Wall clock time and date at job start Tue Mar 31 2020 04:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46819 * 239.99499 * 3 2 1 5 5 H 1.48496 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47148 * 119.99349 * 3 2 1 7 7 C 1.38816 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99672 * 197.35916 * 7 2 1 9 9 N 1.36932 * 120.00003 * 17.35680 * 7 2 1 10 10 C 1.46921 * 120.63406 * 27.67888 * 9 7 2 11 11 C 1.53188 * 108.77802 * 126.40989 * 10 9 7 12 12 C 1.53034 * 109.31441 * 54.63648 * 11 10 9 13 13 N 1.46499 * 109.46285 * 178.61220 * 12 11 10 14 14 C 1.34780 * 120.00455 * 204.99747 * 13 12 11 15 15 O 1.21514 * 119.99623 * 0.02562 * 14 13 12 16 16 O 1.34631 * 120.00174 * 180.02562 * 14 13 12 17 17 C 1.45199 * 116.99942 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47065 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.82490 * 305.69360 * 18 17 16 20 20 C 1.54386 * 109.83001 * 184.81222 * 18 17 16 21 21 C 1.55451 * 102.18398 * 219.17852 * 20 18 17 22 22 C 1.54942 * 100.99042 * 34.04058 * 21 20 18 23 23 O 1.43239 * 109.83568 * 66.58312 * 18 17 16 24 24 C 1.53045 * 109.53982 * 298.63411 * 12 11 10 25 25 C 1.46926 * 120.63117 * 207.69768 * 9 7 2 26 26 H 0.97002 * 119.99650 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58408 * 6.62197 * 10 9 7 28 28 H 1.09000 * 109.70362 * 246.26942 * 10 9 7 29 29 H 1.09003 * 109.49775 * 294.68156 * 11 10 9 30 30 H 1.09008 * 109.52488 * 174.60757 * 11 10 9 31 31 H 1.08998 * 109.46269 * 58.65691 * 12 11 10 32 32 H 0.97004 * 119.99766 * 25.00393 * 13 12 11 33 33 H 1.09002 * 109.47056 * 299.99511 * 17 16 14 34 34 H 1.08991 * 109.47254 * 59.99851 * 17 16 14 35 35 H 1.08992 * 110.84618 * 337.31780 * 20 18 17 36 36 H 1.09000 * 110.84587 * 100.93707 * 20 18 17 37 37 H 1.09000 * 111.06389 * 276.12207 * 21 20 18 38 38 H 1.08998 * 111.14626 * 151.99304 * 21 20 18 39 39 H 1.09001 * 110.31239 * 204.68883 * 22 21 20 40 40 H 1.08999 * 110.39871 * 82.56449 * 22 21 20 41 41 H 1.08998 * 109.49932 * 181.31012 * 24 12 11 42 42 H 1.08995 * 109.49407 * 301.41607 * 24 12 11 43 43 H 1.09002 * 109.58618 * 353.37345 * 25 9 7 44 44 H 1.09001 * 109.58844 * 113.65770 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3723 -2.3612 -0.3527 10 6 0.2278 -2.3351 -1.2736 11 6 0.5006 -3.3057 -2.4269 12 6 0.8184 -4.6906 -1.8585 13 7 1.0473 -5.6294 -2.9596 14 6 0.8469 -6.9491 -2.7729 15 8 0.4758 -7.3601 -1.6913 16 8 1.0578 -7.8118 -3.7847 17 6 0.8213 -9.2182 -3.5119 18 6 1.1122 -10.0378 -4.7707 19 1 0.5332 -9.6477 -5.6078 20 6 0.7485 -11.5183 -4.5273 21 6 1.9006 -12.2636 -5.2579 22 6 3.0834 -11.2938 -5.0104 23 8 2.5101 -9.9783 -5.0771 24 6 2.0741 -4.6106 -0.9873 25 6 1.8190 -3.6546 0.1823 26 1 -0.4850 0.8401 -0.0004 27 1 0.0986 -1.3269 -1.6673 28 1 -0.6758 -2.6397 -0.7456 29 1 1.3493 -2.9483 -3.0102 30 1 -0.3799 -3.3682 -3.0665 31 1 -0.0207 -5.0368 -1.2551 32 1 1.3433 -5.3012 -3.8232 33 1 1.4766 -9.5470 -2.7053 34 1 -0.2181 -9.3613 -3.2169 35 1 0.7520 -11.7485 -3.4620 36 1 -0.2161 -11.7593 -4.9742 37 1 1.6899 -12.3625 -6.3228 38 1 2.0891 -13.2367 -4.8046 39 1 3.8411 -11.4159 -5.7844 40 1 3.5177 -11.4677 -4.0260 41 1 2.3132 -5.6016 -0.6017 42 1 2.9079 -4.2409 -1.5841 43 1 2.7398 -3.5172 0.7492 44 1 1.0477 -4.0672 0.8326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804987624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:15 Heat of formation + Delta-G solvation = -133.949338 kcal Electronic energy + Delta-G solvation = -24402.734776 eV Core-core repulsion = 20740.576895 eV Total energy + Delta-G solvation = -3662.157881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66656 -40.43668 -39.40879 -37.49398 -36.07361 -34.00537 -33.22310 -32.09361 -31.67794 -31.04978 -27.31828 -26.53273 -24.17939 -23.83814 -22.79801 -22.17993 -22.03610 -21.17672 -19.69997 -18.62022 -18.28812 -17.97778 -17.17400 -16.89687 -16.87320 -16.28987 -15.72335 -15.44249 -15.35738 -15.03300 -14.80242 -14.62057 -14.35010 -14.11856 -13.75238 -13.42756 -13.23134 -13.01631 -12.70210 -12.61042 -12.55609 -12.52566 -12.28841 -12.19532 -12.04760 -11.88603 -11.78294 -11.73252 -11.68140 -11.56712 -11.33488 -10.57613 -10.54785 -10.17682 -8.72013 -7.87604 -5.32559 1.09093 1.49865 1.51807 1.58806 1.71409 2.52827 2.80583 3.09679 3.29102 3.49277 3.64989 3.77078 3.84718 3.91697 3.99133 4.04137 4.14649 4.28256 4.30499 4.37214 4.43818 4.52955 4.62223 4.73050 4.80150 4.81493 4.86958 4.92024 4.96348 5.01554 5.02472 5.12480 5.22208 5.24519 5.31674 5.42302 5.47869 5.64876 5.71165 6.03559 6.38248 6.40995 7.14651 7.28408 7.83903 8.36573 9.19596 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.044516 B = 0.002479 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.832856 B =11290.149861 C =11410.930928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.265 4.265 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.129 4.129 12 C 0.178 3.822 13 N -0.690 5.690 14 C 0.645 3.355 15 O -0.608 6.608 16 O -0.366 6.366 17 C 0.071 3.929 18 C 0.081 3.919 19 H 0.097 0.903 20 C -0.143 4.143 21 C -0.146 4.146 22 C 0.034 3.966 23 O -0.401 6.401 24 C -0.128 4.128 25 C 0.146 3.854 26 H 0.251 0.749 27 H 0.066 0.934 28 H -0.001 1.001 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.417 0.583 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.296 -23.860 -13.441 27.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.169 4.169 12 C 0.075 3.925 13 N -0.349 5.349 14 C 0.398 3.602 15 O -0.500 6.500 16 O -0.279 6.279 17 C -0.004 4.004 18 C 0.023 3.977 19 H 0.115 0.885 20 C -0.181 4.181 21 C -0.184 4.184 22 C -0.042 4.042 23 O -0.320 6.320 24 C -0.168 4.168 25 C 0.020 3.980 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.017 0.983 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.253 0.747 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 2.129 -23.820 -12.975 27.208 hybrid contribution 0.200 1.032 0.260 1.083 sum 2.328 -22.788 -12.715 26.199 Atomic orbital electron populations 1.70173 1.06632 1.26064 1.55174 1.25804 0.96061 1.01507 1.01102 0.85319 0.77539 0.79094 0.78342 1.20233 1.22036 1.20310 1.19479 0.93044 0.85885 1.41058 0.91475 1.44357 1.35931 1.02087 1.50911 1.20583 0.87838 0.97824 0.88544 1.22302 1.02287 0.93029 0.99239 1.20768 0.97641 0.87587 0.86474 1.44880 1.70629 1.02351 1.16990 1.18311 0.76654 0.83064 0.82136 1.90962 1.53519 1.78594 1.26890 1.86284 1.82521 1.19739 1.39381 1.23710 1.02349 0.75038 0.99265 1.22961 0.83396 0.96028 0.95302 0.88541 1.23174 1.01444 0.90467 1.02981 1.23297 0.93074 0.99650 1.02341 1.23665 0.97125 0.81382 1.02018 1.88527 1.22257 1.30337 1.90926 1.22242 0.97688 0.98950 0.97910 1.20952 0.97610 0.85776 0.93674 0.93959 0.91539 0.98276 0.90981 0.90102 0.91534 0.74651 0.91760 0.89266 0.89535 0.87192 0.89242 0.87696 0.88601 0.92140 0.92151 0.91425 0.92212 0.97041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 11.19 21.65 0.24 -54.68 16 2 C -0.05 -2.74 4.91 84.86 0.42 -2.32 16 3 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.26 -14.54 9.59 84.04 0.81 -13.74 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 9 N -0.61 -30.81 2.99 -699.10 -2.09 -32.91 16 10 C 0.18 8.49 5.31 86.36 0.46 8.95 16 11 C -0.13 -4.63 5.55 30.67 0.17 -4.46 16 12 C 0.18 6.24 2.42 45.02 0.11 6.35 16 13 N -0.69 -20.51 5.08 -570.00 -2.90 -23.40 16 14 C 0.65 20.91 8.71 129.79 1.13 22.05 16 15 O -0.61 -23.45 15.80 19.80 0.31 -23.14 16 16 O -0.37 -10.23 10.26 -53.40 -0.55 -10.78 16 17 C 0.07 1.57 5.00 71.98 0.36 1.93 16 18 C 0.08 1.35 3.81 31.07 0.12 1.47 16 19 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 20 C -0.14 -1.34 6.56 31.91 0.21 -1.13 16 21 C -0.15 -1.13 7.16 32.10 0.23 -0.90 16 22 C 0.03 0.45 7.78 72.65 0.57 1.01 16 23 O -0.40 -8.44 11.01 -147.67 -1.63 -10.07 16 24 C -0.13 -4.68 5.65 30.68 0.17 -4.51 16 25 C 0.15 6.35 6.52 86.36 0.56 6.91 16 26 H 0.25 14.31 8.31 -92.71 -0.77 13.53 16 27 H 0.07 3.53 6.04 -2.39 -0.01 3.52 16 28 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.07 2.62 7.58 -2.39 -0.02 2.60 16 32 H 0.42 10.16 8.71 -92.71 -0.81 9.35 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 0.77 7.85 -2.39 -0.02 0.75 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -69.97 354.47 0.91 -69.07 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.18 Total: 17.71 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: 5.31 Total: 21.62 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.75 Total: -110.99 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -1.86 Total: -43.99 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.97 0.91 -69.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804987624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.883 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds