Wall clock time and date at job start Tue Mar 31 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46889 * 110.99857 * 2 1 4 4 N 1.46502 * 109.47264 * 293.95150 * 3 2 1 5 5 N 1.40165 * 126.14450 * 90.02590 * 4 3 2 6 6 C 1.32244 * 107.75709 * 179.97438 * 5 4 3 7 7 C 1.40115 * 125.92551 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00391 * 185.75504 * 7 6 5 9 9 C 1.40044 * 119.99826 * 5.75808 * 7 6 5 10 10 N 1.30792 * 120.00084 * 353.93868 * 9 7 6 11 11 Si 1.86799 * 119.99854 * 173.94565 * 9 7 6 12 12 H 1.48498 * 109.47402 * 94.97938 * 11 9 7 13 13 H 1.48497 * 109.47075 * 214.97840 * 11 9 7 14 14 H 1.48501 * 109.47234 * 334.97630 * 11 9 7 15 15 N 1.38498 * 108.14653 * 0.02562 * 6 5 4 16 16 C 1.46502 * 125.83223 * 180.02562 * 15 6 5 17 17 C 1.34724 * 108.32937 * 359.75769 * 15 6 5 18 18 S 1.71203 * 125.97283 * 180.24807 * 17 15 6 19 19 C 1.46902 * 110.99821 * 123.95234 * 2 1 3 20 20 H 1.08995 * 110.43387 * 301.62805 * 19 2 1 21 21 C 1.54811 * 110.48446 * 179.07906 * 19 2 1 22 22 C 1.55231 * 101.98467 * 220.51512 * 21 19 2 23 23 O 1.44377 * 103.56395 * 36.88838 * 22 21 19 24 24 C 1.43745 * 106.97662 * 320.00431 * 23 22 21 25 25 H 1.08996 * 109.47262 * 299.67891 * 1 2 3 26 26 H 1.09004 * 109.47288 * 59.68112 * 1 2 3 27 27 H 1.09005 * 109.47270 * 179.67643 * 1 2 3 28 28 H 1.09000 * 109.47217 * 53.95310 * 3 2 1 29 29 H 1.09003 * 109.47305 * 173.95713 * 3 2 1 30 30 H 0.97000 * 120.00053 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.47227 * 90.00116 * 16 15 6 32 32 H 1.09001 * 109.46592 * 209.99891 * 16 15 6 33 33 H 1.08993 * 109.47263 * 329.99644 * 16 15 6 34 34 H 1.08996 * 110.90942 * 338.64525 * 21 19 2 35 35 H 1.09004 * 110.90124 * 102.25001 * 21 19 2 36 36 H 1.08992 * 110.52312 * 278.38914 * 22 21 19 37 37 H 1.09008 * 110.77391 * 155.50397 * 22 21 19 38 38 H 1.08995 * 109.88172 * 267.09691 * 24 23 22 39 39 H 1.08996 * 110.00253 * 146.00991 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 7 1.6469 2.0282 -1.2623 5 7 0.4848 2.7700 -1.5149 6 6 0.5424 3.1964 -2.7654 7 6 -0.4257 3.9744 -3.4141 8 1 -0.3265 4.1924 -4.4673 9 6 -1.5219 4.4694 -2.6969 10 7 -1.7062 4.1093 -1.4531 11 14 -2.7211 5.6437 -3.5167 12 1 -3.8721 4.8777 -4.0585 13 1 -3.2085 6.6299 -2.5191 14 1 -2.0362 6.3574 -4.6243 15 7 1.7250 2.7395 -3.3229 16 6 2.1796 2.9884 -4.6932 17 6 2.3886 2.0320 -2.3879 18 16 3.9070 1.2685 -2.5943 19 6 1.9954 -0.7660 1.1376 20 1 1.6318 -0.3502 2.0772 21 6 3.5433 -0.7776 1.1132 22 6 3.8612 -2.2407 1.5230 23 8 2.8174 -3.0060 0.8832 24 6 1.6015 -2.2509 1.0166 25 1 -0.3633 0.5088 0.8928 26 1 -0.3634 0.5188 -0.8871 27 1 -0.3634 -1.0277 -0.0058 28 1 1.5610 1.9273 0.8309 29 1 3.0797 1.3444 0.1082 30 1 -2.4657 4.4519 -0.9564 31 1 2.7702 3.9042 -4.7194 32 1 2.7914 2.1518 -5.0306 33 1 1.3156 3.0944 -5.3491 34 1 3.9181 -0.5640 0.1122 35 1 3.9490 -0.0716 1.8379 36 1 3.8111 -2.3536 2.6059 37 1 4.8407 -2.5421 1.1517 38 1 1.0656 -2.5663 1.9118 39 1 0.9735 -2.3973 0.1379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794625652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:56 Heat of formation + Delta-G solvation = 49.074628 kcal Electronic energy + Delta-G solvation = -22766.353042 eV Core-core repulsion = 19451.344203 eV Total energy + Delta-G solvation = -3315.008838 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.89757 -39.53408 -36.67612 -34.24621 -33.79823 -31.06603 -30.73681 -28.90457 -27.66114 -26.61236 -25.90540 -23.67597 -22.23467 -21.48764 -20.91022 -20.11253 -17.77262 -16.97555 -16.71168 -16.16306 -15.70967 -15.42659 -15.07933 -14.92769 -14.76242 -14.28716 -14.05221 -13.65692 -13.10954 -12.68170 -12.33130 -12.22844 -12.17543 -11.84464 -11.74664 -11.58881 -11.37857 -11.16095 -11.08955 -10.96144 -10.85317 -10.63974 -10.52035 -10.08096 -9.59786 -9.56419 -9.24541 -8.91776 -8.17587 -7.10291 -6.75198 -6.64807 -5.18388 2.31560 2.59737 2.73989 2.88004 2.92003 3.35603 3.48701 3.61313 3.96573 4.02814 4.23547 4.56071 4.79119 4.97838 5.12457 5.15131 5.23203 5.32903 5.49572 5.54824 5.67840 5.73803 5.77208 5.83732 5.85415 5.87316 5.90510 6.09396 6.21781 6.33754 6.47890 6.55007 6.76358 6.90921 6.98664 7.09655 7.16515 7.58570 7.75771 8.20295 8.31227 9.11519 9.87288 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.004789 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.612905 B = 5845.662401 C = 6907.261620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.538 5.538 3 C 0.327 3.673 4 N -0.379 5.379 5 N -0.345 5.345 6 C 0.376 3.624 7 C -0.438 4.438 8 H 0.098 0.902 9 C 0.078 3.922 10 N -0.739 5.739 11 Si 0.927 3.073 12 H -0.266 1.266 13 H -0.273 1.273 14 H -0.258 1.258 15 N -0.517 5.517 16 C 0.101 3.899 17 C 0.480 3.520 18 S -0.704 6.704 19 C 0.058 3.942 20 H 0.054 0.946 21 C -0.159 4.159 22 C 0.051 3.949 23 O -0.374 6.374 24 C 0.058 3.942 25 H 0.027 0.973 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.285 0.715 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 -3.044 4.528 5.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C 0.115 3.885 4 N -0.165 5.165 5 N -0.177 5.177 6 C 0.127 3.873 7 C -0.479 4.479 8 H 0.115 0.885 9 C -0.149 4.149 10 N -0.363 5.363 11 Si 0.751 3.249 12 H -0.191 1.191 13 H -0.198 1.198 14 H -0.182 1.182 15 N -0.218 5.218 16 C -0.042 4.042 17 C 0.112 3.888 18 S -0.579 6.579 19 C -0.051 4.051 20 H 0.072 0.928 21 C -0.196 4.196 22 C -0.026 4.026 23 O -0.292 6.292 24 C -0.019 4.019 25 H 0.046 0.954 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.596 -3.950 5.038 6.429 hybrid contribution -1.370 1.612 -0.017 2.116 sum -0.774 -2.337 5.020 5.591 Atomic orbital electron populations 1.22449 0.86105 1.01191 1.02518 1.61933 1.08827 1.13568 1.42182 1.21682 1.00426 0.85033 0.81368 1.49053 1.16692 1.41160 1.09590 1.79331 1.01440 1.23138 1.13800 1.21267 0.84665 0.93193 0.88205 1.18363 1.03638 1.28569 0.97348 0.88451 1.25829 0.97947 0.96343 0.94750 1.69875 1.25203 1.32821 1.08383 0.85960 0.79677 0.79508 0.79797 1.19138 1.19765 1.18194 1.45979 1.18339 1.44974 1.12531 1.21749 1.00829 1.02808 0.78843 1.22890 0.93220 0.88718 0.84006 1.92695 1.08519 1.64682 1.92031 1.22938 0.95763 0.94614 0.91765 0.92770 1.23440 0.93937 0.97267 1.05003 1.23514 0.92443 0.90075 0.96533 1.88880 1.17826 1.44034 1.78508 1.23185 0.88002 0.88921 1.01781 0.95424 0.89636 0.91950 0.91945 0.87006 0.90413 0.91502 0.89192 0.89844 0.87339 0.90405 0.92690 0.88856 0.92534 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.20 60.07 0.55 0.99 16 2 N -0.54 -9.41 4.68 -236.95 -1.11 -10.52 16 3 C 0.33 6.22 5.71 -63.33 -0.36 5.86 16 4 N -0.38 -8.65 3.34 -65.05 -0.22 -8.87 16 5 N -0.35 -8.55 9.82 31.21 0.31 -8.24 16 6 C 0.38 9.10 7.49 -155.27 -1.16 7.94 16 7 C -0.44 -10.01 8.99 -38.20 -0.34 -10.35 16 8 H 0.10 2.01 7.08 -52.48 -0.37 1.64 16 9 C 0.08 1.71 5.49 -17.32 -0.10 1.62 16 10 N -0.74 -17.33 11.93 55.55 0.66 -16.67 16 11 Si 0.93 16.26 29.56 -169.99 -5.03 11.24 16 12 H -0.27 -4.64 7.11 56.52 0.40 -4.24 16 13 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 14 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 15 N -0.52 -11.67 3.17 -124.66 -0.39 -12.07 16 16 C 0.10 1.80 10.66 59.85 0.64 2.44 16 17 C 0.48 11.40 7.84 -86.94 -0.68 10.72 16 18 S -0.70 -17.20 29.50 -107.50 -3.17 -20.37 16 19 C 0.06 0.82 2.76 -66.18 -0.18 0.64 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.16 -2.13 5.47 -24.60 -0.13 -2.27 16 22 C 0.05 0.63 7.72 38.34 0.30 0.92 16 23 O -0.37 -5.67 11.52 -35.23 -0.41 -6.07 16 24 C 0.06 0.80 6.91 37.73 0.26 1.06 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.81 6.83 -51.93 -0.35 1.45 16 27 H 0.06 0.93 6.47 -51.93 -0.34 0.60 16 28 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 29 H 0.11 2.09 5.91 -51.93 -0.31 1.79 16 30 H 0.28 6.05 8.30 -40.82 -0.34 5.72 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.60 7.62 -51.93 -0.40 1.21 16 33 H 0.08 1.31 7.27 -51.93 -0.38 0.93 16 34 H 0.11 1.83 7.52 -51.93 -0.39 1.44 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.37 6.60 -51.93 -0.34 1.03 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -29.76 331.78 -10.96 -40.72 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.39 Total: 6.29 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: -1.22 Total: 19.56 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.75 Total: -56.36 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.41 Total: -6.07 kcal Atomic # 14 Polarization: 16.26 SS G_CDS: -5.03 Total: 11.24 kcal Atomic # 16 Polarization: -17.20 SS G_CDS: -3.17 Total: -20.37 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.76 -10.96 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.799 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds