Wall clock time and date at job start Tue Mar 31 2020 04:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00052 * 2 1 4 4 H 1.48504 * 109.46802 * 269.99607 * 3 2 1 5 5 H 1.48500 * 109.47179 * 29.99595 * 3 2 1 6 6 H 1.48499 * 109.47289 * 150.00022 * 3 2 1 7 7 C 1.37880 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47000 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47403 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99704 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00336 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00061 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47323 * 180.02562 * 14 13 11 16 16 N 1.46906 * 109.47474 * 180.02562 * 15 14 13 17 17 C 1.48575 * 110.99932 * 52.58048 * 16 15 14 18 18 C 1.55050 * 103.28219 * 159.44491 * 17 16 15 19 19 C 1.54109 * 102.80377 * 322.97277 * 18 17 16 20 20 C 1.48031 * 111.00033 * 169.99719 * 16 15 14 21 21 O 1.43184 * 110.13583 * 141.04475 * 19 18 17 22 22 C 1.44930 * 104.64234 * 97.63894 * 21 19 18 23 23 C 1.54955 * 101.80606 * 35.54081 * 22 21 19 24 24 O 1.42817 * 110.33062 * 262.01843 * 19 18 17 25 25 H 0.96998 * 119.99785 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46555 * 60.00074 * 9 7 2 27 27 H 1.09001 * 109.47034 * 300.00091 * 9 7 2 28 28 H 1.09005 * 109.47169 * 59.99868 * 10 9 7 29 29 H 1.09000 * 109.47229 * 300.00482 * 10 9 7 30 30 H 0.97002 * 120.00013 * 359.97438 * 13 11 10 31 31 H 1.09005 * 109.47300 * 59.99506 * 14 13 11 32 32 H 1.09000 * 109.47362 * 299.99958 * 14 13 11 33 33 H 1.08998 * 109.47595 * 59.99771 * 15 14 13 34 34 H 1.09001 * 109.46945 * 299.99709 * 15 14 13 35 35 H 1.09002 * 110.65942 * 40.99305 * 17 16 15 36 36 H 1.09006 * 110.66113 * 277.89198 * 17 16 15 37 37 H 1.09002 * 110.74179 * 204.64751 * 18 17 16 38 38 H 1.08993 * 110.90320 * 81.37740 * 18 17 16 39 39 H 1.09003 * 109.98188 * 94.90119 * 20 16 15 40 40 H 1.08999 * 109.98305 * 333.61213 * 20 16 15 41 41 H 1.09000 * 110.95773 * 277.40993 * 22 21 19 42 42 H 1.09004 * 110.96154 * 153.67195 * 22 21 19 43 43 H 1.09006 * 110.69044 * 206.36386 * 23 22 21 44 44 H 1.08993 * 110.69193 * 83.16626 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2790 -4.9672 0.0030 13 7 2.1657 -6.1344 0.0024 14 6 1.4332 -7.4031 0.0035 15 6 2.4274 -8.5660 0.0044 16 7 1.6929 -9.8382 0.0049 17 6 0.6970 -9.8785 -1.0970 18 6 0.4296 -11.3948 -1.2802 19 6 1.8195 -12.0176 -1.0449 20 6 2.6064 -10.9783 -0.2343 21 8 1.6940 -13.2387 -0.3078 22 6 1.7317 -14.2801 -1.3149 23 6 2.7373 -13.6951 -2.3385 24 8 2.4640 -12.2784 -2.2924 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5574 -0.8881 27 1 0.6247 -2.5563 0.8920 28 1 2.8726 -3.6039 0.8909 29 1 2.8713 -3.6047 -0.8890 30 1 3.1357 -6.1344 0.0020 31 1 0.8060 -7.4613 -0.8862 32 1 0.8069 -7.4603 0.8938 33 1 3.0541 -8.5076 0.8942 34 1 3.0539 -8.5090 -0.8857 35 1 1.1138 -9.4487 -2.0079 36 1 -0.2169 -9.3590 -0.8087 37 1 0.0781 -11.6055 -2.2903 38 1 -0.2854 -11.7556 -0.5410 39 1 2.9218 -11.4085 0.7162 40 1 3.4767 -10.6459 -0.8001 41 1 0.7504 -14.4197 -1.7684 42 1 2.1022 -15.2154 -0.8951 43 1 2.5466 -14.0919 -3.3357 44 1 3.7628 -13.8997 -2.0310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899060988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:00 Heat of formation + Delta-G solvation = -122.030798 kcal Electronic energy + Delta-G solvation = -23794.680244 eV Core-core repulsion = 20133.039190 eV Total energy + Delta-G solvation = -3661.641054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33296 -39.24716 -38.25047 -35.55861 -34.77924 -33.41572 -32.09989 -30.92823 -30.11570 -28.90371 -26.86149 -25.41061 -23.88019 -23.38264 -21.64068 -21.30285 -20.91631 -19.57120 -17.61965 -17.29981 -16.82869 -16.62040 -16.13060 -15.66783 -15.58768 -15.33983 -14.75416 -14.57058 -14.37301 -14.32151 -13.86867 -13.61804 -13.24396 -13.07363 -12.92856 -12.84011 -12.31602 -12.16623 -12.09284 -11.78492 -11.68222 -11.53021 -11.31175 -11.13207 -10.90673 -10.69900 -10.57845 -10.08085 -9.92772 -9.63966 -9.16424 -9.00233 -8.82380 -8.74743 -8.29634 -5.93763 -3.98110 2.90227 3.11219 3.29590 3.34938 3.40776 3.43460 3.50437 3.89263 4.00103 4.14044 4.22391 4.39326 4.49716 4.56088 4.70401 4.81006 4.89571 4.91607 4.97972 5.12201 5.18622 5.24218 5.27914 5.41018 5.42907 5.46736 5.58006 5.59171 5.65074 5.84878 5.97163 6.25964 6.27521 6.36521 6.53799 6.67478 6.77455 6.92478 7.76959 7.89374 7.90861 8.09987 8.41281 8.81482 9.10650 9.65220 11.17185 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.053546 B = 0.002011 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.790051 B =13916.807301 C =14076.271106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.534 6.534 13 N -0.745 5.745 14 C 0.119 3.881 15 C 0.036 3.964 16 N -0.506 5.506 17 C 0.032 3.968 18 C -0.145 4.145 19 C 0.247 3.753 20 C 0.034 3.966 21 O -0.361 6.361 22 C 0.014 3.986 23 C 0.018 3.982 24 O -0.373 6.373 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.397 0.603 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.134 -31.465 -3.812 32.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.409 6.409 13 N -0.400 5.400 14 C -0.005 4.005 15 C -0.092 4.092 16 N -0.231 5.231 17 C -0.095 4.095 18 C -0.183 4.183 19 C 0.170 3.830 20 C -0.094 4.094 21 O -0.281 6.281 22 C -0.063 4.063 23 C -0.058 4.058 24 O -0.294 6.294 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.230 0.770 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.845 -31.240 -3.218 31.944 hybrid contribution 1.366 0.754 -0.895 1.799 sum 7.210 -30.486 -4.113 31.596 Atomic orbital electron populations 1.70002 1.06045 1.26554 1.50220 1.25037 0.94839 0.99238 0.95349 0.86584 0.79757 0.83513 0.78028 1.20707 1.21231 1.19906 1.21231 0.92932 0.91031 1.51329 0.92598 1.18903 0.93199 0.89376 0.98641 1.21864 1.00712 0.91901 1.02481 1.21555 0.88653 0.85548 0.74391 1.90673 1.14487 1.87615 1.48114 1.46124 1.10024 1.05546 1.78276 1.21209 0.94345 0.82102 1.02852 1.22504 0.96039 0.88753 1.01906 1.64881 1.13264 1.01819 1.43158 1.23311 0.97364 0.95698 0.93155 1.23129 0.95955 0.95713 1.03484 1.23809 0.92617 0.86708 0.79912 1.23079 0.94824 0.90958 1.00568 1.89279 1.94165 1.14806 1.29825 1.24439 0.99733 0.93031 0.89074 1.24270 0.99686 0.80685 1.01161 1.88921 1.79307 1.24222 1.36926 0.92965 0.95840 0.95780 0.90200 0.90278 0.77003 0.91768 0.90840 0.89589 0.93707 0.92703 0.88654 0.89662 0.88555 0.88183 0.91369 0.90410 0.87195 0.88066 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.66 5.64 -27.89 -0.16 -2.82 16 11 C 0.51 10.02 7.83 -10.99 -0.09 9.94 16 12 O -0.53 -12.91 15.98 5.55 0.09 -12.82 16 13 N -0.74 -10.62 5.56 -60.30 -0.33 -10.95 16 14 C 0.12 1.55 5.34 -4.05 -0.02 1.52 16 15 C 0.04 0.36 5.14 -3.82 -0.02 0.34 16 16 N -0.51 -5.19 5.40 -230.54 -1.25 -6.43 16 17 C 0.03 0.32 5.11 -1.81 -0.01 0.31 16 18 C -0.14 -1.27 6.54 -25.07 -0.16 -1.43 16 19 C 0.25 2.26 1.40 -25.89 -0.04 2.23 16 20 C 0.03 0.32 6.34 -2.94 -0.02 0.30 16 21 O -0.36 -3.25 10.92 -59.03 -0.64 -3.89 16 22 C 0.01 0.07 7.95 38.19 0.30 0.38 16 23 C 0.02 0.10 8.08 38.19 0.31 0.41 16 24 O -0.37 -3.39 10.80 -59.03 -0.64 -4.03 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.40 4.35 8.47 -40.82 -0.35 4.00 16 31 H 0.06 0.89 6.80 -51.93 -0.35 0.54 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.42 7.81 -51.93 -0.41 0.01 16 35 H 0.05 0.55 7.99 -51.93 -0.41 0.14 16 36 H 0.10 0.95 7.68 -51.93 -0.40 0.55 16 37 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.10 0.92 7.97 -51.93 -0.41 0.51 16 40 H 0.07 0.62 7.40 -51.93 -0.38 0.23 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -35.88 358.66 -9.40 -45.29 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.32 Total: -0.61 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.43 Total: -1.82 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.84 Total: -44.36 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.19 Total: -20.74 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.88 -9.40 -45.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899060988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.744 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds