Wall clock time and date at job start Tue Mar 31 2020 04:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00099 * 2 1 4 4 H 1.48499 * 109.47206 * 270.00122 * 3 2 1 5 5 H 1.48508 * 109.46695 * 29.99760 * 3 2 1 6 6 H 1.48499 * 109.47222 * 149.99505 * 3 2 1 7 7 C 1.37872 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99797 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47017 * 299.99173 * 9 7 2 11 11 O 1.42890 * 109.47548 * 59.99805 * 9 7 2 12 12 C 1.53009 * 109.47119 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.46904 * 177.17645 * 12 9 7 14 14 C 1.46956 * 110.96572 * 159.69973 * 13 12 9 15 15 C 1.53239 * 109.31111 * 187.05950 * 14 13 12 16 16 N 1.47079 * 108.68431 * 306.47132 * 15 14 13 17 17 C 1.34773 * 120.88351 * 231.06949 * 16 15 14 18 18 O 1.21285 * 119.99885 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00207 * 179.97438 * 17 16 15 20 20 H 1.08999 * 110.33069 * 55.69915 * 19 17 16 21 21 C 1.54475 * 110.36888 * 293.44530 * 19 17 16 22 22 C 1.54511 * 104.06136 * 217.18592 * 21 19 17 23 23 C 1.54483 * 104.06287 * 0.02562 * 22 21 19 24 24 O 1.44422 * 110.36941 * 177.94629 * 19 17 16 25 25 C 1.47081 * 118.23534 * 51.08275 * 16 15 14 26 26 C 1.46895 * 110.99833 * 284.20003 * 13 12 9 27 27 H 0.97002 * 120.00227 * 359.97438 * 1 2 3 28 28 H 0.96702 * 114.00018 * 59.99775 * 11 9 7 29 29 H 1.09002 * 109.46963 * 57.17181 * 12 9 7 30 30 H 1.09002 * 109.46897 * 297.17449 * 12 9 7 31 31 H 1.09003 * 109.34039 * 67.21016 * 14 13 12 32 32 H 1.09001 * 109.67541 * 307.11136 * 14 13 12 33 33 H 1.09003 * 109.62770 * 186.66444 * 15 14 13 34 34 H 1.08995 * 109.62460 * 66.27699 * 15 14 13 35 35 H 1.08995 * 110.51521 * 335.83135 * 21 19 17 36 36 H 1.09008 * 110.50971 * 98.40886 * 21 19 17 37 37 H 1.09004 * 110.50714 * 118.64447 * 22 21 19 38 38 H 1.08993 * 110.51642 * 241.35383 * 22 21 19 39 39 H 1.08994 * 110.37209 * 142.80746 * 23 22 21 40 40 H 1.08999 * 110.36867 * 265.03483 * 23 22 21 41 41 H 1.08999 * 109.62550 * 68.53151 * 25 16 15 42 42 H 1.09002 * 109.62831 * 188.91452 * 25 16 15 43 43 H 1.09005 * 109.49175 * 52.79423 * 26 13 12 44 44 H 1.09002 * 109.52166 * 292.72789 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1664 12 6 2.2453 -3.6621 0.0005 13 7 1.5120 -4.9332 0.0688 14 6 2.3459 -6.0473 -0.4035 15 6 1.4945 -7.3189 -0.4837 16 7 0.8430 -7.5326 0.8175 17 6 0.9238 -8.7230 1.4444 18 8 1.5395 -9.6357 0.9356 19 6 0.2490 -8.9199 2.7774 20 1 -0.8117 -8.6801 2.7041 21 6 0.9248 -8.0452 3.8565 22 6 0.8970 -8.9263 5.1255 23 6 0.2083 -10.2294 4.6627 24 8 0.4270 -10.2781 3.2351 25 6 0.1008 -6.4129 1.4163 26 6 1.0078 -5.1778 1.4266 27 1 -0.4850 0.8400 0.0004 28 1 0.9223 -2.5299 -1.9975 29 1 2.9048 -3.5762 0.8641 30 1 2.8381 -3.6332 -0.9137 31 1 3.1684 -6.2036 0.2945 32 1 2.7452 -5.8141 -1.3905 33 1 2.1314 -8.1717 -0.7187 34 1 0.7364 -7.2036 -1.2582 35 1 1.9520 -7.8153 3.5737 36 1 0.3584 -7.1273 4.0140 37 1 1.9106 -9.1320 5.4699 38 1 0.3157 -8.4452 5.9120 39 1 0.6648 -11.0925 5.1470 40 1 -0.8589 -10.1928 4.8815 41 1 -0.7914 -6.2071 0.8250 42 1 -0.1867 -6.6680 2.4363 43 1 0.4389 -4.3116 1.7649 44 1 1.8466 -5.3480 2.1015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809571752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:30 Heat of formation + Delta-G solvation = -112.146556 kcal Electronic energy + Delta-G solvation = -25261.792457 eV Core-core repulsion = 21600.580016 eV Total energy + Delta-G solvation = -3661.212441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71433 -39.01649 -37.73401 -35.77185 -34.04452 -32.46659 -32.10949 -31.38219 -29.84765 -28.90562 -26.68834 -24.46925 -23.79688 -23.33350 -21.81449 -21.25292 -20.32838 -19.00097 -17.72713 -16.97054 -16.66486 -16.33415 -15.41245 -15.13394 -15.09722 -14.94075 -14.72960 -14.53902 -14.20770 -14.05999 -13.78179 -13.52160 -13.35766 -12.91027 -12.50996 -12.25483 -12.10757 -11.91630 -11.64943 -11.41784 -11.22704 -11.18638 -11.16141 -10.96517 -10.95267 -10.72543 -10.53088 -10.26402 -10.06069 -9.64906 -9.14154 -8.71597 -8.61303 -8.17446 -7.70837 -6.04434 -4.23116 2.49393 2.67234 3.24381 3.31824 3.33814 3.71620 4.10677 4.19254 4.31023 4.40000 4.50692 4.67210 4.81735 4.86345 5.02485 5.07498 5.18425 5.23071 5.26212 5.30935 5.35666 5.45118 5.45810 5.56199 5.60846 5.67174 5.79006 5.90889 5.97045 6.00656 6.11199 6.22681 6.34398 6.49597 6.52891 6.74276 7.27884 7.39001 7.49171 7.72296 7.83391 8.08973 8.15875 8.80899 9.42586 9.58755 10.99477 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.003241 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.518783 B = 8637.953739 C = 9200.083626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.576 4.576 8 H 0.054 0.946 9 C 0.241 3.759 10 H 0.053 0.947 11 O -0.554 6.554 12 C 0.031 3.969 13 N -0.526 5.526 14 C 0.042 3.958 15 C 0.119 3.881 16 N -0.606 5.606 17 C 0.520 3.480 18 O -0.529 6.529 19 C 0.059 3.941 20 H 0.095 0.905 21 C -0.147 4.147 22 C -0.153 4.153 23 C 0.041 3.959 24 O -0.346 6.346 25 C 0.104 3.896 26 C 0.044 3.956 27 H 0.260 0.740 28 H 0.342 0.658 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -15.370 8.165 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.615 4.615 8 H 0.072 0.928 9 C 0.183 3.817 10 H 0.071 0.929 11 O -0.356 6.356 12 C -0.096 4.096 13 N -0.251 5.251 14 C -0.087 4.087 15 C -0.003 4.003 16 N -0.342 5.342 17 C 0.307 3.693 18 O -0.404 6.404 19 C -0.003 4.003 20 H 0.113 0.887 21 C -0.185 4.185 22 C -0.191 4.191 23 C -0.036 4.036 24 O -0.264 6.264 25 C -0.019 4.019 26 C -0.085 4.085 27 H 0.070 0.930 28 H 0.185 0.815 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.714 -15.974 7.920 17.844 hybrid contribution 1.636 1.309 0.370 2.128 sum 0.922 -14.665 8.290 16.871 Atomic orbital electron populations 1.70073 1.05886 1.26428 1.46930 1.25008 0.94678 0.99044 0.93822 0.86693 0.79941 0.83585 0.78252 1.20504 1.21110 1.19915 1.21657 0.93130 0.91665 1.55017 0.92808 1.19268 0.87724 0.88286 0.86465 0.92898 1.86563 1.37772 1.96279 1.14958 1.23138 0.97085 0.89547 0.99833 1.61935 1.38516 1.02183 1.22419 1.22490 0.94142 0.91168 1.00915 1.21733 0.96951 0.97617 0.84017 1.48108 1.53069 1.11402 1.21587 1.20163 0.80913 0.82286 0.85948 1.90700 1.42159 1.40905 1.66670 1.22851 0.99885 0.84576 0.92952 0.88713 1.23031 1.02635 0.98908 0.93883 1.22948 1.02428 0.95862 0.97869 1.23510 0.99893 0.98579 0.81601 1.89288 1.91998 1.24215 1.20885 1.22115 0.95520 0.85506 0.98749 1.22436 0.97990 0.97788 0.90280 0.92975 0.81511 0.95236 0.91838 0.95299 0.89623 0.89141 0.90435 0.90112 0.88975 0.90323 0.89905 0.88658 0.91872 0.89863 0.89628 0.88590 0.95165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.63 12.84 55.43 0.71 -23.91 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.58 -15.22 8.76 -34.44 -0.30 -15.52 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.24 5.76 2.90 -27.88 -0.08 5.68 16 10 H 0.05 1.38 6.74 -51.93 -0.35 1.03 16 11 O -0.55 -13.81 12.64 -35.23 -0.45 -14.25 16 12 C 0.03 0.60 4.59 -3.82 -0.02 0.58 16 13 N -0.53 -8.71 4.46 -234.27 -1.05 -9.76 16 14 C 0.04 0.60 5.60 -3.67 -0.02 0.58 16 15 C 0.12 1.61 6.59 -3.60 -0.02 1.59 16 16 N -0.61 -8.09 3.01 -172.46 -0.52 -8.61 16 17 C 0.52 7.52 7.01 -10.99 -0.08 7.44 16 18 O -0.53 -9.69 16.01 -13.66 -0.22 -9.91 16 19 C 0.06 0.66 2.76 -27.11 -0.07 0.59 16 20 H 0.10 0.88 7.81 -51.93 -0.41 0.47 16 21 C -0.15 -1.31 5.61 -25.16 -0.14 -1.45 16 22 C -0.15 -1.12 7.09 -25.16 -0.18 -1.30 16 23 C 0.04 0.34 7.63 37.94 0.29 0.63 16 24 O -0.35 -4.48 10.92 -54.44 -0.59 -5.07 16 25 C 0.10 1.24 6.20 -3.60 -0.02 1.22 16 26 C 0.04 0.64 5.45 -3.70 -0.02 0.62 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.34 7.67 9.04 45.56 0.41 8.08 16 29 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 30 H 0.06 1.19 7.77 -51.93 -0.40 0.79 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 33 H 0.09 1.25 7.06 -51.93 -0.37 0.88 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.83 7.86 -51.93 -0.41 0.43 16 36 H 0.09 0.66 6.59 -51.92 -0.34 0.32 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 0.78 4.08 -51.93 -0.21 0.57 16 43 H 0.10 1.53 6.65 -51.93 -0.35 1.18 16 44 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -33.16 347.05 -8.84 -42.00 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.17 Total: 5.95 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.77 Total: 2.76 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.85 Total: -42.28 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -1.26 Total: -29.24 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.16 -8.84 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.147 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds