Wall clock time and date at job start Tue Mar 31 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36541 * 127.14260 * 2 1 4 4 S 1.76199 * 126.48566 * 359.97438 * 3 2 1 5 5 N 1.31282 * 107.02928 * 179.71360 * 3 2 1 6 6 N 1.28527 * 109.85850 * 0.26365 * 5 3 2 7 7 C 1.30298 * 110.08070 * 359.97438 * 6 5 3 8 8 C 1.50694 * 126.34638 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47478 * 89.97674 * 8 7 6 10 10 C 1.52996 * 109.47569 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47058 * 180.02562 * 10 9 8 12 12 C 1.34780 * 119.99663 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99936 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99776 * 179.97438 * 12 11 10 15 15 C 1.52996 * 109.47171 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47171 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99893 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00077 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46795 * 60.00393 * 20 18 16 22 22 H 1.48495 * 109.47055 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47551 * 300.00539 * 20 18 16 24 24 H 1.09003 * 109.46898 * 90.02249 * 1 2 3 25 25 H 1.08996 * 109.47188 * 210.02349 * 1 2 3 26 26 H 1.09000 * 109.46758 * 330.02918 * 1 2 3 27 27 H 1.41005 * 100.00004 * 269.71232 * 4 3 2 28 28 H 1.08993 * 109.47688 * 209.98220 * 8 7 6 29 29 H 1.09000 * 109.46902 * 329.97882 * 8 7 6 30 30 H 1.09002 * 109.46839 * 300.00921 * 9 8 7 31 31 H 1.09000 * 109.46884 * 60.00197 * 9 8 7 32 32 H 1.08995 * 109.46903 * 300.00273 * 10 9 8 33 33 H 1.09000 * 109.47099 * 60.00031 * 10 9 8 34 34 H 0.96993 * 119.99914 * 359.97438 * 11 10 9 35 35 H 1.09003 * 109.47124 * 299.99894 * 14 12 11 36 36 H 1.09000 * 109.47122 * 59.99946 * 14 12 11 37 37 H 1.09003 * 109.47052 * 299.99989 * 15 14 12 38 38 H 1.09000 * 109.47099 * 59.99984 * 15 14 12 39 39 H 0.96996 * 119.99580 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2895 1.0884 0.0000 4 16 1.7928 2.7790 -0.0006 5 7 3.5222 0.6370 0.0063 6 7 3.5165 -0.6483 0.0046 7 6 2.2908 -1.0902 -0.0023 8 6 1.8623 -2.5350 -0.0058 9 6 1.7102 -3.0254 1.4354 10 6 1.2758 -4.4924 1.4319 11 7 1.1296 -4.9618 2.8119 12 6 0.7525 -6.2327 3.0551 13 8 0.5338 -6.9876 2.1314 14 6 0.6027 -6.7157 4.4747 15 6 0.1682 -8.1826 4.4711 16 6 0.0190 -8.6658 5.8907 17 1 0.2141 -7.9936 6.7132 18 6 -0.3677 -9.9657 6.1394 19 7 -0.6058 -10.7841 5.1378 20 14 -0.5520 -10.5648 7.8991 21 1 -1.5765 -9.7462 8.5960 22 1 -0.9750 -11.9882 7.8956 23 1 0.7483 -10.4360 8.6047 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 1.7310 3.0155 -1.3893 28 1 0.9084 -2.6298 -0.5244 29 1 2.6148 -3.1358 -0.5166 30 1 2.6643 -2.9305 1.9540 31 1 0.9578 -2.4246 1.9462 32 1 0.3220 -4.5876 0.9131 33 1 2.0286 -5.0930 0.9212 34 1 1.3049 -4.3581 3.5506 35 1 1.5566 -6.6202 4.9935 36 1 -0.1503 -6.1153 4.9851 37 1 -0.7858 -8.2777 3.9524 38 1 0.9209 -8.7833 3.9605 39 1 -0.8782 -11.6984 5.3129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818224004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:36 Heat of formation + Delta-G solvation = -1.649248 kcal Electronic energy + Delta-G solvation = -20517.410406 eV Core-core repulsion = 17200.202015 eV Total energy + Delta-G solvation = -3317.208391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.10556 -40.63767 -37.21089 -36.10086 -35.52985 -34.47274 -32.97810 -31.32121 -28.75261 -28.20161 -26.80333 -23.95627 -23.87554 -22.82282 -21.90903 -20.99676 -19.22300 -18.77902 -17.95757 -17.50799 -17.28768 -17.03881 -16.85201 -16.41741 -16.08791 -15.66695 -15.35997 -14.60509 -14.46564 -14.32114 -14.16030 -13.78895 -13.52220 -13.38179 -13.20689 -12.95371 -12.76163 -12.53300 -12.45992 -12.45228 -12.00130 -11.88067 -11.62053 -11.60908 -11.30450 -11.23958 -10.74243 -10.54599 -10.34887 -10.02333 -9.46072 -8.16504 -6.30404 -0.10686 0.23646 1.26112 1.43270 1.47589 1.51466 1.55312 1.75405 1.75673 2.29552 2.46731 3.14423 3.16278 3.61007 3.76443 3.95653 4.03369 4.09113 4.19282 4.30962 4.42043 4.54647 4.56819 4.59312 4.63439 4.67440 4.78388 4.87543 5.08694 5.10653 5.18854 5.48652 5.55040 5.61306 5.66100 5.87615 6.19657 6.64586 6.88224 7.38286 7.39932 7.40455 8.95791 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.038316 B = 0.001940 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.592978 B =14431.316127 C =14650.531938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.455 5.455 3 C 0.134 3.866 4 S 0.003 5.997 5 N -0.287 5.287 6 N -0.332 5.332 7 C 0.209 3.791 8 C -0.029 4.029 9 C -0.109 4.109 10 C 0.120 3.880 11 N -0.721 5.721 12 C 0.511 3.489 13 O -0.589 6.589 14 C -0.121 4.121 15 C 0.041 3.959 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.937 5.937 20 Si 0.974 3.026 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.416 0.584 35 H 0.102 0.898 36 H 0.105 0.895 37 H -0.016 1.016 38 H -0.019 1.019 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 29.766 -11.016 31.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.146 5.146 3 C -0.242 4.242 4 S 0.152 5.848 5 N -0.131 5.131 6 N -0.174 5.174 7 C -0.060 4.060 8 C -0.069 4.069 9 C -0.148 4.148 10 C -0.004 4.004 11 N -0.374 5.374 12 C 0.300 3.700 13 O -0.469 6.469 14 C -0.161 4.161 15 C 0.004 3.996 16 C -0.582 4.582 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.797 3.203 21 H -0.186 1.186 22 H -0.214 1.214 23 H -0.188 1.188 24 H 0.122 0.878 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.089 0.911 28 H 0.137 0.863 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.002 0.998 38 H 0.000 1.000 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.964 29.954 -11.486 32.095 hybrid contribution -0.928 -1.339 -0.171 1.638 sum 0.036 28.615 -11.656 30.898 Atomic orbital electron populations 1.22709 0.71822 1.07917 1.06407 1.47236 1.10716 1.04788 1.51908 1.26340 0.89535 0.96050 1.12237 1.87027 1.87404 0.96115 1.14239 1.74706 1.18628 1.03502 1.16242 1.74068 1.19556 1.03287 1.20469 1.25546 0.86433 0.93283 1.00770 1.20143 1.04981 0.83284 0.98529 1.21591 1.03279 0.93826 0.96114 1.21316 1.01616 0.94450 0.83024 1.45887 1.70001 1.11804 1.09719 1.21261 0.74899 0.81760 0.92123 1.90658 1.51778 1.56575 1.47893 1.21641 1.04200 0.98334 0.91939 1.18690 0.94410 0.91065 0.95484 1.21707 1.46088 0.97190 0.93240 0.90632 1.26143 0.94943 0.97278 1.02159 1.70169 1.47501 1.06448 1.33576 0.85379 0.79209 0.76964 0.78713 1.18636 1.21392 1.18824 0.87772 0.86505 0.86567 0.91145 0.86255 0.87408 0.90830 0.89333 0.91248 0.92458 0.74727 0.87987 0.87646 0.99793 1.00041 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.15 10.79 127.77 1.38 1.53 16 2 N -0.45 -5.84 3.21 -536.43 -1.72 -7.57 16 3 C 0.13 2.37 8.37 179.55 1.50 3.88 16 4 S 0.00 0.03 25.78 -56.49 -1.46 -1.42 16 5 N -0.29 -7.30 12.23 -56.85 -0.70 -8.00 16 6 N -0.33 -8.31 12.17 -49.52 -0.60 -8.91 16 7 C 0.21 3.48 7.32 137.63 1.01 4.49 16 8 C -0.03 -0.31 5.43 29.85 0.16 -0.15 16 9 C -0.11 -1.28 5.31 30.59 0.16 -1.12 16 10 C 0.12 2.25 5.67 86.38 0.49 2.74 16 11 N -0.72 -17.06 5.56 -463.07 -2.57 -19.63 16 12 C 0.51 18.74 7.83 87.66 0.69 19.43 16 13 O -0.59 -27.88 15.98 -3.03 -0.05 -27.93 16 14 C -0.12 -4.72 5.64 29.85 0.17 -4.55 16 15 C 0.04 2.27 4.26 29.85 0.13 2.40 16 16 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 17 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 18 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 19 N -0.94 -59.26 13.29 21.45 0.28 -58.97 16 20 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.12 -0.02 7.91 -2.39 -0.02 -0.04 16 26 H 0.12 0.08 7.86 -2.39 -0.02 0.07 16 27 H 0.12 0.80 9.55 73.80 0.70 1.51 16 28 H 0.12 0.60 7.95 -2.39 -0.02 0.58 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.42 6.97 8.47 -92.71 -0.79 6.19 16 35 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 37 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 38 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -86.95 353.39 2.59 -84.37 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.00 Total: 3.89 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 6.38 Total: -1.91 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -5.31 Total: -103.09 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.46 Total: -1.42 kcal Total: -86.95 2.59 -84.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818224004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.717 kcal (2) G-P(sol) polarization free energy of solvation -86.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds