Wall clock time and date at job start Tue Mar 31 2020 04:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99680 * 2 1 4 4 H 1.48494 * 109.47278 * 240.00025 * 3 2 1 5 5 H 1.48508 * 109.47392 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47329 * 119.99998 * 3 2 1 7 7 C 1.37876 * 120.00482 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00475 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99729 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.52277 * 300.08621 * 9 7 2 11 11 C 1.53040 * 109.50035 * 179.97438 * 9 7 2 12 12 C 1.53031 * 109.54100 * 178.68251 * 11 9 7 13 13 C 1.53196 * 109.31355 * 61.36675 * 12 11 9 14 14 N 1.46930 * 108.77409 * 305.36416 * 13 12 11 15 15 C 1.34771 * 120.63057 * 233.58302 * 14 13 12 16 16 O 1.21586 * 120.00105 * 185.03033 * 15 14 13 17 17 N 1.34781 * 120.00192 * 5.03963 * 15 14 13 18 18 C 1.46502 * 120.00029 * 174.92635 * 17 15 14 19 19 C 1.52996 * 109.46841 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.52792 * 304.99997 * 19 18 17 21 21 C 1.53142 * 109.52458 * 184.86669 * 19 18 17 22 22 O 1.43221 * 109.07551 * 184.78047 * 21 19 18 23 23 C 1.43071 * 113.62698 * 57.91661 * 22 21 19 24 24 C 1.53145 * 109.15111 * 302.04376 * 23 22 21 25 25 O 1.43073 * 109.14678 * 55.31418 * 24 23 22 26 26 C 1.46930 * 118.73784 * 53.85846 * 14 13 12 27 27 H 0.96999 * 120.00499 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.45898 * 58.66157 * 11 9 7 29 29 H 1.08997 * 109.44446 * 298.69900 * 11 9 7 30 30 H 1.09000 * 109.49977 * 301.41667 * 12 11 9 31 31 H 1.08996 * 109.49960 * 181.31722 * 12 11 9 32 32 H 1.08999 * 109.58499 * 185.57961 * 13 12 11 33 33 H 1.08998 * 109.70212 * 65.22066 * 13 12 11 34 34 H 0.97005 * 119.99476 * 354.91628 * 17 15 14 35 35 H 1.08998 * 109.47147 * 59.99515 * 18 17 15 36 36 H 1.08997 * 109.46895 * 299.99393 * 18 17 15 37 37 H 1.08991 * 109.52642 * 304.62382 * 21 19 18 38 38 H 1.09001 * 109.52495 * 64.82072 * 21 19 18 39 39 H 1.09001 * 109.52581 * 182.14325 * 23 22 21 40 40 H 1.09002 * 109.52352 * 61.94955 * 23 22 21 41 41 H 1.08991 * 109.52218 * 295.40965 * 24 23 22 42 42 H 1.09003 * 109.57629 * 175.24362 * 24 23 22 43 43 H 1.09004 * 109.58372 * 65.92539 * 26 14 13 44 44 H 1.08998 * 109.58465 * 186.35018 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6227 -2.5569 0.8893 11 6 2.2451 -3.6628 0.0005 12 6 1.4812 -4.9884 0.0337 13 6 0.6059 -5.1003 -1.2186 14 7 -0.2527 -3.9110 -1.3032 15 6 -1.5890 -4.0361 -1.4257 16 8 -2.2799 -3.0487 -1.5866 17 7 -2.1596 -5.2559 -1.3697 18 6 -3.6189 -5.3837 -1.3911 19 6 -4.0024 -6.8630 -1.3179 20 1 -3.5070 -7.4080 -2.1215 21 6 -5.5202 -7.0060 -1.4623 22 8 -5.8802 -8.3803 -1.2809 23 6 -5.4749 -8.9174 -0.0183 24 6 -3.9571 -8.7730 0.1252 25 8 -3.5971 -7.4002 -0.0552 26 6 0.3737 -2.5827 -1.2577 27 1 -0.4851 0.8400 -0.0004 28 1 2.8874 -3.5917 0.8784 29 1 2.8561 -3.6181 -0.9010 30 1 0.8510 -5.0230 0.9223 31 1 2.1899 -5.8162 0.0573 32 1 -0.0138 -5.9945 -1.1525 33 1 1.2380 -5.1584 -2.1047 34 1 -1.6039 -6.0492 -1.3154 35 1 -4.0078 -4.9531 -2.3138 36 1 -4.0423 -4.8555 -0.5369 37 1 -6.0170 -6.3968 -0.7072 38 1 -5.8244 -6.6762 -2.4557 39 1 -5.7471 -9.9716 0.0335 40 1 -5.9703 -8.3724 0.7853 41 1 -3.4603 -9.3822 -0.6298 42 1 -3.6511 -9.1024 1.1182 43 1 0.9891 -2.4384 -2.1458 44 1 -0.3993 -1.8153 -1.2176 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851995397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:51 Heat of formation + Delta-G solvation = -141.100173 kcal Electronic energy + Delta-G solvation = -25164.394993 eV Core-core repulsion = 21501.927028 eV Total energy + Delta-G solvation = -3662.467964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.41846 -40.78279 -38.52086 -37.19340 -35.93415 -35.19879 -33.54894 -32.55296 -31.43521 -29.58603 -27.36490 -26.83856 -25.61505 -24.04060 -23.41961 -22.22936 -21.66063 -20.34858 -19.16898 -18.26361 -17.99717 -17.53024 -17.43069 -16.85902 -16.57736 -16.26521 -16.14944 -15.99802 -15.20774 -15.15489 -14.97487 -14.58208 -14.41090 -14.26082 -14.20563 -13.65628 -13.49431 -13.29085 -12.84992 -12.81565 -12.68622 -12.41436 -12.27132 -12.22772 -11.85557 -11.72293 -11.62367 -11.37283 -11.23412 -10.94868 -10.83361 -10.50050 -10.21005 -10.16871 -9.25056 -8.08480 -6.25954 1.41914 1.43667 1.52083 1.74072 2.26004 2.43366 2.56588 2.73232 3.02611 3.20833 3.61403 3.72032 3.92062 4.03028 4.07714 4.16536 4.17234 4.28077 4.33074 4.44552 4.57194 4.61009 4.62099 4.72747 4.75907 4.81100 4.85748 4.88714 4.90779 5.11163 5.27604 5.28790 5.33287 5.49528 5.57827 5.65368 5.89575 5.95868 5.98549 6.03031 6.16989 6.37220 6.86935 7.12491 7.43905 7.67349 8.94751 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.027264 B = 0.003288 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.737955 B = 8513.942998 C = 9111.148171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.009 3.991 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.039 3.961 10 H -0.016 1.016 11 C -0.104 4.104 12 C -0.125 4.125 13 C 0.111 3.889 14 N -0.627 5.627 15 C 0.694 3.306 16 O -0.640 6.640 17 N -0.730 5.730 18 C 0.148 3.852 19 C 0.056 3.944 20 H 0.090 0.910 21 C 0.034 3.966 22 O -0.392 6.392 23 C 0.018 3.982 24 C 0.021 3.979 25 O -0.394 6.394 26 C 0.144 3.856 27 H 0.259 0.741 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.408 0.592 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.122 0.878 43 H 0.035 0.965 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.650 -22.222 -2.456 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.020 3.980 10 H 0.002 0.998 11 C -0.142 4.142 12 C -0.163 4.163 13 C -0.011 4.011 14 N -0.363 5.363 15 C 0.395 3.605 16 O -0.522 6.522 17 N -0.390 5.390 18 C 0.024 3.976 19 C -0.002 4.002 20 H 0.107 0.893 21 C -0.043 4.043 22 O -0.311 6.311 23 C -0.059 4.059 24 C -0.056 4.056 25 O -0.314 6.314 26 C 0.021 3.979 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.247 0.753 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.053 0.947 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.304 -21.413 -2.555 22.768 hybrid contribution 0.413 1.123 0.305 1.235 sum -6.891 -20.289 -2.250 21.545 Atomic orbital electron populations 1.70099 1.07473 1.27290 1.50506 1.25920 0.95553 1.02999 0.94605 0.85603 0.78238 0.78689 0.79085 1.19129 1.21530 1.19323 1.21502 0.93308 0.91511 1.51257 0.91881 1.18986 0.93065 0.93802 0.92191 0.99775 1.21500 0.97618 0.94124 1.00949 1.21896 0.98943 0.98293 0.97175 1.21850 0.93518 0.86593 0.99188 1.47678 1.04096 1.08997 1.75546 1.16174 0.82489 0.83788 0.78035 1.90872 1.63051 1.38953 1.59326 1.44941 1.07542 1.06211 1.80322 1.21111 0.79652 0.94432 1.02419 1.22904 0.96410 0.93325 0.87569 0.89259 1.23216 0.92901 0.83450 1.04728 1.88107 1.79787 1.25879 1.37280 1.23460 0.94910 1.01711 0.85787 1.23468 0.95291 0.82241 1.04557 1.88164 1.80034 1.27252 1.35959 1.21667 0.96702 0.81853 0.97659 0.93185 0.92995 0.92288 0.93407 0.87722 0.88541 0.90083 0.75327 0.89583 0.93023 0.91862 0.85639 0.85389 0.92212 0.91057 0.86045 0.94705 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.91 11.41 21.45 0.24 -56.67 16 2 C 0.01 0.50 5.30 84.65 0.45 0.94 16 3 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.54 -30.09 8.56 25.60 0.22 -29.87 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.01 2.26 -11.32 -0.03 1.99 16 10 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 11 C -0.10 -4.07 5.10 30.62 0.16 -3.92 16 12 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 13 C 0.11 3.22 6.43 86.36 0.56 3.77 16 14 N -0.63 -26.11 2.97 -836.04 -2.48 -28.58 16 15 C 0.69 29.74 8.30 179.05 1.49 31.23 16 16 O -0.64 -34.35 15.78 -3.99 -0.06 -34.42 16 17 N -0.73 -22.31 5.42 -478.54 -2.59 -24.90 16 18 C 0.15 3.89 5.35 86.38 0.46 4.36 16 19 C 0.06 1.06 2.87 30.64 0.09 1.15 16 20 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 21 C 0.03 0.57 6.35 72.03 0.46 1.03 16 22 O -0.39 -6.90 10.85 -136.00 -1.48 -8.38 16 23 C 0.02 0.23 7.05 72.03 0.51 0.74 16 24 C 0.02 0.28 7.05 72.03 0.51 0.78 16 25 O -0.39 -8.16 10.44 -136.00 -1.42 -9.58 16 26 C 0.14 7.42 5.41 86.51 0.47 7.89 16 27 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.10 2.11 5.57 -2.39 -0.01 2.09 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.41 9.88 5.93 -92.70 -0.55 9.33 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.03 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.07 4.57 5.18 -2.39 -0.01 4.56 16 Total: -1.00 -78.22 346.85 0.20 -78.02 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.44 Total: 21.05 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 5.52 Total: 16.52 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -4.83 Total: -110.16 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -2.96 Total: -52.37 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -78.22 0.20 -78.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851995397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.082 kcal (2) G-P(sol) polarization free energy of solvation -78.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds