Wall clock time and date at job start Tue Mar 31 2020 04:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99776 * 2 1 4 4 H 1.48508 * 109.46904 * 269.99861 * 3 2 1 5 5 H 1.48496 * 109.47238 * 29.99791 * 3 2 1 6 6 H 1.48498 * 109.47310 * 150.00037 * 3 2 1 7 7 C 1.37876 * 120.00542 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99490 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46985 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47031 * 179.97438 * 10 9 7 12 12 C 1.34783 * 119.99698 * 179.72118 * 11 10 9 13 13 O 1.21585 * 119.99910 * 355.29662 * 12 11 10 14 14 N 1.34777 * 119.99674 * 175.29782 * 12 11 10 15 15 C 1.46937 * 120.64249 * 184.95187 * 14 12 11 16 16 C 1.52722 * 109.02576 * 233.62936 * 15 14 12 17 17 C 1.52983 * 109.42616 * 305.67028 * 16 15 14 18 18 C 1.52991 * 109.64414 * 61.06072 * 17 16 15 19 19 C 1.46932 * 120.64819 * 5.22376 * 14 12 11 20 20 C 1.53111 * 109.45833 * 181.15532 * 17 16 15 21 21 O 1.43078 * 109.15792 * 175.10416 * 20 17 16 22 22 C 1.43071 * 113.58360 * 302.10497 * 21 20 17 23 23 C 1.53137 * 109.15515 * 57.99181 * 22 21 20 24 24 O 1.42998 * 109.51005 * 300.90157 * 17 16 15 25 25 H 0.97001 * 120.00350 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47790 * 59.99585 * 9 7 2 27 27 H 1.08995 * 109.46935 * 299.99090 * 9 7 2 28 28 H 1.09005 * 109.46841 * 59.99633 * 10 9 7 29 29 H 1.09000 * 109.46747 * 299.99937 * 10 9 7 30 30 H 0.97001 * 120.00446 * 0.02562 * 11 10 9 31 31 H 1.09008 * 109.58549 * 353.46879 * 15 14 12 32 32 H 1.09002 * 109.58499 * 113.89066 * 15 14 12 33 33 H 1.08994 * 109.56099 * 185.61473 * 16 15 14 34 34 H 1.09006 * 109.35854 * 65.60232 * 16 15 14 35 35 H 1.08995 * 109.49264 * 178.83179 * 18 17 16 36 36 H 1.09008 * 109.49087 * 58.75847 * 18 17 16 37 37 H 1.09001 * 109.58495 * 246.10568 * 19 14 12 38 38 H 1.09005 * 109.58561 * 6.38530 * 19 14 12 39 39 H 1.08997 * 109.52364 * 295.01171 * 20 17 16 40 40 H 1.08996 * 109.52132 * 55.20074 * 20 17 16 41 41 H 1.08998 * 109.52423 * 298.08876 * 22 21 20 42 42 H 1.09003 * 109.57944 * 177.93110 * 22 21 20 43 43 H 1.09000 * 109.52300 * 184.76462 * 23 22 21 44 44 H 1.08997 * 109.52650 * 64.56778 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9307 0.0012 12 6 2.1870 -6.0979 -0.0044 13 8 3.3993 -6.0994 -0.0963 14 7 1.5169 -7.2634 0.0918 15 6 2.2415 -8.5374 0.1961 16 6 1.7414 -9.4851 -0.8921 17 6 0.2204 -9.6160 -0.7932 18 6 -0.4285 -8.2468 -1.0047 19 6 0.0478 -7.2852 0.0885 20 6 -0.2786 -10.5884 -1.8655 21 8 -1.6841 -10.7944 -1.6950 22 6 -2.0362 -11.2979 -0.4029 23 6 -1.5384 -10.3239 0.6687 24 8 -0.1327 -10.1171 0.4987 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6243 -2.5567 0.8903 28 1 2.8721 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 0.5430 -4.9308 0.0011 31 1 3.3093 -8.3624 0.0638 32 1 2.0605 -8.9817 1.1749 33 1 2.2002 -10.4651 -0.7616 34 1 2.0093 -9.0855 -1.8703 35 1 -1.5127 -8.3465 -0.9543 36 1 -0.1438 -7.8564 -1.9818 37 1 -0.3148 -7.6259 1.0584 38 1 -0.3321 -6.2834 -0.1122 39 1 -0.0891 -10.1694 -2.8537 40 1 0.2438 -11.5398 -1.7660 41 1 -1.5722 -12.2727 -0.2529 42 1 -3.1196 -11.3954 -0.3316 43 1 -1.7281 -10.7418 1.6574 44 1 -2.0612 -9.3728 0.5678 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883564278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:19 Heat of formation + Delta-G solvation = -140.485056 kcal Electronic energy + Delta-G solvation = -25125.932757 eV Core-core repulsion = 21463.491466 eV Total energy + Delta-G solvation = -3662.441291 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97343 -40.82737 -38.11736 -36.72945 -36.49618 -34.92721 -33.96106 -32.27632 -31.40941 -30.25774 -28.17430 -26.65988 -25.08315 -24.61756 -23.43918 -22.72776 -21.32505 -20.45163 -19.29606 -18.50027 -17.75876 -17.44834 -17.17828 -16.74920 -16.57631 -16.47377 -16.25272 -16.14325 -15.51465 -15.30084 -15.07067 -14.50375 -14.44540 -14.27564 -14.03852 -13.73008 -13.32347 -13.24074 -13.14378 -12.92762 -12.78928 -12.52399 -12.28242 -12.24747 -12.12217 -11.97489 -11.65873 -11.55606 -11.45489 -11.14990 -11.00643 -10.60350 -10.22174 -10.03770 -9.46630 -8.23809 -6.34145 1.42136 1.42860 1.54064 1.65902 2.10638 2.41018 2.65415 2.80594 2.97329 3.10954 3.47557 3.60971 3.69752 3.95414 4.03517 4.16577 4.22335 4.28141 4.38683 4.42146 4.44324 4.51426 4.55316 4.59314 4.62959 4.76705 4.77565 4.83489 4.84907 4.87572 4.94354 5.04319 5.20138 5.30362 5.48639 5.56131 5.58444 5.78755 5.93667 6.04852 6.13480 6.17105 6.78659 6.96348 7.35101 7.54049 8.88188 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.002861 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.589172 B = 9785.754197 C =10343.535610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.735 5.735 12 C 0.700 3.300 13 O -0.637 6.637 14 N -0.624 5.624 15 C 0.133 3.867 16 C -0.112 4.112 17 C 0.089 3.911 18 C -0.149 4.149 19 C 0.115 3.885 20 C 0.040 3.960 21 O -0.394 6.394 22 C 0.022 3.978 23 C 0.016 3.984 24 O -0.378 6.378 25 H 0.266 0.734 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.403 0.597 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.977 -25.837 -0.920 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.036 3.964 11 N -0.392 5.392 12 C 0.401 3.599 13 O -0.519 6.519 14 N -0.362 5.362 15 C 0.011 3.989 16 C -0.150 4.150 17 C 0.049 3.951 18 C -0.188 4.188 19 C -0.008 4.008 20 C -0.037 4.037 21 O -0.313 6.313 22 C -0.055 4.055 23 C -0.060 4.060 24 O -0.297 6.297 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.241 0.759 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.256 -25.712 -0.955 26.261 hybrid contribution -0.207 1.088 0.050 1.108 sum -5.463 -24.624 -0.905 25.239 Atomic orbital electron populations 1.70056 1.07523 1.28007 1.50993 1.25868 0.95807 1.03068 0.94377 0.85439 0.78621 0.78413 0.78534 1.19743 1.20453 1.19093 1.21454 0.93606 0.91853 1.51570 0.92291 1.19115 0.94189 0.91666 0.96257 1.21089 0.94655 0.81105 0.99580 1.45432 1.10299 1.04563 1.78904 1.16077 0.84895 0.81220 0.77685 1.90835 1.13873 1.86925 1.60257 1.47299 1.06991 1.04689 1.77171 1.21303 0.96690 0.81371 0.99553 1.21778 0.92437 1.00999 0.99827 1.22001 0.95628 0.92703 0.84750 1.22371 1.02006 0.94864 0.99510 1.21655 0.78610 1.00321 1.00167 1.23262 0.81991 0.98855 0.99605 1.88079 1.23542 1.86066 1.33643 1.23393 1.02734 0.96689 0.82678 1.23430 0.81869 0.99735 1.00971 1.88112 1.23991 1.85371 1.32266 0.92521 0.97401 0.97360 0.93857 0.93831 0.75930 0.90530 0.90638 0.87899 0.89780 0.88853 0.90471 0.90244 0.90203 0.87147 0.91116 0.91721 0.86173 0.86123 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.29 21.45 0.28 -54.23 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.30 5.09 29.85 0.15 1.45 16 10 C 0.16 7.21 5.62 86.38 0.49 7.69 16 11 N -0.74 -27.61 5.47 -478.52 -2.62 -30.23 16 12 C 0.70 26.01 8.30 179.05 1.49 27.50 16 13 O -0.64 -28.63 15.77 -3.98 -0.06 -28.70 16 14 N -0.62 -17.28 2.98 -837.75 -2.50 -19.77 16 15 C 0.13 3.14 6.18 86.20 0.53 3.68 16 16 C -0.11 -1.91 5.09 30.50 0.16 -1.75 16 17 C 0.09 1.43 0.68 -10.77 -0.01 1.42 16 18 C -0.15 -2.63 4.45 30.65 0.14 -2.50 16 19 C 0.12 2.47 6.16 86.36 0.53 3.01 16 20 C 0.04 0.56 5.72 72.02 0.41 0.97 16 21 O -0.39 -6.35 10.33 -136.02 -1.41 -7.76 16 22 C 0.02 0.24 7.05 72.03 0.51 0.75 16 23 C 0.02 0.20 6.64 72.03 0.48 0.67 16 24 O -0.38 -6.32 9.07 -136.02 -1.23 -7.56 16 25 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.40 13.20 5.96 -92.71 -0.55 12.64 16 31 H 0.08 2.11 7.00 -2.38 -0.02 2.09 16 32 H 0.08 1.69 7.82 -2.39 -0.02 1.67 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.09 1.50 6.28 -2.39 -0.02 1.48 16 36 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.08 1.59 7.82 -2.39 -0.02 1.57 16 38 H 0.08 1.74 5.64 -2.38 -0.01 1.72 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 0.77 6.56 -2.39 -0.02 0.76 16 Total: -1.00 -70.88 344.14 0.51 -70.37 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.44 Total: 18.86 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.56 Total: 13.07 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -4.83 Total: -104.23 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -2.70 Total: -44.01 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.88 0.51 -70.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883564278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.112 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds