Wall clock time and date at job start Tue Mar 31 2020 04:06:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86796 * 120.00004 * 2 1
4 4 H 1.48505 * 109.47291 * 270.00573 * 3 2 1
5 5 H 1.48504 * 109.47007 * 30.00178 * 3 2 1
6 6 H 1.48501 * 109.47027 * 150.00209 * 3 2 1
7 7 C 1.37878 * 119.99904 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99669 * 179.97438 * 7 2 1
9 9 C 1.50695 * 119.99922 * 359.97438 * 7 2 1
10 10 N 1.46506 * 109.47207 * 180.02562 * 9 7 2
11 11 C 1.34774 * 120.00305 * 180.02562 * 10 9 7
12 12 O 1.21589 * 119.99703 * 5.26452 * 11 10 9
13 13 N 1.34776 * 120.00084 * 184.99036 * 11 10 9
14 14 C 1.47151 * 120.98093 * 354.68305 * 13 11 10
15 15 C 1.53713 * 108.16169 * 129.43648 * 14 13 11
16 16 O 1.42956 * 109.14838 * 52.53346 * 15 14 13
17 17 C 1.42959 * 114.17147 * 297.29122 * 16 15 14
18 18 C 1.47149 * 120.98463 * 174.96580 * 13 11 10
19 19 H 1.09002 * 109.68189 * 110.74302 * 18 13 11
20 20 C 1.53005 * 109.67956 * 350.23619 * 18 13 11
21 21 C 1.53004 * 109.47024 * 182.29509 * 20 18 13
22 22 H 1.09000 * 110.27205 * 58.23312 * 21 20 18
23 23 C 1.54943 * 110.30827 * 180.42187 * 21 20 18
24 24 C 1.55303 * 100.94067 * 155.36219 * 23 21 20
25 25 C 1.54377 * 102.25355 * 325.86881 * 24 23 21
26 26 O 1.43241 * 107.59037 * 21.35708 * 25 24 23
27 27 H 0.97001 * 120.00199 * 359.97438 * 1 2 3
28 28 H 1.09003 * 109.47353 * 60.00683 * 9 7 2
29 29 H 1.08998 * 109.47566 * 300.00086 * 9 7 2
30 30 H 0.97000 * 119.99429 * 0.02562 * 10 9 7
31 31 H 1.09001 * 109.68211 * 249.21477 * 14 13 11
32 32 H 1.08998 * 109.68041 * 9.76295 * 14 13 11
33 33 H 1.09002 * 109.65121 * 292.56828 * 15 14 13
34 34 H 1.09003 * 109.48260 * 172.40037 * 15 14 13
35 35 H 1.09003 * 109.50929 * 302.66132 * 17 16 15
36 36 H 1.08999 * 109.51659 * 182.50278 * 17 16 15
37 37 H 1.08997 * 109.46843 * 302.29624 * 20 18 13
38 38 H 1.09001 * 109.47233 * 62.29579 * 20 18 13
39 39 H 1.08998 * 111.12832 * 273.28467 * 23 21 20
40 40 H 1.09001 * 111.12747 * 37.44685 * 23 21 20
41 41 H 1.09004 * 110.85184 * 207.67861 * 24 23 21
42 42 H 1.09002 * 110.85187 * 84.05944 * 24 23 21
43 43 H 1.08998 * 109.83109 * 261.83946 * 25 24 23
44 44 H 1.09001 * 109.90746 * 140.91437 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 7 2.2030 -3.6127 -0.0005
11 6 1.7538 -4.8834 -0.0011
12 8 0.5625 -5.1069 -0.0981
13 7 2.6254 -5.9063 0.1005
14 6 4.0774 -5.6676 0.0963
15 6 4.6871 -6.4013 1.3015
16 8 4.2689 -7.7682 1.2790
17 6 2.8567 -7.9504 1.4068
18 6 2.1532 -7.2955 0.2126
19 1 2.3946 -7.8401 -0.7003
20 6 0.6396 -7.3089 0.4355
21 6 0.1623 -8.7523 0.6084
22 1 0.6757 -9.2218 1.4475
23 6 -1.3715 -8.7892 0.8251
24 6 -1.7041 -10.2244 0.3337
25 6 -0.6848 -10.4242 -0.8084
26 8 0.3891 -9.5002 -0.5967
27 1 -0.4850 0.8400 0.0004
28 1 0.6241 -2.5567 -0.8904
29 1 0.6247 -2.5571 0.8896
30 1 3.1566 -3.4354 -0.0002
31 1 4.5098 -6.0512 -0.8278
32 1 4.2738 -4.5985 0.1780
33 1 4.3490 -5.9323 2.2256
34 1 5.7745 -6.3522 1.2449
35 1 2.5120 -7.4870 2.3312
36 1 2.6272 -9.0158 1.4250
37 1 0.3992 -6.7368 1.3316
38 1 0.1416 -6.8622 -0.4252
39 1 -1.6225 -8.6665 1.8786
40 1 -1.8728 -8.0387 0.2138
41 1 -2.7252 -10.2784 -0.0438
42 1 -1.5441 -10.9533 1.1283
43 1 -1.1611 -10.2240 -1.7682
44 1 -0.3032 -11.4450 -0.7909
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000894482979.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:06:25
Heat of formation + Delta-G solvation = -103.939614 kcal
Electronic energy + Delta-G solvation = -25404.307077 eV
Core-core repulsion = 21743.450515 eV
Total energy + Delta-G solvation = -3660.856562 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.48659 -39.26301 -38.08407 -34.90005 -34.31533 -33.29066 -32.17649 -31.95420
-29.83997 -28.00379 -26.62626 -25.78484 -23.45163 -22.78600 -21.86598 -21.52973
-20.60090 -19.26453 -17.80945 -17.04037 -16.44826 -16.12712 -15.94843 -15.57159
-15.36763 -15.07783 -14.78037 -14.64772 -14.58061 -13.75919 -13.60568 -13.39574
-13.16653 -12.75954 -12.47575 -12.14856 -11.93059 -11.84535 -11.76250 -11.65312
-11.40864 -11.08834 -10.97062 -10.90250 -10.88267 -10.79988 -10.48965 -10.26713
-10.10281 -9.62739 -9.37701 -8.73406 -8.62859 -8.26862 -7.73216 -6.16639
-4.23188 3.04876 3.23873 3.30259 3.32531 3.75949 3.79934 3.87253
4.29553 4.43733 4.56943 4.71855 4.76660 4.84426 5.01212 5.05979
5.07357 5.13383 5.19526 5.22568 5.25572 5.45547 5.48652 5.55936
5.59385 5.61948 5.72272 5.74628 5.77236 5.83258 5.89539 6.07701
6.38314 6.56840 6.89570 7.03202 7.08212 7.11771 7.50505 7.54331
7.56232 7.83752 8.00997 8.74279 8.88119 9.31029 9.46506 10.93543
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.018001 B = 0.003771 C = 0.003221
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1555.127619 B = 7422.784192 C = 8691.033667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.064 3.936
3 Si 0.903 3.097
4 H -0.279 1.279
5 H -0.284 1.284
6 H -0.273 1.273
7 C -0.542 4.542
8 H 0.061 0.939
9 C 0.267 3.733
10 N -0.730 5.730
11 C 0.699 3.301
12 O -0.590 6.590
13 N -0.641 5.641
14 C 0.079 3.921
15 C 0.048 3.952
16 O -0.381 6.381
17 C 0.050 3.950
18 C 0.139 3.861
19 H 0.080 0.920
20 C -0.108 4.108
21 C 0.071 3.929
22 H 0.064 0.936
23 C -0.149 4.149
24 C -0.157 4.157
25 C 0.051 3.949
26 O -0.378 6.378
27 H 0.266 0.734
28 H 0.026 0.974
29 H 0.023 0.977
30 H 0.384 0.616
31 H 0.073 0.927
32 H 0.090 0.910
33 H 0.056 0.944
34 H 0.103 0.897
35 H 0.053 0.947
36 H 0.103 0.897
37 H 0.082 0.918
38 H 0.114 0.886
39 H 0.081 0.919
40 H 0.084 0.916
41 H 0.079 0.921
42 H 0.073 0.927
43 H 0.066 0.934
44 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.988 -18.980 2.789 19.594
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.140 4.140
3 Si 0.731 3.269
4 H -0.205 1.205
5 H -0.210 1.210
6 H -0.198 1.198
7 C -0.580 4.580
8 H 0.079 0.921
9 C 0.146 3.854
10 N -0.384 5.384
11 C 0.401 3.599
12 O -0.469 6.469
13 N -0.381 5.381
14 C -0.046 4.046
15 C -0.030 4.030
16 O -0.300 6.300
17 C -0.028 4.028
18 C 0.035 3.965
19 H 0.098 0.902
20 C -0.145 4.145
21 C 0.014 3.986
22 H 0.082 0.918
23 C -0.187 4.187
24 C -0.194 4.194
25 C -0.026 4.026
26 O -0.298 6.298
27 H 0.075 0.925
28 H 0.044 0.956
29 H 0.041 0.959
30 H 0.219 0.781
31 H 0.091 0.909
32 H 0.109 0.891
33 H 0.075 0.925
34 H 0.121 0.879
35 H 0.072 0.928
36 H 0.121 0.879
37 H 0.100 0.900
38 H 0.132 0.868
39 H 0.099 0.901
40 H 0.103 0.897
41 H 0.098 0.902
42 H 0.092 0.908
43 H 0.084 0.916
44 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 3.217 -19.068 2.582 19.509
hybrid contribution 0.559 1.225 0.160 1.356
sum 3.775 -17.843 2.742 18.443
Atomic orbital electron populations
1.69975 1.06079 1.27261 1.48935 1.24935 0.94908 0.99373 0.94742
0.86422 0.79604 0.82685 0.78227 1.20461 1.21011 1.19779 1.21211
0.93207 0.90475 1.53153 0.92066 1.18974 0.87782 0.81068 0.97558
1.45967 1.10805 1.04523 1.77089 1.16079 0.84810 0.80847 0.78171
1.90833 1.14556 1.82884 1.58658 1.47425 1.05114 1.05839 1.79747
1.22341 0.81486 1.01436 0.99303 1.23051 0.99897 0.82735 0.97339
1.87925 1.22573 1.25096 1.94375 1.23181 0.81006 1.01388 0.97210
1.21601 0.95138 0.81151 0.98611 0.90221 1.22320 0.93497 0.92156
1.06540 1.23316 0.94950 0.93234 0.87129 0.91781 1.23266 0.95973
0.96795 1.02639 1.23118 1.00218 0.97516 0.98592 1.23066 0.87891
0.93284 0.98331 1.88434 1.44597 1.53235 1.43518 0.92468 0.95637
0.95869 0.78138 0.90897 0.89142 0.92529 0.87915 0.92833 0.87945
0.89970 0.86785 0.90054 0.89709 0.90195 0.90822 0.91558 0.91839
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16
2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16
4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
7 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16
8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16
9 C 0.27 7.10 5.43 -5.19 -0.03 7.07 16
10 N -0.73 -15.72 5.46 -66.41 -0.36 -16.08 16
11 C 0.70 14.47 8.13 -86.92 -0.71 13.76 16
12 O -0.59 -13.86 12.10 5.29 0.06 -13.80 16
13 N -0.64 -10.48 3.01 -170.18 -0.51 -10.99 16
14 C 0.08 1.01 6.66 -3.32 -0.02 0.99 16
15 C 0.05 0.54 7.00 37.53 0.26 0.80 16
16 O -0.38 -4.98 10.74 -35.23 -0.38 -5.36 16
17 C 0.05 0.63 5.66 37.31 0.21 0.84 16
18 C 0.14 2.06 3.09 -67.42 -0.21 1.85 16
19 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16
20 C -0.11 -1.65 2.97 -26.73 -0.08 -1.73 16
21 C 0.07 0.88 3.10 -25.70 -0.08 0.80 16
22 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16
23 C -0.15 -1.62 6.57 -24.48 -0.16 -1.78 16
24 C -0.16 -1.38 7.02 -24.79 -0.17 -1.55 16
25 C 0.05 0.52 7.79 37.88 0.30 0.81 16
26 O -0.38 -5.04 10.62 -35.23 -0.37 -5.41 16
27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
29 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16
30 H 0.38 7.20 5.83 -40.82 -0.24 6.96 16
31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
32 H 0.09 1.11 5.66 -51.93 -0.29 0.81 16
33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16
35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.10 1.13 6.86 -51.93 -0.36 0.77 16
37 H 0.08 1.37 7.43 -51.93 -0.39 0.98 16
38 H 0.11 2.15 6.11 -51.93 -0.32 1.83 16
39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
40 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16
41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16
43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
LS Contribution 344.13 15.07 5.19 5.19
Total: -1.00 -32.12 344.13 -8.72 -40.84
By element:
Atomic # 1 Polarization: 13.52 SS G_CDS: -6.94 Total: 6.57 kcal
Atomic # 6 Polarization: 9.64 SS G_CDS: -1.11 Total: 8.54 kcal
Atomic # 7 Polarization: -52.17 SS G_CDS: -0.14 Total: -52.31 kcal
Atomic # 8 Polarization: -23.88 SS G_CDS: -0.69 Total: -24.57 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -32.12 -8.72 -40.84 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000894482979.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.102 kcal
(2) G-P(sol) polarization free energy of solvation -32.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.225 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.940 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds