Wall clock time and date at job start Tue Mar 31 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48504 * 109.47192 * 240.00290 * 3 2 1 5 5 H 1.48507 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47544 * 120.00235 * 3 2 1 7 7 C 1.37881 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99828 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99918 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00193 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00052 * 180.02562 * 11 10 9 14 14 N 1.46909 * 109.46912 * 180.10681 * 13 11 10 15 15 C 1.47018 * 110.99835 * 299.58274 * 14 13 11 16 16 C 1.53100 * 109.25256 * 182.39377 * 15 14 13 17 17 O 1.43015 * 109.25806 * 303.14747 * 16 15 14 18 18 C 1.43024 * 113.73687 * 58.67729 * 17 16 15 19 19 C 1.47010 * 110.99824 * 63.21843 * 14 13 11 20 20 H 1.09001 * 109.50900 * 297.58709 * 19 14 13 21 21 C 1.53001 * 109.50883 * 57.67093 * 19 14 13 22 22 H 1.08994 * 110.27438 * 295.96084 * 21 19 14 23 23 C 1.54953 * 110.30705 * 58.05236 * 21 19 14 24 24 C 1.55413 * 100.88951 * 155.28807 * 23 21 19 25 25 C 1.54373 * 102.31139 * 325.98758 * 24 23 21 26 26 O 1.43239 * 107.58922 * 21.28738 * 25 24 23 27 27 H 0.97000 * 120.00393 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46815 * 60.00370 * 9 7 2 29 29 H 1.08995 * 109.47534 * 300.00870 * 9 7 2 30 30 H 0.96998 * 120.00056 * 0.02562 * 10 9 7 31 31 H 1.08996 * 109.47133 * 60.11009 * 13 11 10 32 32 H 1.08997 * 109.47685 * 300.10543 * 13 11 10 33 33 H 1.09001 * 109.50761 * 302.32240 * 15 14 13 34 34 H 1.08993 * 109.50756 * 62.46141 * 15 14 13 35 35 H 1.09000 * 109.51112 * 63.08724 * 16 15 14 36 36 H 1.09000 * 109.50675 * 183.21836 * 16 15 14 37 37 H 1.08998 * 109.50630 * 181.39365 * 18 17 16 38 38 H 1.08996 * 109.50762 * 61.26115 * 18 17 16 39 39 H 1.08997 * 111.12073 * 273.27759 * 23 21 19 40 40 H 1.08994 * 111.12376 * 37.43737 * 23 21 19 41 41 H 1.08998 * 110.87974 * 207.74830 * 24 23 21 42 42 H 1.09002 * 110.93528 * 84.25326 * 24 23 21 43 43 H 1.08994 * 109.83352 * 261.76966 * 25 24 23 44 44 H 1.09008 * 109.83004 * 140.79914 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0025 12 8 0.5615 -5.1050 -0.0026 13 6 2.7332 -6.0287 -0.0032 14 7 1.9987 -7.3010 -0.0065 15 6 1.1468 -7.4206 1.1857 16 6 0.4475 -8.7824 1.1719 17 8 -0.2973 -8.9180 -0.0415 18 6 0.5015 -8.8074 -1.2227 19 6 1.2014 -7.4458 -1.2332 20 1 0.4552 -6.6525 -1.2781 21 6 2.1198 -7.3528 -2.4534 22 1 2.5731 -6.3632 -2.5104 23 6 3.2176 -8.4442 -2.3846 24 6 3.5691 -8.6023 -3.8902 25 6 2.2059 -8.3618 -4.5735 26 8 1.3833 -7.6338 -3.6542 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8895 30 1 3.1567 -3.4354 -0.0021 31 1 3.3586 -5.9726 0.8878 32 1 3.3611 -5.9694 -0.8921 33 1 1.7612 -7.3360 2.0821 34 1 0.3992 -6.6275 1.1799 35 1 1.1931 -9.5752 1.2318 36 1 -0.2289 -8.8529 2.0238 37 1 -0.1356 -8.8958 -2.1026 38 1 1.2488 -9.6008 -1.2324 39 1 4.0790 -8.0993 -1.8126 40 1 2.8225 -9.3735 -1.9744 41 1 3.9364 -9.6069 -4.0999 42 1 4.2966 -7.8525 -4.2011 43 1 1.7381 -9.3170 -4.8118 44 1 2.3464 -7.7801 -5.4846 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796345089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:04 Heat of formation + Delta-G solvation = -140.809466 kcal Electronic energy + Delta-G solvation = -25761.099836 eV Core-core repulsion = 22098.644478 eV Total energy + Delta-G solvation = -3662.455358 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.88754 -40.32041 -39.40623 -36.76078 -35.93878 -34.41438 -33.29831 -32.72136 -30.89090 -29.32106 -28.62700 -26.04909 -25.36355 -24.26455 -22.89969 -22.51564 -21.59143 -20.69640 -18.94982 -18.33968 -17.72463 -17.57501 -16.96278 -16.76409 -16.60906 -16.33533 -16.18751 -16.03393 -15.73209 -15.52586 -15.10205 -14.63293 -14.44636 -14.19018 -14.09417 -13.78379 -13.28296 -13.11770 -12.95213 -12.72660 -12.69016 -12.62406 -12.27185 -12.19452 -12.14238 -11.78346 -11.59325 -11.53603 -11.46785 -11.39035 -10.81217 -10.70902 -10.33528 -9.84176 -9.27784 -8.31895 -6.49701 1.40742 1.45029 1.53373 1.67325 2.29984 2.42662 2.57829 2.86984 3.02723 3.16876 3.60212 3.65293 3.85402 3.95123 3.98334 4.05496 4.10769 4.22830 4.32026 4.35257 4.43475 4.50059 4.53681 4.56583 4.70227 4.84556 4.90249 4.92138 4.98640 5.03448 5.04734 5.13998 5.17007 5.18571 5.34131 5.46109 5.64565 5.69760 5.77670 5.81861 6.11981 6.19890 6.61633 6.85294 7.20316 7.46041 8.79946 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.003892 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.876635 B = 7192.661700 C = 8059.790214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.269 3.731 10 N -0.705 5.705 11 C 0.459 3.541 12 O -0.592 6.592 13 C 0.035 3.965 14 N -0.480 5.480 15 C -0.005 4.005 16 C 0.067 3.933 17 O -0.410 6.410 18 C 0.082 3.918 19 C 0.036 3.964 20 H 0.036 0.964 21 C 0.087 3.913 22 H 0.056 0.944 23 C -0.129 4.129 24 C -0.150 4.150 25 C 0.039 3.961 26 O -0.409 6.409 27 H 0.268 0.732 28 H -0.021 1.021 29 H -0.016 1.016 30 H 0.409 0.591 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.755 -20.535 -3.098 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.146 3.854 10 N -0.356 5.356 11 C 0.246 3.754 12 O -0.474 6.474 13 C -0.096 4.096 14 N -0.204 5.204 15 C -0.133 4.133 16 C -0.010 4.010 17 O -0.329 6.329 18 C 0.005 3.995 19 C -0.073 4.073 20 H 0.055 0.945 21 C 0.029 3.971 22 H 0.074 0.926 23 C -0.167 4.167 24 C -0.187 4.187 25 C -0.037 4.037 26 O -0.328 6.328 27 H 0.077 0.923 28 H -0.003 1.003 29 H 0.002 0.998 30 H 0.245 0.755 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.696 -20.948 -3.143 24.198 hybrid contribution -0.358 2.219 -0.082 2.249 sum 11.338 -18.730 -3.225 22.130 Atomic orbital electron populations 1.70143 1.08425 1.28655 1.49913 1.26107 0.95739 1.04067 0.93755 0.85194 0.77900 0.76445 0.79606 1.18598 1.21190 1.18403 1.21599 0.94339 0.90529 1.53022 0.89622 1.18458 0.88730 0.84717 0.93545 1.46341 1.11139 1.05780 1.72293 1.22884 0.90782 0.85885 0.75860 1.90613 1.19643 1.84880 1.52277 1.22598 0.95226 0.84055 1.07705 1.62763 1.26920 1.29139 1.01570 1.23123 0.97321 0.99183 0.93680 1.22789 0.95960 0.95318 0.86887 1.87961 1.36723 1.93074 1.15163 1.22631 0.94670 0.94659 0.87527 1.22367 0.95444 0.99375 0.90129 0.94547 1.22861 0.91626 0.99021 0.83562 0.92607 1.23225 0.98095 0.98456 0.96876 1.23174 0.96571 1.04571 0.94407 1.23368 0.91369 0.96477 0.92482 1.88412 1.40256 1.76382 1.27791 0.92274 1.00281 0.99826 0.75517 0.84170 0.85463 0.87596 0.94164 0.90180 0.87584 0.89262 0.90096 0.87933 0.89386 0.87671 0.89960 0.90164 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.99 42.42 29.54 68.60 2.03 44.44 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.56 -30.46 9.28 25.60 0.24 -30.22 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 14.97 5.43 85.63 0.46 15.43 16 10 N -0.71 -29.38 5.55 -466.80 -2.59 -31.97 16 11 C 0.46 17.88 7.22 87.66 0.63 18.51 16 12 O -0.59 -29.11 11.56 -3.05 -0.04 -29.15 16 13 C 0.04 0.88 5.52 85.56 0.47 1.36 16 14 N -0.48 -12.29 4.32 -874.52 -3.78 -16.07 16 15 C -0.01 -0.14 5.27 86.31 0.45 0.31 16 16 C 0.07 1.60 7.01 72.02 0.50 2.11 16 17 O -0.41 -12.59 10.83 -148.98 -1.61 -14.21 16 18 C 0.08 2.23 5.87 72.02 0.42 2.66 16 19 C 0.04 1.09 1.74 44.93 0.08 1.16 16 20 H 0.04 1.55 5.69 -2.39 -0.01 1.54 16 21 C 0.09 2.21 2.70 31.26 0.08 2.30 16 22 H 0.06 1.55 6.58 -2.39 -0.02 1.53 16 23 C -0.13 -2.08 6.08 32.09 0.20 -1.88 16 24 C -0.15 -1.97 7.02 31.89 0.22 -1.75 16 25 C 0.04 0.72 7.80 72.45 0.56 1.29 16 26 O -0.41 -11.51 10.25 -148.98 -1.53 -13.04 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 29 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H 0.41 13.71 8.32 -92.71 -0.77 12.94 16 31 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.13 2.59 6.19 -2.39 -0.01 2.57 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.04 1.54 5.45 -2.39 -0.01 1.52 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.09 2.56 7.70 -2.39 -0.02 2.55 16 38 H 0.08 1.74 6.09 -2.39 -0.01 1.72 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.35 5.94 -2.39 -0.01 1.33 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -77.87 340.47 -2.20 -80.07 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.24 Total: 24.98 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 4.80 Total: 11.90 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -6.08 Total: -105.00 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -3.18 Total: -56.39 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -77.87 -2.20 -80.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796345089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.742 kcal (2) G-P(sol) polarization free energy of solvation -77.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds