59 -12.16 6.39 -184.73 -1.18 -13.34 16 8 C 0.73 22.17 8.68 179.05 1.55 23.72 16 9 O -0.59 -23.46 13.88 13.36 0.19 -23.28 16 10 N -0.62 -18.69 5.46 -321.22 -1.75 -20.44 16 11 C 0.29 11.69 8.11 133.31 1.08 12.77 16 12 C -0.29 -11.81 9.61 22.10 0.21 -11.59 16 13 C 0.06 2.34 11.44 83.52 0.96 3.29 16 14 N -0.34 -16.21 3.67 -351.84 -1.29 -17.50 16 15 C 0.26 13.32 5.57 85.64 0.48 13.80 16 16 C -0.62 -35.19 9.24 25.60 0.24 -34.96 16 17 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 18 C -0.02 -1.14 5.46 84.65 0.46 -0.67 16 19 N -0.92 -53.95 13.65 21.45 0.29 -53.65 16 20 Si 1.12 49.60 29.90 68.60 2.05 51.66 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 24 N -0.34 -15.83 12.42 -54.44 -0.68 -16.50 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 0.90 7.68 -2.38 -0.02 0.88 16 28 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.39 3.41 9.04 -74.06 -0.67 2.74 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.43 4.62 8.56 -92.71 -0.79 3.82 16 35 H 0.43 9.43 8.84 -92.71 -0.82 8.61 16 36 H 0.17 6.69 5.91 -2.91 -0.02 6.68 16 37 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 38 H 0.05 2.67 7.94 -2.39 -0.02 2.65 16 39 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 40 H 0.26 15.08 7.22 -92.71 -0.67 14.41 16 Total: -1.00 -81.46 348.06 1.20 -80.26 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -1.09 Total: 20.88 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.61 Total: 6.52 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -4.61 Total: -121.44 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.77 Total: -37.89 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.66 kcal Total: -81.46 1.20 -80.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788036236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.790 kcal (2) G-P(sol) polarization free energy of solvation -81.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds