Wall clock time and date at job start Tue Mar 31 2020 03:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46889 * 110.99857 * 2 1 4 4 N 1.46502 * 109.47264 * 293.95150 * 3 2 1 5 5 N 1.40165 * 126.14450 * 90.02590 * 4 3 2 6 6 C 1.32244 * 107.75709 * 179.97438 * 5 4 3 7 7 C 1.40115 * 125.92551 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00391 * 185.75504 * 7 6 5 9 9 C 1.40044 * 119.99826 * 5.75808 * 7 6 5 10 10 N 1.30792 * 120.00084 * 353.93868 * 9 7 6 11 11 Si 1.86799 * 119.99854 * 173.94565 * 9 7 6 12 12 H 1.48498 * 109.47402 * 94.97938 * 11 9 7 13 13 H 1.48497 * 109.47075 * 214.97840 * 11 9 7 14 14 H 1.48501 * 109.47234 * 334.97630 * 11 9 7 15 15 N 1.38498 * 108.14653 * 0.02562 * 6 5 4 16 16 C 1.46502 * 125.83223 * 180.02562 * 15 6 5 17 17 C 1.34724 * 108.32937 * 359.75769 * 15 6 5 18 18 S 1.71203 * 125.97283 * 180.24807 * 17 15 6 19 19 C 1.46902 * 110.99821 * 123.95234 * 2 1 3 20 20 H 1.08995 * 110.43387 * 301.62805 * 19 2 1 21 21 C 1.54811 * 110.48446 * 179.07906 * 19 2 1 22 22 C 1.55231 * 101.98467 * 220.51512 * 21 19 2 23 23 O 1.44377 * 103.56395 * 36.88838 * 22 21 19 24 24 C 1.43745 * 106.97662 * 320.00431 * 23 22 21 25 25 H 1.08996 * 109.47262 * 299.67891 * 1 2 3 26 26 H 1.09004 * 109.47288 * 59.68112 * 1 2 3 27 27 H 1.09005 * 109.47270 * 179.67643 * 1 2 3 28 28 H 1.09000 * 109.47217 * 53.95310 * 3 2 1 29 29 H 1.09003 * 109.47305 * 173.95713 * 3 2 1 30 30 H 0.97000 * 120.00053 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.47227 * 90.00116 * 16 15 6 32 32 H 1.09001 * 109.46592 * 209.99891 * 16 15 6 33 33 H 1.08993 * 109.47263 * 329.99644 * 16 15 6 34 34 H 1.08996 * 110.90942 * 338.64525 * 21 19 2 35 35 H 1.09004 * 110.90124 * 102.25001 * 21 19 2 36 36 H 1.08992 * 110.52312 * 278.38914 * 22 21 19 37 37 H 1.09008 * 110.77391 * 155.50397 * 22 21 19 38 38 H 1.08995 * 109.88172 * 267.09691 * 24 23 22 39 39 H 1.08996 * 110.00253 * 146.00991 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 7 1.6469 2.0282 -1.2623 5 7 0.4848 2.7700 -1.5149 6 6 0.5424 3.1964 -2.7654 7 6 -0.4257 3.9744 -3.4141 8 1 -0.3265 4.1924 -4.4673 9 6 -1.5219 4.4694 -2.6969 10 7 -1.7062 4.1093 -1.4531 11 14 -2.7211 5.6437 -3.5167 12 1 -3.8721 4.8777 -4.0585 13 1 -3.2085 6.6299 -2.5191 14 1 -2.0362 6.3574 -4.6243 15 7 1.7250 2.7395 -3.3229 16 6 2.1796 2.9884 -4.6932 17 6 2.3886 2.0320 -2.3879 18 16 3.9070 1.2685 -2.5943 19 6 1.9954 -0.7660 1.1376 20 1 1.6318 -0.3502 2.0772 21 6 3.5433 -0.7776 1.1132 22 6 3.8612 -2.2407 1.5230 23 8 2.8174 -3.0060 0.8832 24 6 1.6015 -2.2509 1.0166 25 1 -0.3633 0.5088 0.8928 26 1 -0.3634 0.5188 -0.8871 27 1 -0.3634 -1.0277 -0.0058 28 1 1.5610 1.9273 0.8309 29 1 3.0797 1.3444 0.1082 30 1 -2.4657 4.4519 -0.9564 31 1 2.7702 3.9042 -4.7194 32 1 2.7914 2.1518 -5.0306 33 1 1.3156 3.0944 -5.3491 34 1 3.9181 -0.5640 0.1122 35 1 3.9490 -0.0716 1.8379 36 1 3.8111 -2.3536 2.6059 37 1 4.8407 -2.5421 1.1517 38 1 1.0656 -2.5663 1.9118 39 1 0.9735 -2.3973 0.1379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794625652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:55 Heat of formation + Delta-G solvation = 31.181205 kcal Electronic energy + Delta-G solvation = -22767.128959 eV Core-core repulsion = 19451.344203 eV Total energy + Delta-G solvation = -3315.784756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.64182 -40.68536 -38.03342 -35.91346 -35.42984 -32.60373 -32.05284 -30.27830 -29.01364 -28.26988 -27.40445 -25.16724 -23.32899 -23.10509 -22.64120 -21.34442 -19.47568 -18.49922 -18.06906 -17.47646 -17.30263 -16.96010 -16.52650 -16.40629 -16.05766 -15.62141 -15.47369 -15.14092 -14.49920 -13.91818 -13.81024 -13.68910 -13.48707 -13.45789 -13.09676 -12.98360 -12.71373 -12.54695 -12.42388 -12.32766 -12.18086 -11.99428 -11.94516 -11.69633 -11.37065 -10.92967 -10.66941 -10.60853 -9.52648 -8.80934 -8.63978 -8.53444 -6.97195 0.53086 0.83533 1.27188 1.44821 1.60047 1.65747 1.85156 2.12403 2.40476 2.76694 2.99652 3.07902 3.43289 3.60339 3.89661 4.02076 4.05573 4.09932 4.24989 4.30958 4.36360 4.45550 4.46676 4.58602 4.64414 4.70694 4.74665 4.83187 4.85224 4.92249 5.01070 5.09417 5.19509 5.28019 5.66384 5.69302 5.90400 5.98132 6.16340 6.47971 6.56651 7.32193 8.23111 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.004789 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.612905 B = 5845.662401 C = 6907.261620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.552 5.552 3 C 0.325 3.675 4 N -0.375 5.375 5 N -0.369 5.369 6 C 0.353 3.647 7 C -0.452 4.452 8 H 0.117 0.883 9 C 0.038 3.962 10 N -0.774 5.774 11 Si 1.004 2.996 12 H -0.262 1.262 13 H -0.272 1.272 14 H -0.247 1.247 15 N -0.518 5.518 16 C 0.096 3.904 17 C 0.466 3.534 18 S -0.733 6.733 19 C 0.057 3.943 20 H 0.079 0.921 21 C -0.155 4.155 22 C 0.053 3.947 23 O -0.400 6.400 24 C 0.060 3.940 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.292 0.708 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -2.567 4.937 5.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.279 5.279 3 C 0.114 3.886 4 N -0.161 5.161 5 N -0.202 5.202 6 C 0.105 3.895 7 C -0.493 4.493 8 H 0.135 0.865 9 C -0.185 4.185 10 N -0.399 5.399 11 Si 0.823 3.177 12 H -0.187 1.187 13 H -0.197 1.197 14 H -0.170 1.170 15 N -0.219 5.219 16 C -0.046 4.046 17 C 0.095 3.905 18 S -0.610 6.610 19 C -0.051 4.051 20 H 0.097 0.903 21 C -0.193 4.193 22 C -0.023 4.023 23 O -0.319 6.319 24 C -0.017 4.017 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.272 -3.492 5.449 6.478 hybrid contribution -1.110 1.446 -0.110 1.826 sum -1.382 -2.047 5.339 5.883 Atomic orbital electron populations 1.22274 0.86143 1.01953 1.00673 1.61887 1.08867 1.12707 1.44437 1.21825 1.00543 0.85962 0.80252 1.49402 1.15895 1.40563 1.10244 1.79262 1.02276 1.23928 1.14697 1.21680 0.85492 0.93764 0.88577 1.18903 1.03688 1.28260 0.98468 0.86480 1.26840 0.99195 0.97416 0.95050 1.69959 1.26117 1.33847 1.09962 0.84826 0.77038 0.77000 0.78808 1.18704 1.19655 1.17045 1.46255 1.17755 1.44253 1.13640 1.22020 1.02007 1.03375 0.77182 1.22884 0.93280 0.89518 0.84798 1.92622 1.09775 1.66107 1.92461 1.23103 0.96079 0.94528 0.91381 0.90299 1.23375 0.93494 0.98977 1.03493 1.23677 0.92002 0.88527 0.98134 1.88848 1.18840 1.44888 1.79361 1.23230 0.87680 0.88370 1.02400 0.94741 0.93895 0.89792 0.91370 0.86959 0.89766 0.89957 0.89430 0.87571 0.91186 0.88144 0.89592 0.88325 0.89572 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 9.20 127.69 1.17 2.47 16 2 N -0.55 -19.30 4.68 -903.56 -4.23 -23.53 16 3 C 0.33 12.53 5.71 170.81 0.98 13.50 16 4 N -0.38 -17.49 3.34 -359.73 -1.20 -18.69 16 5 N -0.37 -18.61 9.82 -55.17 -0.54 -19.15 16 6 C 0.35 17.23 7.49 133.52 1.00 18.23 16 7 C -0.45 -20.34 8.99 23.16 0.21 -20.14 16 8 H 0.12 4.62 7.08 -2.91 -0.02 4.60 16 9 C 0.04 1.65 5.49 85.29 0.47 2.12 16 10 N -0.77 -36.31 11.93 21.84 0.26 -36.05 16 11 Si 1.00 31.94 29.56 68.60 2.03 33.97 16 12 H -0.26 -8.14 7.11 99.48 0.71 -7.44 16 13 H -0.27 -8.54 7.11 99.48 0.71 -7.83 16 14 H -0.25 -7.39 7.11 99.48 0.71 -6.68 16 15 N -0.52 -23.54 3.17 -548.31 -1.74 -25.28 16 16 C 0.10 3.35 10.66 127.77 1.36 4.72 16 17 C 0.47 22.52 7.84 179.06 1.40 23.92 16 18 S -0.73 -36.51 29.50 -56.49 -1.67 -38.18 16 19 C 0.06 1.53 2.76 45.91 0.13 1.66 16 20 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 21 C -0.16 -4.01 5.47 31.98 0.17 -3.84 16 22 C 0.05 1.19 7.72 72.75 0.56 1.75 16 23 O -0.40 -11.59 11.52 -148.98 -1.72 -13.31 16 24 C 0.06 1.55 6.91 72.36 0.50 2.05 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.04 1.86 6.83 -2.39 -0.02 1.84 16 27 H 0.08 2.47 6.47 -2.38 -0.02 2.46 16 28 H 0.07 2.50 8.12 -2.39 -0.02 2.49 16 29 H 0.11 4.28 5.91 -2.39 -0.01 4.27 16 30 H 0.29 12.34 8.30 -92.71 -0.77 11.57 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.09 3.11 7.62 -2.39 -0.02 3.09 16 33 H 0.11 3.18 7.27 -2.39 -0.02 3.16 16 34 H 0.07 2.40 7.52 -2.39 -0.02 2.38 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 2.21 6.60 -2.39 -0.02 2.19 16 Total: -1.00 -65.23 331.78 0.21 -65.02 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 1.06 Total: 28.77 kcal Atomic # 6 Polarization: 38.48 SS G_CDS: 7.96 Total: 46.43 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -7.45 Total: -122.70 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.72 Total: -13.31 kcal Atomic # 14 Polarization: 31.94 SS G_CDS: 2.03 Total: 33.97 kcal Atomic # 16 Polarization: -36.51 SS G_CDS: -1.67 Total: -38.18 kcal Total: -65.23 0.21 -65.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.201 kcal (2) G-P(sol) polarization free energy of solvation -65.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds