Wall clock time and date at job start Tue Mar 31 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99727 * 2 1 4 4 H 1.08997 * 109.46868 * 30.00273 * 3 2 1 5 5 C 1.50696 * 109.47501 * 269.99760 * 3 2 1 6 6 O 1.20833 * 119.99595 * 355.00414 * 5 3 2 7 7 O 1.34224 * 120.00302 * 174.99885 * 5 3 2 8 8 C 1.45206 * 117.00077 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.46777 * 179.97438 * 8 7 5 10 10 O 1.42904 * 109.47221 * 65.00539 * 9 8 7 11 11 C 1.42898 * 113.99912 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99934 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99914 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99894 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00076 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46851 * 89.99942 * 16 14 12 18 18 H 1.48490 * 109.47377 * 209.99991 * 16 14 12 19 19 H 1.48505 * 109.47178 * 330.00411 * 16 14 12 20 20 C 1.50707 * 109.46849 * 149.99837 * 3 2 1 21 21 C 1.39871 * 126.03987 * 40.02930 * 20 3 2 22 22 N 1.30836 * 108.20324 * 179.97438 * 21 20 3 23 23 N 1.40083 * 108.20413 * 0.02562 * 22 21 20 24 24 C 1.46506 * 126.03741 * 179.97438 * 23 22 21 25 25 C 1.34953 * 107.92692 * 359.75446 * 23 22 21 26 26 H 1.09002 * 109.47319 * 299.99668 * 1 2 3 27 27 H 1.08999 * 109.46980 * 60.00067 * 1 2 3 28 28 H 1.09008 * 109.46718 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47070 * 300.00162 * 8 7 5 30 30 H 1.09001 * 109.46626 * 60.00180 * 8 7 5 31 31 H 1.09000 * 109.46738 * 185.00050 * 9 8 7 32 32 H 1.08994 * 109.47465 * 305.00137 * 9 8 7 33 33 H 1.09001 * 109.47167 * 299.99421 * 11 10 9 34 34 H 1.08999 * 109.47239 * 59.99584 * 11 10 9 35 35 H 0.96999 * 120.00107 * 180.02562 * 15 14 12 36 36 H 1.08002 * 125.89672 * 359.95504 * 21 20 3 37 37 H 1.09002 * 109.46818 * 89.97563 * 24 23 22 38 38 H 1.08998 * 109.46942 * 209.97332 * 24 23 22 39 39 H 1.09001 * 109.46824 * 329.97303 * 24 23 22 40 40 H 1.07997 * 126.12870 * 180.24227 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2145 1.7645 -1.4207 6 8 1.9800 1.0135 -2.3378 7 8 2.6569 3.0075 -1.6675 8 6 2.8301 3.3813 -3.0598 9 6 3.3363 4.8228 -3.1416 10 8 4.6408 4.9031 -2.5637 11 6 5.2083 6.2143 -2.5898 12 6 6.5761 6.1823 -1.9578 13 1 6.9721 5.2536 -1.5742 14 6 7.3219 7.3386 -1.8694 15 7 6.8394 8.4695 -2.3361 16 14 9.0169 7.2990 -1.0854 17 1 10.0373 7.0156 -2.1266 18 1 9.3026 8.6139 -0.4573 19 1 9.0585 6.2360 -0.0493 20 6 3.3386 1.2640 0.7105 21 6 4.2925 0.2457 0.6128 22 7 5.3096 0.5644 1.3716 23 7 5.0343 1.7970 1.9775 24 6 5.9108 2.5161 2.9055 25 6 3.8213 2.2075 1.5517 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.5542 2.7144 -3.5278 30 1 1.8748 3.3021 -3.5787 31 1 3.3817 5.1333 -4.1855 32 1 2.6566 5.4781 -2.5969 33 1 5.2927 6.5532 -3.6223 34 1 4.5675 6.8988 -2.0339 35 1 7.3642 9.2829 -2.2742 36 1 4.2046 -0.6492 0.0146 37 1 6.5669 3.1812 2.3440 38 1 5.3052 3.1020 3.5970 39 1 6.5121 1.8002 3.4658 40 1 3.3241 3.1238 1.8335 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815243728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:29 Heat of formation + Delta-G solvation = -91.698652 kcal Electronic energy + Delta-G solvation = -24297.022337 eV Core-core repulsion = 20500.863489 eV Total energy + Delta-G solvation = -3796.158848 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34442 -40.22474 -38.04562 -36.86195 -35.84122 -33.43255 -32.80403 -31.56865 -30.05050 -28.38607 -26.98757 -26.47079 -25.73050 -22.63871 -22.26188 -21.30578 -21.08368 -20.27935 -17.94523 -17.16426 -16.96086 -16.51710 -16.35347 -16.00366 -15.36656 -15.29376 -15.04882 -14.59135 -14.46483 -14.31149 -14.08371 -13.38910 -13.25556 -12.88672 -12.73445 -12.66678 -12.40097 -12.20386 -11.98431 -11.63612 -11.44146 -11.00216 -10.90927 -10.86937 -10.71742 -10.57816 -10.34655 -10.10133 -9.80032 -9.38895 -9.16046 -8.90192 -8.49793 -8.23920 -6.15546 -4.17092 1.83891 2.25107 2.53163 2.64284 2.79178 3.26176 3.31558 3.35992 3.71595 4.29068 4.52309 4.66296 4.72105 4.85182 4.91797 4.95392 5.12661 5.17116 5.20967 5.21872 5.25027 5.26920 5.46846 5.47977 5.49181 5.72481 5.86261 5.88785 5.92860 6.08436 6.57495 6.64675 6.75983 6.96058 7.02701 7.36723 7.69030 7.74717 7.92375 8.09628 8.50435 8.95887 9.47674 10.96019 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.004394 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.912911 B = 6370.942441 C = 8033.737210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.190 3.810 4 H 0.102 0.898 5 C 0.441 3.559 6 O -0.503 6.503 7 O -0.337 6.337 8 C 0.074 3.926 9 C 0.063 3.937 10 O -0.390 6.390 11 C 0.195 3.805 12 C -0.514 4.514 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.907 3.093 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.253 4.253 21 C 0.080 3.920 22 N -0.298 5.298 23 N -0.368 5.368 24 C 0.099 3.901 25 C 0.098 3.902 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.184 0.816 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 -11.981 8.927 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.267 6.267 3 C 0.129 3.871 4 H 0.120 0.880 5 C 0.283 3.717 6 O -0.391 6.391 7 O -0.253 6.253 8 C 0.000 4.000 9 C -0.015 4.015 10 O -0.309 6.309 11 C 0.120 3.880 12 C -0.552 4.552 13 H 0.084 0.916 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.734 3.266 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.265 4.265 21 C -0.107 4.107 22 N -0.119 5.119 23 N -0.148 5.148 24 C -0.042 4.042 25 C -0.050 4.050 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.201 0.799 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.750 -12.576 9.234 18.947 hybrid contribution -0.267 0.936 -0.410 1.056 sum -11.017 -11.640 8.824 18.296 Atomic orbital electron populations 1.22929 0.80364 1.03490 1.00206 1.88035 1.20167 1.24465 1.94012 1.19322 0.93394 0.86522 0.87890 0.88039 1.24428 0.73698 0.80459 0.93137 1.90641 1.47242 1.54711 1.46518 1.86580 1.76264 1.31170 1.31251 1.23200 1.00782 0.96944 0.79065 1.22312 0.88108 0.93100 0.97975 1.87937 1.28001 1.34047 1.80961 1.20226 0.93428 0.78337 0.95973 1.21034 0.99999 0.95314 1.38843 0.91647 1.24935 0.98782 0.94982 0.95712 1.69957 1.38038 0.99391 1.46375 0.86350 0.83386 0.77342 0.79489 1.20412 1.21030 1.19702 1.19159 0.98289 0.99652 1.09407 1.23675 0.90158 0.99375 0.97452 1.77410 1.23070 0.97406 1.13991 1.48468 1.14204 1.16262 1.35901 1.21953 0.94236 0.96449 0.91550 1.22219 0.87452 0.99129 0.96213 0.93552 0.93632 0.88929 0.90578 0.90534 0.92025 0.93262 0.97657 0.97550 0.92623 0.79872 0.89856 0.89266 0.89289 0.80247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.32 16 2 O -0.35 -4.35 9.67 -55.14 -0.53 -4.88 16 3 C 0.19 2.40 3.06 -29.03 -0.09 2.31 16 4 H 0.10 0.96 7.78 -51.93 -0.40 0.56 16 5 C 0.44 6.94 7.23 36.00 0.26 7.20 16 6 O -0.50 -8.93 16.26 -25.47 -0.41 -9.34 16 7 O -0.34 -5.74 10.18 -42.00 -0.43 -6.16 16 8 C 0.07 1.21 5.85 37.16 0.22 1.43 16 9 C 0.06 1.15 6.33 37.16 0.24 1.39 16 10 O -0.39 -9.50 10.30 -38.79 -0.40 -9.90 16 11 C 0.19 5.29 5.69 36.01 0.20 5.50 16 12 C -0.51 -15.06 9.43 -34.44 -0.32 -15.39 16 13 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 16 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.25 -3.49 5.09 -105.05 -0.53 -4.02 16 21 C 0.08 1.19 11.71 -17.36 -0.20 0.98 16 22 N -0.30 -4.69 12.58 30.63 0.39 -4.31 16 23 N -0.37 -5.01 4.01 -68.16 -0.27 -5.28 16 24 C 0.10 0.96 11.47 59.85 0.69 1.65 16 25 C 0.10 1.25 11.40 -17.22 -0.20 1.05 16 26 H 0.05 0.31 8.09 -51.93 -0.42 -0.11 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 30 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.18 2.44 8.06 -52.49 -0.42 2.01 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -36.43 358.31 -5.16 -41.59 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.86 Total: -2.87 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 1.25 Total: 4.96 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.85 Total: -35.37 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.77 Total: -30.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.43 -5.16 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815243728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.110 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds