Wall clock time and date at job start Tue Mar 31 2020 03:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47473 * 180.02562 * 4 3 2 6 6 C 1.34221 * 125.74094 * 124.99860 * 5 4 3 7 7 C 1.38129 * 107.40805 * 179.97438 * 6 5 4 8 8 C 1.47285 * 126.42963 * 179.97438 * 7 6 5 9 9 O 1.21526 * 119.99823 * 359.97438 * 8 7 6 10 10 O 1.34752 * 119.99828 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99889 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47224 * 180.02562 * 11 10 8 13 13 O 1.42887 * 109.47115 * 65.00411 * 12 11 10 14 14 C 1.42902 * 114.00229 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47351 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00308 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00442 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99873 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47487 * 89.99576 * 19 17 15 21 21 H 1.48504 * 109.47140 * 210.00098 * 19 17 15 22 22 H 1.48508 * 109.46851 * 329.99821 * 19 17 15 23 23 C 1.41346 * 107.14425 * 359.97438 * 7 6 5 24 24 N 1.30429 * 108.01226 * 359.76280 * 23 7 6 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 32 32 H 1.07996 * 126.30135 * 359.96823 * 6 5 4 33 33 H 1.08995 * 109.47589 * 300.00442 * 11 10 8 34 34 H 1.09006 * 109.46811 * 60.00635 * 11 10 8 35 35 H 1.08999 * 109.47096 * 185.00719 * 12 11 10 36 36 H 1.09000 * 109.47215 * 305.00091 * 12 11 10 37 37 H 1.08993 * 109.47110 * 299.99885 * 14 13 12 38 38 H 1.09003 * 109.46768 * 60.00076 * 14 13 12 39 39 H 0.96999 * 120.00300 * 180.02562 * 18 17 15 40 40 H 1.07994 * 125.99294 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0215 2.9844 0.8924 7 6 5.3275 4.2836 0.5368 8 6 6.2622 5.1839 1.2333 9 8 6.8505 4.8000 2.2250 10 8 6.4649 6.4333 0.7710 11 6 7.3992 7.2654 1.5079 12 6 7.4976 8.6377 0.8386 13 8 6.2385 9.3062 0.9356 14 6 6.2221 10.6044 0.3386 15 6 4.8529 11.2135 0.4980 16 1 4.0733 10.6643 1.0050 17 6 4.5957 12.4722 -0.0023 18 7 3.4010 13.0040 0.1372 19 14 5.9444 13.4225 -0.8786 20 1 5.9080 13.1092 -2.3297 21 1 5.7322 14.8790 -0.6811 22 1 7.2652 13.0346 -0.3215 23 6 4.5755 4.5869 -0.6209 24 7 3.8735 3.5330 -0.9334 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.8575 0.6435 0.8891 31 1 3.8568 0.6439 -0.8908 32 1 5.4243 2.4402 1.7337 33 1 7.0485 7.3857 2.5328 34 1 8.3812 6.7921 1.5130 35 1 8.2635 9.2313 1.3377 36 1 7.7622 8.5118 -0.2112 37 1 6.9614 11.2386 0.8277 38 1 6.4604 10.5197 -0.7217 39 1 3.2200 13.8894 -0.2151 40 1 4.5835 5.5255 -1.1551 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869743448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:07 Heat of formation + Delta-G solvation = -121.014240 kcal Electronic energy + Delta-G solvation = -22859.621988 eV Core-core repulsion = 19062.191921 eV Total energy + Delta-G solvation = -3797.430067 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.54723 -41.00352 -39.01370 -38.73344 -37.27380 -35.04890 -34.86321 -32.04679 -31.52481 -30.43696 -29.46498 -27.33466 -25.21881 -24.37901 -23.98276 -23.24219 -21.81672 -21.40017 -19.17991 -19.07342 -18.07322 -17.85468 -17.56493 -17.36421 -16.96078 -16.56678 -16.45989 -16.33719 -16.15420 -15.64719 -15.16569 -14.91349 -14.57626 -14.42623 -14.27486 -13.95911 -13.77623 -13.32358 -13.08200 -12.97310 -12.76723 -12.62042 -12.39940 -12.30995 -12.06592 -11.83190 -11.65972 -11.42409 -11.31731 -10.91428 -10.80766 -10.72969 -10.36999 -9.94136 -8.35420 -6.43649 0.25832 0.93584 1.07546 1.35827 1.39363 1.49976 1.82338 2.13629 2.31580 2.69101 2.97230 3.00340 3.45994 3.70462 3.82358 3.83136 3.93476 3.99792 4.16705 4.18501 4.23497 4.41533 4.44072 4.46773 4.47379 4.56439 4.61664 4.65106 4.67699 4.80231 4.81926 5.03271 5.27960 5.44869 5.46489 5.67491 5.93717 5.98931 6.36643 6.60340 6.73181 6.81578 7.20586 8.81866 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.002558 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.593093 B =10945.421473 C =12188.340639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.131 3.869 5 N -0.353 5.353 6 C 0.162 3.838 7 C -0.307 4.307 8 C 0.545 3.455 9 O -0.547 6.547 10 O -0.355 6.355 11 C 0.076 3.924 12 C 0.050 3.950 13 O -0.407 6.407 14 C 0.178 3.822 15 C -0.546 4.546 16 H 0.027 0.973 17 C 0.010 3.990 18 N -0.944 5.944 19 Si 0.958 3.042 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.241 1.241 23 C 0.104 3.896 24 N -0.319 5.319 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.227 0.773 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.273 0.727 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 -26.888 -1.045 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.025 4.025 4 C 0.011 3.989 5 N -0.132 5.132 6 C 0.009 3.991 7 C -0.320 4.320 8 C 0.392 3.608 9 O -0.440 6.440 10 O -0.271 6.271 11 C 0.003 3.997 12 C -0.026 4.026 13 O -0.327 6.327 14 C 0.102 3.898 15 C -0.584 4.584 16 H 0.045 0.955 17 C -0.188 4.188 18 N -0.583 5.583 19 Si 0.779 3.221 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.164 1.164 23 C -0.084 4.084 24 N -0.139 5.139 25 H 0.125 0.875 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.128 0.872 32 H 0.243 0.757 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.082 0.918 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.060 -27.733 -1.544 27.944 hybrid contribution 0.483 1.557 0.310 1.660 sum 3.543 -26.176 -1.235 26.443 Atomic orbital electron populations 1.22972 0.78771 1.04340 1.00842 1.87739 1.21887 1.26740 1.95671 1.22568 0.92953 0.85382 1.01582 1.21827 0.92213 0.76927 1.07934 1.48613 1.32130 1.12760 1.19693 1.23417 0.89028 0.92787 0.93882 1.19426 1.11456 0.96222 1.04851 1.20217 0.79072 0.80264 0.81208 1.90783 1.49764 1.76655 1.26803 1.86618 1.60797 1.24453 1.55219 1.23235 0.92873 0.88198 0.95400 1.22767 0.87409 0.91086 1.01381 1.87926 1.33080 1.31691 1.79973 1.20362 0.95803 0.80889 0.92702 1.21176 0.96932 1.02005 1.38287 0.95496 1.25894 0.98746 0.97876 0.96251 1.70041 1.23446 1.17605 1.47256 0.85571 0.79502 0.77595 0.79426 1.18394 1.20039 1.16380 1.24447 0.91676 0.97966 0.94274 1.77230 1.24936 0.97421 1.14282 0.87520 0.93269 0.93510 0.92762 0.92682 0.83949 0.87160 0.75684 0.91377 0.87018 0.89069 0.91506 0.96361 0.96692 0.91833 0.78223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.40 -5.65 10.70 -148.98 -1.59 -7.24 16 3 C 0.05 0.73 6.12 71.98 0.44 1.17 16 4 C 0.13 1.42 6.86 86.38 0.59 2.01 16 5 N -0.35 -6.28 3.65 -346.26 -1.26 -7.54 16 6 C 0.16 2.91 11.25 84.30 0.95 3.86 16 7 C -0.31 -7.81 6.13 -20.16 -0.12 -7.94 16 8 C 0.55 16.62 7.95 70.20 0.56 17.18 16 9 O -0.55 -17.83 16.69 19.75 0.33 -17.50 16 10 O -0.35 -11.75 10.04 -53.96 -0.54 -12.29 16 11 C 0.08 2.26 5.85 71.98 0.42 2.68 16 12 C 0.05 1.62 6.33 71.98 0.46 2.07 16 13 O -0.41 -18.93 10.30 -145.57 -1.50 -20.43 16 14 C 0.18 8.84 4.76 71.24 0.34 9.18 16 15 C -0.55 -33.52 9.99 25.60 0.26 -33.27 16 16 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 17 C 0.01 0.59 5.47 84.65 0.46 1.06 16 18 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 19 Si 0.96 43.02 27.47 68.60 1.88 44.91 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 23 C 0.10 2.68 11.87 85.67 1.02 3.70 16 24 N -0.32 -7.73 12.33 -56.25 -0.69 -8.43 16 25 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.14 0.65 8.06 -2.39 -0.02 0.63 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.23 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 38 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 39 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 40 H 0.20 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -80.47 356.19 4.51 -75.96 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.97 Total: 8.92 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.62 Total: 3.21 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -1.66 Total: -75.53 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -3.31 Total: -57.47 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.91 kcal Total: -80.47 4.51 -75.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869743448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.054 kcal (2) G-P(sol) polarization free energy of solvation -80.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds