Wall clock time and date at job start Tue Mar 31 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00127 * 2 1 4 4 C 1.53002 * 109.46941 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46875 * 65.00235 * 4 3 2 6 6 C 1.46505 * 119.99964 * 269.99737 * 5 4 3 7 7 C 1.50701 * 109.46846 * 269.99805 * 6 5 4 8 8 H 1.07999 * 120.00506 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99547 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99554 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00437 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47350 * 89.99074 * 11 9 7 13 13 H 1.48498 * 109.47111 * 209.99790 * 11 9 7 14 14 H 1.48506 * 109.46666 * 329.99104 * 11 9 7 15 15 C 1.34778 * 120.00310 * 89.99611 * 5 4 3 16 16 O 1.21284 * 120.00113 * 179.97438 * 15 5 4 17 17 C 1.50697 * 119.99935 * 0.02562 * 15 5 4 18 18 C 1.52994 * 109.47408 * 179.97438 * 17 15 5 19 19 H 1.08997 * 110.54343 * 56.39194 * 18 17 15 20 20 C 1.54226 * 110.61018 * 179.40739 * 18 17 15 21 21 C 1.51314 * 103.56033 * 118.51532 * 20 18 17 22 22 O 1.21221 * 125.40243 * 180.27040 * 21 20 18 23 23 N 1.33884 * 109.20132 * 0.02562 * 21 20 18 24 24 C 1.33875 * 114.47728 * 0.02562 * 23 21 20 25 25 O 1.21221 * 125.39767 * 179.97438 * 24 23 21 26 26 H 1.08999 * 109.47633 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46859 * 299.99713 * 1 2 3 28 28 H 1.08994 * 109.47414 * 59.99924 * 1 2 3 29 29 H 1.09004 * 109.46784 * 60.00278 * 3 2 1 30 30 H 1.08996 * 109.47181 * 300.00027 * 3 2 1 31 31 H 1.08997 * 109.47062 * 304.99921 * 4 3 2 32 32 H 1.09003 * 109.46699 * 185.00058 * 4 3 2 33 33 H 1.08998 * 109.47245 * 30.00200 * 6 5 4 34 34 H 1.09007 * 109.47226 * 150.00220 * 6 5 4 35 35 H 0.97005 * 119.99957 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47211 * 59.99173 * 17 15 5 37 37 H 1.09003 * 109.46746 * 299.99606 * 17 15 5 38 38 H 1.09000 * 110.60350 * 359.97438 * 20 18 17 39 39 H 1.08999 * 110.60943 * 237.03606 * 20 18 17 40 40 H 0.96999 * 122.75587 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1061 -0.8927 -1.3403 7 6 5.5016 -1.2982 -0.9413 8 1 6.2200 -0.5464 -0.6498 9 6 5.8609 -2.6294 -0.9474 10 7 7.0789 -2.9833 -0.5997 11 14 4.6182 -3.9300 -1.4508 12 1 4.7044 -4.1563 -2.9159 13 1 4.9117 -5.1980 -0.7359 14 1 3.2504 -3.4695 -1.1007 15 6 4.2632 1.3328 -2.3200 16 8 4.6289 0.8190 -3.3560 17 6 4.1305 2.8311 -2.2279 18 6 4.5138 3.4605 -3.5687 19 1 3.9042 3.0485 -4.3728 20 6 4.3729 4.9951 -3.5081 21 6 5.7790 5.4909 -3.7659 22 8 6.1182 6.6542 -3.8004 23 7 6.5903 4.4410 -3.9445 24 6 5.9845 3.2505 -3.8559 25 8 6.5282 2.1747 -3.9845 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8463 -0.8899 31 1 3.8507 0.5684 0.8427 32 1 3.9785 2.1765 0.0902 33 1 3.3857 -1.3633 -0.6714 34 1 3.9137 -1.2124 -2.3645 35 1 7.3318 -3.9198 -0.6043 36 1 4.7924 3.2072 -1.4479 37 1 3.0998 3.0903 -1.9859 38 1 4.0293 5.3101 -2.5228 39 1 3.6932 5.3489 -4.2833 40 1 7.5389 4.5353 -4.1242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931895801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:18 Heat of formation + Delta-G solvation = -170.826775 kcal Electronic energy + Delta-G solvation = -25065.212907 eV Core-core repulsion = 21265.622806 eV Total energy + Delta-G solvation = -3799.590101 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.79653 -40.63950 -39.54648 -38.63131 -36.92918 -36.45336 -34.83547 -34.37302 -31.46960 -30.09400 -28.78995 -27.00530 -26.19599 -24.21497 -23.80572 -22.60323 -21.68947 -19.77973 -19.09396 -18.87848 -18.04609 -17.80326 -17.30405 -16.98934 -16.81824 -16.68242 -16.16639 -16.03540 -15.68138 -15.34051 -15.10801 -14.86560 -14.68377 -14.37739 -13.92105 -13.77704 -13.50433 -13.41636 -13.07669 -12.90431 -12.68157 -12.59007 -12.41460 -12.15697 -11.96137 -11.84476 -11.70847 -11.64107 -11.34402 -10.95832 -10.80152 -10.48390 -10.40149 -9.24880 -8.31749 -6.34304 0.55661 1.31423 1.35289 1.45685 1.79494 1.86011 1.98906 2.32746 2.40043 3.02043 3.07283 3.21142 3.27977 3.44345 3.76371 3.93954 4.23872 4.26494 4.39895 4.51229 4.60602 4.61840 4.63929 4.67779 4.72123 4.87343 4.94117 4.96003 5.03715 5.05935 5.07909 5.09481 5.53037 5.71025 5.74014 6.28963 6.38896 6.43553 6.66684 6.88645 6.94133 7.26994 7.61333 8.85839 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.005158 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.834709 B = 5427.430929 C = 6927.452962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.422 6.422 3 C 0.046 3.954 4 C 0.102 3.898 5 N -0.598 5.598 6 C 0.238 3.762 7 C -0.528 4.528 8 H 0.024 0.976 9 C 0.007 3.993 10 N -0.950 5.950 11 Si 0.947 3.053 12 H -0.279 1.279 13 H -0.274 1.274 14 H -0.239 1.239 15 C 0.480 3.520 16 O -0.569 6.569 17 C -0.118 4.118 18 C -0.102 4.102 19 H 0.134 0.866 20 C -0.130 4.130 21 C 0.533 3.467 22 O -0.525 6.525 23 N -0.684 5.684 24 C 0.512 3.488 25 O -0.498 6.498 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.047 0.953 34 H 0.007 0.993 35 H 0.266 0.734 36 H 0.114 0.886 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.617 19.156 -0.080 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.342 6.342 3 C -0.031 4.031 4 C -0.021 4.021 5 N -0.330 5.330 6 C 0.115 3.885 7 C -0.567 4.567 8 H 0.042 0.958 9 C -0.190 4.190 10 N -0.591 5.591 11 Si 0.770 3.230 12 H -0.204 1.204 13 H -0.199 1.199 14 H -0.162 1.162 15 C 0.269 3.731 16 O -0.448 6.448 17 C -0.157 4.157 18 C -0.124 4.124 19 H 0.152 0.848 20 C -0.168 4.168 21 C 0.324 3.676 22 O -0.400 6.400 23 N -0.349 5.349 24 C 0.300 3.700 25 O -0.368 6.368 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.065 0.935 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.178 0.822 38 H 0.179 0.821 39 H 0.176 0.824 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -15.927 18.565 -0.632 24.469 hybrid contribution 1.083 -1.149 -0.371 1.622 sum -14.844 17.416 -1.003 22.906 Atomic orbital electron populations 1.22847 0.79984 1.02970 1.00996 1.88005 1.21147 1.29410 1.95596 1.23219 0.92595 0.84759 1.02518 1.21915 0.93785 1.00259 0.86139 1.47881 1.65537 1.06959 1.12590 1.19098 0.94368 0.79123 0.95875 1.21657 0.97755 0.92686 1.44577 0.95751 1.25843 0.97321 1.01117 0.94701 1.70068 1.20596 1.17902 1.50533 0.85727 0.80640 0.78275 0.78397 1.20437 1.19940 1.16250 1.21477 0.77227 0.91184 0.83235 1.90758 1.46467 1.76234 1.31318 1.21822 1.07899 0.88854 0.97169 1.21887 0.91839 0.97591 1.01087 0.84821 1.22698 0.93036 0.90758 1.10339 1.21362 0.90247 0.83563 0.72410 1.90798 1.81562 1.18285 1.49312 1.45004 1.14775 1.09434 1.65703 1.21505 0.92067 0.82290 0.74188 1.90983 1.72471 1.28329 1.45044 0.90389 0.92222 0.93198 0.89077 0.91236 0.91550 0.85616 0.93504 0.97478 0.92509 0.86829 0.82189 0.82052 0.82423 0.74945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.42 -11.68 9.53 -148.98 -1.42 -13.10 16 3 C 0.05 0.90 6.28 71.98 0.45 1.35 16 4 C 0.10 2.70 5.62 86.38 0.49 3.19 16 5 N -0.60 -23.39 2.42 -826.14 -2.00 -25.39 16 6 C 0.24 12.15 4.05 85.63 0.35 12.50 16 7 C -0.53 -32.69 9.94 25.60 0.25 -32.44 16 8 H 0.02 1.68 8.06 -2.91 -0.02 1.65 16 9 C 0.01 0.45 5.47 84.65 0.46 0.91 16 10 N -0.95 -63.12 13.96 21.45 0.30 -62.82 16 11 Si 0.95 47.50 27.47 68.60 1.88 49.38 16 12 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 13 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.24 -11.02 6.54 99.48 0.65 -10.37 16 15 C 0.48 17.70 7.35 87.66 0.64 18.35 16 16 O -0.57 -27.76 13.15 18.96 0.25 -27.51 16 17 C -0.12 -2.20 3.59 29.84 0.11 -2.09 16 18 C -0.10 -1.82 2.72 -10.93 -0.03 -1.85 16 19 H 0.13 2.39 8.03 -2.39 -0.02 2.37 16 20 C -0.13 -1.04 6.67 30.46 0.20 -0.83 16 21 C 0.53 9.30 8.55 87.99 0.75 10.05 16 22 O -0.52 -12.43 18.02 -2.85 -0.05 -12.49 16 23 N -0.68 -14.74 5.48 -427.80 -2.34 -17.08 16 24 C 0.51 14.57 7.71 87.99 0.68 15.25 16 25 O -0.50 -21.64 15.42 19.15 0.30 -21.35 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.02 7.30 -2.39 -0.02 1.01 16 31 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 32 H 0.13 2.17 6.44 -2.39 -0.02 2.15 16 33 H 0.05 2.33 6.17 -2.39 -0.01 2.31 16 34 H 0.01 0.40 6.85 -2.38 -0.02 0.38 16 35 H 0.27 16.44 8.31 -92.70 -0.77 15.66 16 36 H 0.11 1.75 7.40 -2.39 -0.02 1.73 16 37 H 0.16 1.23 7.26 -2.39 -0.02 1.22 16 38 H 0.16 0.18 7.74 -2.39 -0.02 0.17 16 39 H 0.16 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.41 8.53 8.96 -92.71 -0.83 7.70 16 Total: -1.00 -100.12 336.45 2.71 -97.42 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.19 Total: 6.78 kcal Atomic # 6 Polarization: 20.55 SS G_CDS: 5.60 Total: 26.15 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.04 Total: -105.29 kcal Atomic # 8 Polarization: -73.51 SS G_CDS: -0.93 Total: -74.44 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.88 Total: 49.38 kcal Total: -100.12 2.71 -97.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931895801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.411 kcal (2) G-P(sol) polarization free energy of solvation -100.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds