Wall clock time and date at job start Tue Mar 31 2020 04:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99776 * 2 1 4 4 H 1.48508 * 109.46904 * 269.99861 * 3 2 1 5 5 H 1.48496 * 109.47238 * 29.99791 * 3 2 1 6 6 H 1.48498 * 109.47310 * 150.00037 * 3 2 1 7 7 C 1.37876 * 120.00542 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99490 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46985 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47031 * 179.97438 * 10 9 7 12 12 C 1.34783 * 119.99698 * 179.72118 * 11 10 9 13 13 O 1.21585 * 119.99910 * 355.29662 * 12 11 10 14 14 N 1.34777 * 119.99674 * 175.29782 * 12 11 10 15 15 C 1.46937 * 120.64249 * 184.95187 * 14 12 11 16 16 C 1.52722 * 109.02576 * 233.62936 * 15 14 12 17 17 C 1.52983 * 109.42616 * 305.67028 * 16 15 14 18 18 C 1.52991 * 109.64414 * 61.06072 * 17 16 15 19 19 C 1.46932 * 120.64819 * 5.22376 * 14 12 11 20 20 C 1.53111 * 109.45833 * 181.15532 * 17 16 15 21 21 O 1.43078 * 109.15792 * 175.10416 * 20 17 16 22 22 C 1.43071 * 113.58360 * 302.10497 * 21 20 17 23 23 C 1.53137 * 109.15515 * 57.99181 * 22 21 20 24 24 O 1.42998 * 109.51005 * 300.90157 * 17 16 15 25 25 H 0.97001 * 120.00350 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47790 * 59.99585 * 9 7 2 27 27 H 1.08995 * 109.46935 * 299.99090 * 9 7 2 28 28 H 1.09005 * 109.46841 * 59.99633 * 10 9 7 29 29 H 1.09000 * 109.46747 * 299.99937 * 10 9 7 30 30 H 0.97001 * 120.00446 * 0.02562 * 11 10 9 31 31 H 1.09008 * 109.58549 * 353.46879 * 15 14 12 32 32 H 1.09002 * 109.58499 * 113.89066 * 15 14 12 33 33 H 1.08994 * 109.56099 * 185.61473 * 16 15 14 34 34 H 1.09006 * 109.35854 * 65.60232 * 16 15 14 35 35 H 1.08995 * 109.49264 * 178.83179 * 18 17 16 36 36 H 1.09008 * 109.49087 * 58.75847 * 18 17 16 37 37 H 1.09001 * 109.58495 * 246.10568 * 19 14 12 38 38 H 1.09005 * 109.58561 * 6.38530 * 19 14 12 39 39 H 1.08997 * 109.52364 * 295.01171 * 20 17 16 40 40 H 1.08996 * 109.52132 * 55.20074 * 20 17 16 41 41 H 1.08998 * 109.52423 * 298.08876 * 22 21 20 42 42 H 1.09003 * 109.57944 * 177.93110 * 22 21 20 43 43 H 1.09000 * 109.52300 * 184.76462 * 23 22 21 44 44 H 1.08997 * 109.52650 * 64.56778 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9307 0.0012 12 6 2.1870 -6.0979 -0.0044 13 8 3.3993 -6.0994 -0.0963 14 7 1.5169 -7.2634 0.0918 15 6 2.2415 -8.5374 0.1961 16 6 1.7414 -9.4851 -0.8921 17 6 0.2204 -9.6160 -0.7932 18 6 -0.4285 -8.2468 -1.0047 19 6 0.0478 -7.2852 0.0885 20 6 -0.2786 -10.5884 -1.8655 21 8 -1.6841 -10.7944 -1.6950 22 6 -2.0362 -11.2979 -0.4029 23 6 -1.5384 -10.3239 0.6687 24 8 -0.1327 -10.1171 0.4987 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6243 -2.5567 0.8903 28 1 2.8721 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 0.5430 -4.9308 0.0011 31 1 3.3093 -8.3624 0.0638 32 1 2.0605 -8.9817 1.1749 33 1 2.2002 -10.4651 -0.7616 34 1 2.0093 -9.0855 -1.8703 35 1 -1.5127 -8.3465 -0.9543 36 1 -0.1438 -7.8564 -1.9818 37 1 -0.3148 -7.6259 1.0584 38 1 -0.3321 -6.2834 -0.1122 39 1 -0.0891 -10.1694 -2.8537 40 1 0.2438 -11.5398 -1.7660 41 1 -1.5722 -12.2727 -0.2529 42 1 -3.1196 -11.3954 -0.3316 43 1 -1.7281 -10.7418 1.6574 44 1 -2.0612 -9.3728 0.5678 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883564278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:19 Heat of formation + Delta-G solvation = -117.661435 kcal Electronic energy + Delta-G solvation = -25124.943050 eV Core-core repulsion = 21463.491466 eV Total energy + Delta-G solvation = -3661.451584 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12995 -39.61227 -37.16726 -35.81325 -34.84622 -33.31164 -32.66257 -31.28917 -29.98814 -29.18953 -27.29210 -24.95228 -24.14700 -23.71045 -22.36743 -21.00868 -20.29615 -19.36282 -18.06465 -17.12678 -16.73114 -16.43960 -15.95298 -15.79699 -15.51927 -15.48282 -15.31801 -14.49888 -14.12179 -14.03260 -13.85847 -13.59751 -13.22764 -13.06953 -12.77362 -12.51786 -12.36806 -12.27176 -12.12701 -11.45949 -11.43981 -11.16525 -11.10113 -11.01589 -10.92953 -10.61330 -10.33203 -10.29519 -9.84541 -9.52052 -9.42580 -9.24216 -8.68294 -8.43820 -8.14501 -6.07745 -4.10214 2.93600 3.28543 3.30822 3.36113 3.36861 3.41546 3.57871 4.13274 4.24499 4.35734 4.42604 4.49412 4.57513 4.68747 4.81688 4.87785 5.03362 5.13396 5.15969 5.21917 5.28217 5.29393 5.33193 5.41988 5.45695 5.57841 5.67803 5.80202 5.83194 6.03702 6.30296 6.42781 6.60647 6.64391 6.76971 6.79962 7.03648 7.23052 7.57855 7.65137 7.91532 8.27086 8.40718 8.94462 9.01878 9.54450 11.03963 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.002861 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.589172 B = 9785.754197 C =10343.535610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.739 5.739 12 C 0.703 3.297 13 O -0.597 6.597 14 N -0.633 5.633 15 C 0.136 3.864 16 C -0.119 4.119 17 C 0.086 3.914 18 C -0.155 4.155 19 C 0.118 3.882 20 C 0.038 3.962 21 O -0.377 6.377 22 C 0.024 3.976 23 C 0.021 3.979 24 O -0.364 6.364 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.392 0.608 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 -24.857 -0.888 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.395 5.395 12 C 0.404 3.596 13 O -0.476 6.476 14 N -0.372 5.372 15 C 0.013 3.987 16 C -0.157 4.157 17 C 0.046 3.954 18 C -0.193 4.193 19 C -0.005 4.005 20 C -0.039 4.039 21 O -0.295 6.295 22 C -0.053 4.053 23 C -0.056 4.056 24 O -0.283 6.283 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.227 0.773 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.663 -24.679 -0.925 25.132 hybrid contribution -0.310 0.870 -0.002 0.923 sum -4.974 -23.809 -0.927 24.341 Atomic orbital electron populations 1.69956 1.06086 1.26830 1.50516 1.24995 0.94892 0.99393 0.95026 0.86511 0.79849 0.82999 0.78187 1.20570 1.21193 1.19717 1.21054 0.93281 0.90351 1.51171 0.92207 1.19319 0.94257 0.91121 0.97730 1.21593 0.95655 0.80485 1.00630 1.45714 1.09862 1.05355 1.78551 1.15964 0.85322 0.80427 0.77853 1.90867 1.12048 1.86214 1.58457 1.47246 1.05716 1.05473 1.78780 1.21166 0.97707 0.81870 0.97973 1.21827 0.91890 1.00916 1.01095 1.22056 0.96173 0.92896 0.84224 1.22416 1.01408 0.94892 1.00597 1.21468 0.80571 0.99681 0.98821 1.23254 0.82175 0.98707 0.99767 1.88100 1.23160 1.85863 1.32401 1.23245 1.01585 0.96734 0.83772 1.23255 0.83052 0.99485 0.99837 1.88134 1.22557 1.85368 1.32221 0.92881 0.96045 0.96016 0.92857 0.92741 0.77276 0.88717 0.91305 0.89921 0.89772 0.89842 0.90094 0.91217 0.90031 0.87755 0.92068 0.92290 0.87879 0.87838 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.07 5.62 -4.04 -0.02 3.05 16 11 N -0.74 -13.74 5.47 -65.22 -0.36 -14.09 16 12 C 0.70 12.97 8.30 -86.91 -0.72 12.25 16 13 O -0.60 -13.17 15.77 5.29 0.08 -13.09 16 14 N -0.63 -8.93 2.98 -178.77 -0.53 -9.46 16 15 C 0.14 1.65 6.18 -3.95 -0.02 1.63 16 16 C -0.12 -1.11 5.09 -26.88 -0.14 -1.24 16 17 C 0.09 0.78 0.68 -90.58 -0.06 0.72 16 18 C -0.15 -1.49 4.45 -26.64 -0.12 -1.61 16 19 C 0.12 1.34 6.16 -3.71 -0.02 1.32 16 20 C 0.04 0.31 5.72 37.21 0.21 0.52 16 21 O -0.38 -3.46 10.33 -48.78 -0.50 -3.96 16 22 C 0.02 0.16 7.05 37.23 0.26 0.42 16 23 C 0.02 0.15 6.64 37.23 0.25 0.40 16 24 O -0.36 -3.45 9.07 -48.78 -0.44 -3.90 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.39 6.40 5.96 -40.82 -0.24 6.16 16 31 H 0.09 1.29 7.00 -51.92 -0.36 0.93 16 32 H 0.07 0.81 7.82 -51.93 -0.41 0.40 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.75 6.28 -51.93 -0.33 0.42 16 36 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 38 H 0.08 0.92 5.64 -51.93 -0.29 0.63 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.47 6.56 -51.93 -0.34 0.12 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -33.29 344.14 -8.78 -42.08 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.99 Total: 1.94 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.94 Total: 4.31 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.15 Total: -49.08 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.86 Total: -20.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.29 -8.78 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883564278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.584 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds