Wall clock time and date at job start Tue Mar 31 2020 04:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00099 * 2 1 4 4 H 1.48499 * 109.47206 * 270.00122 * 3 2 1 5 5 H 1.48508 * 109.46695 * 29.99760 * 3 2 1 6 6 H 1.48499 * 109.47222 * 149.99505 * 3 2 1 7 7 C 1.37872 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99797 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47017 * 299.99173 * 9 7 2 11 11 O 1.42890 * 109.47548 * 59.99805 * 9 7 2 12 12 C 1.53009 * 109.47119 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.46904 * 177.17645 * 12 9 7 14 14 C 1.46956 * 110.96572 * 159.69973 * 13 12 9 15 15 C 1.53239 * 109.31111 * 187.05950 * 14 13 12 16 16 N 1.47079 * 108.68431 * 306.47132 * 15 14 13 17 17 C 1.34773 * 120.88351 * 231.06949 * 16 15 14 18 18 O 1.21285 * 119.99885 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00207 * 179.97438 * 17 16 15 20 20 H 1.08999 * 110.33069 * 55.69915 * 19 17 16 21 21 C 1.54475 * 110.36888 * 293.44530 * 19 17 16 22 22 C 1.54511 * 104.06136 * 217.18592 * 21 19 17 23 23 C 1.54483 * 104.06287 * 0.02562 * 22 21 19 24 24 O 1.44422 * 110.36941 * 177.94629 * 19 17 16 25 25 C 1.47081 * 118.23534 * 51.08275 * 16 15 14 26 26 C 1.46895 * 110.99833 * 284.20003 * 13 12 9 27 27 H 0.97002 * 120.00227 * 359.97438 * 1 2 3 28 28 H 0.96702 * 114.00018 * 59.99775 * 11 9 7 29 29 H 1.09002 * 109.46963 * 57.17181 * 12 9 7 30 30 H 1.09002 * 109.46897 * 297.17449 * 12 9 7 31 31 H 1.09003 * 109.34039 * 67.21016 * 14 13 12 32 32 H 1.09001 * 109.67541 * 307.11136 * 14 13 12 33 33 H 1.09003 * 109.62770 * 186.66444 * 15 14 13 34 34 H 1.08995 * 109.62460 * 66.27699 * 15 14 13 35 35 H 1.08995 * 110.51521 * 335.83135 * 21 19 17 36 36 H 1.09008 * 110.50971 * 98.40886 * 21 19 17 37 37 H 1.09004 * 110.50714 * 118.64447 * 22 21 19 38 38 H 1.08993 * 110.51642 * 241.35383 * 22 21 19 39 39 H 1.08994 * 110.37209 * 142.80746 * 23 22 21 40 40 H 1.08999 * 110.36867 * 265.03483 * 23 22 21 41 41 H 1.08999 * 109.62550 * 68.53151 * 25 16 15 42 42 H 1.09002 * 109.62831 * 188.91452 * 25 16 15 43 43 H 1.09005 * 109.49175 * 52.79423 * 26 13 12 44 44 H 1.09002 * 109.52166 * 292.72789 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1664 12 6 2.2453 -3.6621 0.0005 13 7 1.5120 -4.9332 0.0688 14 6 2.3459 -6.0473 -0.4035 15 6 1.4945 -7.3189 -0.4837 16 7 0.8430 -7.5326 0.8175 17 6 0.9238 -8.7230 1.4444 18 8 1.5395 -9.6357 0.9356 19 6 0.2490 -8.9199 2.7774 20 1 -0.8117 -8.6801 2.7041 21 6 0.9248 -8.0452 3.8565 22 6 0.8970 -8.9263 5.1255 23 6 0.2083 -10.2294 4.6627 24 8 0.4270 -10.2781 3.2351 25 6 0.1008 -6.4129 1.4163 26 6 1.0078 -5.1778 1.4266 27 1 -0.4850 0.8400 0.0004 28 1 0.9223 -2.5299 -1.9975 29 1 2.9048 -3.5762 0.8641 30 1 2.8381 -3.6332 -0.9137 31 1 3.1684 -6.2036 0.2945 32 1 2.7452 -5.8141 -1.3905 33 1 2.1314 -8.1717 -0.7187 34 1 0.7364 -7.2036 -1.2582 35 1 1.9520 -7.8153 3.5737 36 1 0.3584 -7.1273 4.0140 37 1 1.9106 -9.1320 5.4699 38 1 0.3157 -8.4452 5.9120 39 1 0.6648 -11.0925 5.1470 40 1 -0.8589 -10.1928 4.8815 41 1 -0.7914 -6.2071 0.8250 42 1 -0.1867 -6.6680 2.4363 43 1 0.4389 -4.3116 1.7649 44 1 1.8466 -5.3480 2.1015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809571752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:30 Heat of formation + Delta-G solvation = -137.597028 kcal Electronic energy + Delta-G solvation = -25262.896073 eV Core-core repulsion = 21600.580016 eV Total energy + Delta-G solvation = -3662.316057 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.72305 -40.00570 -38.98652 -37.44327 -35.43538 -34.17089 -33.29513 -32.38534 -30.94327 -30.28405 -28.20484 -25.90781 -24.95226 -24.42292 -22.60934 -22.38369 -21.91228 -20.09707 -19.05705 -18.54895 -17.60887 -17.25993 -16.64346 -16.54354 -16.32841 -16.30986 -16.11472 -15.78823 -15.50719 -15.30352 -15.01788 -14.74670 -14.60335 -14.21863 -13.93883 -13.41591 -13.11654 -12.95509 -12.84361 -12.80630 -12.74538 -12.56633 -12.34883 -12.26734 -12.20728 -12.07110 -11.85076 -11.62896 -11.08780 -10.99468 -10.67965 -10.66945 -10.16007 -9.80566 -9.10318 -8.10213 -6.35456 1.40736 1.42127 1.43386 1.53047 1.66602 2.40189 2.88775 2.99793 3.16349 3.27698 3.56423 3.79420 3.86956 3.94820 4.00321 4.10249 4.17015 4.19775 4.25581 4.28268 4.41230 4.45901 4.55667 4.62719 4.70503 4.72888 4.77722 4.79072 4.84829 4.91272 4.97550 5.05953 5.06235 5.10161 5.32514 5.63835 5.71677 5.78727 5.97030 6.18303 6.22951 6.30093 6.77935 6.99305 7.38929 7.67794 8.93659 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.003241 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.518783 B = 8637.953739 C = 9200.083626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.029 3.971 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.589 4.589 8 H 0.056 0.944 9 C 0.242 3.758 10 H 0.026 0.974 11 O -0.570 6.570 12 C 0.050 3.950 13 N -0.537 5.537 14 C 0.049 3.951 15 C 0.121 3.879 16 N -0.604 5.604 17 C 0.515 3.485 18 O -0.575 6.575 19 C 0.058 3.942 20 H 0.120 0.880 21 C -0.145 4.145 22 C -0.147 4.147 23 C 0.034 3.966 24 O -0.384 6.384 25 C 0.112 3.888 26 C 0.043 3.957 27 H 0.261 0.739 28 H 0.351 0.649 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -15.289 9.307 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.173 4.173 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.627 4.627 8 H 0.074 0.926 9 C 0.184 3.816 10 H 0.043 0.957 11 O -0.373 6.373 12 C -0.078 4.078 13 N -0.261 5.261 14 C -0.080 4.080 15 C -0.002 4.002 16 N -0.338 5.338 17 C 0.304 3.696 18 O -0.455 6.455 19 C -0.003 4.003 20 H 0.138 0.862 21 C -0.183 4.183 22 C -0.185 4.185 23 C -0.042 4.042 24 O -0.303 6.303 25 C -0.010 4.010 26 C -0.085 4.085 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.617 -15.886 9.073 18.305 hybrid contribution 1.598 1.237 0.013 2.020 sum 0.981 -14.649 9.086 17.266 Atomic orbital electron populations 1.70201 1.07471 1.27240 1.48401 1.25812 0.95423 1.02586 0.93509 0.85641 0.78765 0.79296 0.78330 1.20049 1.20955 1.19102 1.22063 0.93450 0.92980 1.54202 0.92574 1.19125 0.87751 0.89503 0.85200 0.95673 1.86509 1.38668 1.96409 1.15688 1.22713 0.95690 0.89426 0.99992 1.61837 1.38616 1.01809 1.23882 1.22470 0.93820 0.90444 1.01250 1.21674 0.96970 0.96987 0.84523 1.48179 1.52692 1.11584 1.21348 1.20835 0.80223 0.81683 0.86849 1.90670 1.44348 1.42380 1.68066 1.22995 1.00921 0.84812 0.91537 0.86246 1.23065 1.01717 0.99699 0.93816 1.22959 1.02815 0.95103 0.97618 1.23775 1.01423 0.99529 0.79453 1.89255 1.92417 1.25149 1.23496 1.22155 0.94414 0.83851 1.00625 1.22457 0.98401 0.98346 0.89335 0.93040 0.80460 0.95458 0.91305 0.95454 0.88688 0.89512 0.90138 0.91854 0.86695 0.90504 0.87275 0.87876 0.89861 0.89968 0.86321 0.90152 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.86 12.84 21.44 0.28 -51.58 16 2 C 0.03 1.59 5.40 84.65 0.46 2.05 16 3 Si 0.95 42.03 29.54 68.60 2.03 44.05 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.59 -30.99 8.76 25.60 0.22 -30.77 16 8 H 0.06 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.24 11.66 2.90 29.85 0.09 11.75 16 10 H 0.03 1.36 6.74 -2.39 -0.02 1.34 16 11 O -0.57 -28.54 12.64 -148.98 -1.88 -30.42 16 12 C 0.05 1.88 4.59 86.31 0.40 2.28 16 13 N -0.54 -17.37 4.46 -895.08 -4.00 -21.36 16 14 C 0.05 1.34 5.60 86.37 0.48 1.82 16 15 C 0.12 3.20 6.59 86.35 0.57 3.77 16 16 N -0.60 -15.46 3.01 -817.94 -2.46 -17.92 16 17 C 0.52 14.54 7.01 87.66 0.61 15.15 16 18 O -0.58 -21.34 16.01 15.32 0.25 -21.09 16 19 C 0.06 1.21 2.76 30.35 0.08 1.29 16 20 H 0.12 1.86 7.81 -2.39 -0.02 1.84 16 21 C -0.15 -2.24 5.61 31.61 0.18 -2.07 16 22 C -0.15 -1.74 7.09 31.61 0.22 -1.51 16 23 C 0.03 0.49 7.63 72.49 0.55 1.04 16 24 O -0.38 -9.53 10.92 -130.61 -1.43 -10.95 16 25 C 0.11 2.47 6.20 86.35 0.54 3.01 16 26 C 0.04 1.22 5.45 86.38 0.47 1.69 16 27 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.35 15.76 9.04 -74.06 -0.67 15.09 16 29 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 30 H 0.07 2.52 7.77 -2.39 -0.02 2.50 16 31 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 2.43 7.90 -2.39 -0.02 2.41 16 33 H 0.09 2.40 7.06 -2.39 -0.02 2.38 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.21 7.86 -2.39 -0.02 1.20 16 36 H 0.11 1.22 6.59 -2.38 -0.02 1.20 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.12 1.82 4.08 -2.39 -0.01 1.81 16 43 H 0.08 2.54 6.65 -2.38 -0.02 2.53 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -72.04 347.05 -2.01 -74.05 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.33 Total: 25.71 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.88 Total: 9.51 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -6.18 Total: -90.86 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -3.06 Total: -62.46 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -72.04 -2.01 -74.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.547 kcal (2) G-P(sol) polarization free energy of solvation -72.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds