Wall clock time and date at job start Tue Mar 31 2020 03:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34226 * 125.74536 * 2 1 4 4 C 1.38121 * 107.40809 * 180.28705 * 3 2 1 5 5 C 1.47283 * 126.42656 * 179.73714 * 4 3 2 6 6 O 1.21524 * 120.00384 * 359.97438 * 5 4 3 7 7 O 1.34757 * 120.00020 * 180.02562 * 5 4 3 8 8 C 1.45193 * 117.00226 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47453 * 179.97438 * 8 7 5 10 10 O 1.42897 * 109.47362 * 64.99690 * 9 8 7 11 11 C 1.42898 * 114.00479 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47360 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47023 * 65.00066 * 12 11 10 14 14 C 1.42895 * 113.99755 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46889 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00048 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99753 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99851 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00018 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.46688 * 90.00464 * 19 17 15 21 21 H 1.48499 * 109.47151 * 209.99795 * 19 17 15 22 22 H 1.48493 * 109.47485 * 330.00298 * 19 17 15 23 23 C 1.41347 * 107.14704 * 359.58651 * 4 3 2 24 24 N 1.30438 * 108.01141 * 0.41786 * 23 4 3 25 25 H 1.08999 * 109.47127 * 89.99739 * 1 2 3 26 26 H 1.08999 * 109.46988 * 210.00374 * 1 2 3 27 27 H 1.09003 * 109.46267 * 329.99728 * 1 2 3 28 28 H 1.08002 * 126.29297 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.47028 * 299.99462 * 8 7 5 30 30 H 1.08994 * 109.47296 * 59.99388 * 8 7 5 31 31 H 1.09003 * 109.47093 * 184.99606 * 9 8 7 32 32 H 1.08999 * 109.47027 * 304.99707 * 9 8 7 33 33 H 1.09001 * 109.47122 * 300.00419 * 11 10 9 34 34 H 1.09002 * 109.46674 * 59.99554 * 11 10 9 35 35 H 1.08998 * 109.46895 * 185.00109 * 12 11 10 36 36 H 1.09003 * 109.47204 * 305.00007 * 12 11 10 37 37 H 1.09000 * 109.47367 * 299.99935 * 14 13 12 38 38 H 1.09002 * 109.47402 * 60.00168 * 14 13 12 39 39 H 0.97001 * 119.99923 * 179.97438 * 18 17 15 40 40 H 1.07998 * 125.99370 * 180.15848 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2492 1.0894 0.0000 4 6 3.5602 0.6549 -0.0066 5 6 4.7632 1.5046 -0.0144 6 8 4.6524 2.7148 -0.0160 7 8 5.9868 0.9402 -0.0209 8 6 7.1273 1.8387 -0.0279 9 6 8.4206 1.0214 -0.0339 10 8 8.5127 0.2843 -1.2546 11 6 9.6906 -0.5176 -1.3621 12 6 9.6835 -1.2573 -2.7014 13 8 9.7716 -0.3112 -3.7686 14 6 9.7732 -0.9014 -5.0700 15 6 9.8697 0.1821 -6.1129 16 1 9.9247 1.2179 -5.8120 17 6 9.8876 -0.1489 -7.4513 18 7 9.9713 0.7968 -8.3614 19 14 9.7932 -1.9405 -7.9717 20 1 8.3711 -2.3299 -8.1495 21 1 10.5202 -2.1225 -9.2537 22 1 10.4128 -2.7931 -6.9257 23 6 3.5309 -0.7583 -0.0009 24 7 2.2824 -1.1358 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.9161 2.1168 0.0004 29 1 7.0897 2.4666 -0.9181 30 1 7.0996 2.4679 0.8618 31 1 9.2752 1.6928 0.0504 32 1 8.4174 0.3299 0.8087 33 1 10.5717 0.1216 -1.3051 34 1 9.7132 -1.2410 -0.5471 35 1 10.5353 -1.9359 -2.7461 36 1 8.7594 -1.8275 -2.7967 37 1 10.6272 -1.5724 -5.1636 38 1 8.8512 -1.4645 -5.2147 39 1 9.9843 0.5639 -9.3030 40 1 4.3914 -1.4110 -0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861318520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:47 Heat of formation + Delta-G solvation = -123.299782 kcal Electronic energy + Delta-G solvation = -23025.966459 eV Core-core repulsion = 19228.437283 eV Total energy + Delta-G solvation = -3797.529176 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.45589 -40.99894 -39.32037 -38.20558 -37.25564 -34.88941 -34.46489 -32.37181 -31.55189 -30.57595 -29.13670 -28.13219 -24.87873 -24.02734 -23.36864 -23.29826 -22.13841 -21.40139 -19.16655 -19.07454 -18.22846 -17.98360 -17.58845 -17.18425 -16.77708 -16.59693 -16.46650 -16.05368 -15.97815 -15.59551 -15.35411 -14.68108 -14.45710 -14.29303 -14.02887 -13.76640 -13.52001 -13.47301 -13.42898 -13.17009 -12.77769 -12.65282 -12.41774 -12.15495 -11.98078 -11.82196 -11.60921 -11.44014 -11.36038 -10.93471 -10.67726 -10.52885 -10.35210 -9.89282 -8.37924 -6.46144 0.28519 0.97995 1.28858 1.32863 1.36765 1.47639 1.83306 2.13874 2.29469 2.71033 2.94480 3.10285 3.48221 3.72108 3.88126 3.94984 4.10004 4.13836 4.23059 4.28288 4.37706 4.41223 4.46722 4.53028 4.53371 4.59550 4.63427 4.67929 4.69998 4.80018 4.86885 5.01109 5.29745 5.43065 5.43226 5.77055 5.93056 6.31265 6.40268 6.57959 6.76437 6.78999 7.18398 8.79581 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.002873 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.106326 B = 9743.075532 C =10819.989321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.357 5.357 3 C 0.150 3.850 4 C -0.313 4.313 5 C 0.544 3.456 6 O -0.552 6.552 7 O -0.350 6.350 8 C 0.068 3.932 9 C 0.061 3.939 10 O -0.409 6.409 11 C 0.070 3.930 12 C 0.045 3.955 13 O -0.406 6.406 14 C 0.179 3.821 15 C -0.548 4.548 16 H 0.026 0.974 17 C 0.010 3.990 18 N -0.944 5.944 19 Si 0.959 3.041 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.241 1.241 23 C 0.103 3.897 24 N -0.326 5.326 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.220 0.780 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.018 0.982 38 H 0.007 0.993 39 H 0.273 0.727 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.118 -4.872 24.263 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.134 5.134 3 C -0.004 4.004 4 C -0.326 4.326 5 C 0.392 3.608 6 O -0.445 6.445 7 O -0.266 6.266 8 C -0.005 4.005 9 C -0.015 4.015 10 O -0.329 6.329 11 C -0.006 4.006 12 C -0.032 4.032 13 O -0.326 6.326 14 C 0.103 3.897 15 C -0.586 4.586 16 H 0.045 0.955 17 C -0.187 4.187 18 N -0.583 5.583 19 Si 0.780 3.220 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.165 1.165 23 C -0.085 4.085 24 N -0.146 5.146 25 H 0.112 0.888 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.237 0.763 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.082 0.918 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -17.225 -5.306 23.969 29.990 hybrid contribution 0.889 0.491 -0.650 1.206 sum -16.336 -4.814 23.319 28.876 Atomic orbital electron populations 1.22487 0.70325 1.07066 1.05558 1.48885 1.08951 1.03042 1.52570 1.23402 0.89011 0.95217 0.92765 1.19458 0.91294 0.93788 1.28032 1.20263 0.83339 0.85885 0.71348 1.90802 1.87871 1.16335 1.49468 1.86561 1.14762 1.41363 1.83919 1.23267 0.82124 0.91748 1.03397 1.22734 0.95159 0.95929 0.87669 1.88044 1.42999 1.62367 1.39493 1.22640 0.87631 0.94593 0.95700 1.22795 1.01152 0.92189 0.87015 1.87920 1.94912 1.34779 1.14993 1.20321 0.95042 0.93545 0.80784 1.21192 1.52164 0.93832 0.91371 0.95530 1.25906 0.93390 1.03830 0.95606 1.70043 1.50958 1.35590 1.01710 0.85559 0.79653 0.77995 0.78820 1.18630 1.19593 1.16471 1.24473 0.95696 0.93819 0.94474 1.77221 1.02250 1.08947 1.26149 0.88836 0.88039 0.85680 0.76315 0.92419 0.87354 0.89079 0.89668 0.92309 0.88114 0.90212 0.93189 0.96414 0.97513 0.91757 0.77522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.44 127.77 1.46 1.90 16 2 N -0.36 -5.62 3.98 -367.72 -1.46 -7.08 16 3 C 0.15 2.54 11.30 84.30 0.95 3.49 16 4 C -0.31 -7.29 6.13 -20.16 -0.12 -7.42 16 5 C 0.54 15.28 7.95 70.20 0.56 15.84 16 6 O -0.55 -17.62 16.69 19.76 0.33 -17.29 16 7 O -0.35 -9.73 10.04 -54.02 -0.54 -10.27 16 8 C 0.07 1.70 5.85 71.98 0.42 2.12 16 9 C 0.06 1.36 6.33 71.98 0.46 1.81 16 10 O -0.41 -13.22 10.28 -136.02 -1.40 -14.62 16 11 C 0.07 1.93 6.32 71.98 0.45 2.38 16 12 C 0.05 1.56 6.32 71.98 0.45 2.01 16 13 O -0.41 -20.00 10.29 -144.34 -1.49 -21.48 16 14 C 0.18 9.37 4.76 71.24 0.34 9.71 16 15 C -0.55 -34.83 9.99 25.60 0.26 -34.58 16 16 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 17 C 0.01 0.63 5.47 84.66 0.46 1.10 16 18 N -0.94 -61.07 13.96 21.45 0.30 -60.77 16 19 Si 0.96 44.45 27.47 68.60 1.88 46.33 16 20 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 23 C 0.10 2.27 11.87 85.66 1.02 3.28 16 24 N -0.33 -7.08 12.50 -56.24 -0.70 -7.78 16 25 H 0.09 0.34 8.14 -2.39 -0.02 0.33 16 26 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 38 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 39 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 40 H 0.21 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -88.28 356.48 4.61 -83.68 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.97 Total: 7.62 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.71 Total: 1.66 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.87 Total: -75.63 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -3.10 Total: -63.66 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -88.28 4.61 -83.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861318520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.624 kcal (2) G-P(sol) polarization free energy of solvation -88.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds