Wall clock time and date at job start Tue Mar 31 2020 03:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47473 * 180.02562 * 4 3 2 6 6 C 1.34221 * 125.74094 * 124.99860 * 5 4 3 7 7 C 1.38129 * 107.40805 * 179.97438 * 6 5 4 8 8 C 1.47285 * 126.42963 * 179.97438 * 7 6 5 9 9 O 1.21526 * 119.99823 * 359.97438 * 8 7 6 10 10 O 1.34752 * 119.99828 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99889 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47224 * 180.02562 * 11 10 8 13 13 O 1.42887 * 109.47115 * 65.00411 * 12 11 10 14 14 C 1.42902 * 114.00229 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47351 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00308 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00442 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99873 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47487 * 89.99576 * 19 17 15 21 21 H 1.48504 * 109.47140 * 210.00098 * 19 17 15 22 22 H 1.48508 * 109.46851 * 329.99821 * 19 17 15 23 23 C 1.41346 * 107.14425 * 359.97438 * 7 6 5 24 24 N 1.30429 * 108.01226 * 359.76280 * 23 7 6 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 32 32 H 1.07996 * 126.30135 * 359.96823 * 6 5 4 33 33 H 1.08995 * 109.47589 * 300.00442 * 11 10 8 34 34 H 1.09006 * 109.46811 * 60.00635 * 11 10 8 35 35 H 1.08999 * 109.47096 * 185.00719 * 12 11 10 36 36 H 1.09000 * 109.47215 * 305.00091 * 12 11 10 37 37 H 1.08993 * 109.47110 * 299.99885 * 14 13 12 38 38 H 1.09003 * 109.46768 * 60.00076 * 14 13 12 39 39 H 0.96999 * 120.00300 * 180.02562 * 18 17 15 40 40 H 1.07994 * 125.99294 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0215 2.9844 0.8924 7 6 5.3275 4.2836 0.5368 8 6 6.2622 5.1839 1.2333 9 8 6.8505 4.8000 2.2250 10 8 6.4649 6.4333 0.7710 11 6 7.3992 7.2654 1.5079 12 6 7.4976 8.6377 0.8386 13 8 6.2385 9.3062 0.9356 14 6 6.2221 10.6044 0.3386 15 6 4.8529 11.2135 0.4980 16 1 4.0733 10.6643 1.0050 17 6 4.5957 12.4722 -0.0023 18 7 3.4010 13.0040 0.1372 19 14 5.9444 13.4225 -0.8786 20 1 5.9080 13.1092 -2.3297 21 1 5.7322 14.8790 -0.6811 22 1 7.2652 13.0346 -0.3215 23 6 4.5755 4.5869 -0.6209 24 7 3.8735 3.5330 -0.9334 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.8575 0.6435 0.8891 31 1 3.8568 0.6439 -0.8908 32 1 5.4243 2.4402 1.7337 33 1 7.0485 7.3857 2.5328 34 1 8.3812 6.7921 1.5130 35 1 8.2635 9.2313 1.3377 36 1 7.7622 8.5118 -0.2112 37 1 6.9614 11.2386 0.8277 38 1 6.4604 10.5197 -0.7217 39 1 3.2200 13.8894 -0.2151 40 1 4.5835 5.5255 -1.1551 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869743448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:08 Heat of formation + Delta-G solvation = -95.189111 kcal Electronic energy + Delta-G solvation = -22858.502127 eV Core-core repulsion = 19062.191921 eV Total energy + Delta-G solvation = -3796.310206 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66310 -39.83255 -38.44842 -37.12805 -35.94637 -34.32141 -32.68093 -30.89517 -30.41186 -29.50705 -27.57613 -26.79882 -24.30776 -23.54526 -22.08790 -21.81911 -21.00560 -20.36932 -18.25873 -17.11896 -16.99894 -16.80962 -16.56894 -16.41000 -15.89736 -15.57329 -15.33629 -14.91662 -14.76641 -14.43693 -14.32665 -13.84350 -13.38509 -13.13773 -12.97365 -12.53263 -12.50276 -12.40741 -12.14679 -11.85868 -11.69102 -11.31491 -11.10583 -10.84161 -10.62996 -10.40687 -10.29474 -10.23178 -9.89443 -9.86341 -9.19224 -9.03150 -8.88929 -8.49313 -6.11093 -4.10283 1.15048 1.79067 1.95023 2.90219 3.19406 3.25091 3.26149 3.32032 3.32829 4.10102 4.35468 4.35632 4.44615 4.51715 4.61996 4.71020 4.85281 4.87182 4.90373 5.05234 5.13787 5.20004 5.20233 5.21470 5.29044 5.43519 5.46131 5.74038 5.85182 6.02512 6.22882 6.38278 6.53900 6.57374 6.63176 6.98291 7.26204 7.58637 7.94620 7.99630 8.64868 9.00704 9.47753 11.01916 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.002558 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.593093 B =10945.421473 C =12188.340639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.049 3.951 4 C 0.135 3.865 5 N -0.362 5.362 6 C 0.138 3.862 7 C -0.275 4.275 8 C 0.545 3.455 9 O -0.529 6.529 10 O -0.336 6.336 11 C 0.077 3.923 12 C 0.057 3.943 13 O -0.375 6.375 14 C 0.168 3.832 15 C -0.518 4.518 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 C 0.113 3.887 24 N -0.300 5.300 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.192 0.808 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.004 0.996 38 H 0.001 0.999 39 H 0.266 0.734 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 -25.809 -0.563 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.028 4.028 4 C 0.014 3.986 5 N -0.141 5.141 6 C -0.013 4.013 7 C -0.288 4.288 8 C 0.390 3.610 9 O -0.420 6.420 10 O -0.252 6.252 11 C 0.003 3.997 12 C -0.020 4.020 13 O -0.294 6.294 14 C 0.093 3.907 15 C -0.556 4.556 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.191 1.191 23 C -0.075 4.075 24 N -0.119 5.119 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.209 0.791 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.076 0.924 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.879 -26.614 -1.058 26.650 hybrid contribution 1.303 1.387 0.104 1.906 sum 2.182 -25.227 -0.954 25.339 Atomic orbital electron populations 1.22795 0.79760 1.03131 1.00585 1.87761 1.20739 1.26839 1.95653 1.22659 0.92280 0.85449 1.02455 1.21503 0.92933 0.78404 1.05773 1.48363 1.32723 1.12359 1.20667 1.22941 0.90476 0.93885 0.93988 1.19369 1.10403 0.95059 1.03985 1.19905 0.79087 0.80602 0.81372 1.90809 1.48745 1.76463 1.25982 1.86624 1.60222 1.23652 1.54687 1.23158 0.91474 0.88688 0.96351 1.22404 0.89325 0.90569 0.99729 1.87981 1.29226 1.32315 1.79883 1.20631 0.98590 0.79793 0.91699 1.20880 0.95555 1.01267 1.37938 0.89919 1.24772 0.95596 0.96936 0.95706 1.69873 1.20604 1.16785 1.46092 0.86847 0.82714 0.79585 0.80560 1.19890 1.20807 1.19104 1.24412 0.91417 0.97676 0.94025 1.77275 1.24598 0.96880 1.13097 0.89143 0.93680 0.93571 0.91230 0.92371 0.87244 0.88151 0.79091 0.90327 0.90291 0.91838 0.93010 0.97865 0.98149 0.92359 0.77960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.02 10.70 -35.23 -0.38 -3.40 16 3 C 0.05 0.36 6.12 37.16 0.23 0.59 16 4 C 0.14 0.88 6.86 -4.04 -0.03 0.85 16 5 N -0.36 -3.50 3.65 -60.80 -0.22 -3.72 16 6 C 0.14 1.38 11.25 -16.55 -0.19 1.19 16 7 C -0.28 -3.56 6.13 -105.08 -0.64 -4.20 16 8 C 0.54 8.36 7.95 34.41 0.27 8.63 16 9 O -0.53 -8.82 16.69 -19.29 -0.32 -9.14 16 10 O -0.34 -5.56 10.04 -43.41 -0.44 -6.00 16 11 C 0.08 1.18 5.85 37.16 0.22 1.40 16 12 C 0.06 0.98 6.33 37.16 0.24 1.21 16 13 O -0.37 -8.71 10.30 -38.80 -0.40 -9.11 16 14 C 0.17 4.24 4.76 36.01 0.17 4.41 16 15 C -0.52 -15.43 9.99 -34.44 -0.34 -15.78 16 16 H 0.08 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 19 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 23 C 0.11 1.42 11.87 -16.97 -0.20 1.22 16 24 N -0.30 -3.66 12.33 30.87 0.38 -3.27 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.11 0.45 8.06 -51.93 -0.42 0.03 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 38 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.20 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -35.90 356.19 -5.01 -40.92 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -5.85 Total: -4.22 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 0.74 Total: 2.84 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.93 Total: -33.85 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.53 Total: -27.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.90 -5.01 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869743448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.273 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds