Wall clock time and date at job start Tue Mar 31 2020 04:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 110.91439 * 2 1 4 4 C 1.54908 * 111.00481 * 123.90045 * 2 1 3 5 5 N 1.47425 * 104.92961 * 81.01010 * 4 2 1 6 6 C 1.36938 * 125.65179 * 204.15650 * 5 4 2 7 7 H 1.08005 * 119.99558 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00146 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47294 * 89.99594 * 10 8 6 12 12 H 1.48503 * 109.46797 * 209.99511 * 10 8 6 13 13 H 1.48500 * 109.47035 * 329.99310 * 10 8 6 14 14 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 15 15 C 1.54325 * 107.30599 * 358.92448 * 14 5 4 16 16 H 1.09000 * 110.87082 * 219.38096 * 15 14 5 17 17 N 1.46499 * 110.71877 * 96.18142 * 15 14 5 18 18 C 1.34775 * 120.00082 * 91.47873 * 17 15 14 19 19 O 1.21285 * 119.99870 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00069 * 179.97438 * 18 17 15 21 21 H 1.09002 * 109.52601 * 305.13101 * 20 18 17 22 22 C 1.53141 * 109.52693 * 65.32609 * 20 18 17 23 23 O 1.43081 * 109.15393 * 175.21311 * 22 20 18 24 24 C 1.43070 * 113.59289 * 302.04835 * 23 22 20 25 25 C 1.53141 * 109.14984 * 57.94938 * 24 23 22 26 26 O 1.43067 * 109.15428 * 304.68701 * 25 24 23 27 27 H 1.09001 * 109.46742 * 297.54757 * 1 2 3 28 28 H 1.08996 * 109.47279 * 57.55485 * 1 2 3 29 29 H 1.09002 * 109.47053 * 177.55228 * 1 2 3 30 30 H 1.09001 * 109.47276 * 182.45167 * 3 2 1 31 31 H 1.09003 * 109.46690 * 302.44706 * 3 2 1 32 32 H 1.08998 * 109.47248 * 62.44868 * 3 2 1 33 33 H 1.09002 * 110.36632 * 199.90406 * 4 2 1 34 34 H 1.08995 * 110.36781 * 322.11643 * 4 2 1 35 35 H 0.96999 * 120.00175 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.85762 * 239.50064 * 14 5 4 37 37 H 1.08995 * 110.00297 * 118.43011 * 14 5 4 38 38 H 0.96996 * 120.00138 * 271.47877 * 17 15 14 39 39 H 1.08998 * 109.52424 * 295.12012 * 22 20 18 40 40 H 1.09004 * 109.52695 * 55.31080 * 22 20 18 41 41 H 1.08999 * 109.52573 * 298.04865 * 24 23 22 42 42 H 1.08997 * 109.57790 * 177.88517 * 24 23 22 43 43 H 1.09008 * 109.52348 * 184.78201 * 25 24 23 44 44 H 1.09000 * 109.57697 * 64.62772 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8066 1.2003 5 7 2.0137 -2.2167 0.7761 6 6 1.9448 -3.2991 1.6120 7 1 1.9403 -3.1553 2.6824 8 6 1.8819 -4.5812 1.0836 9 7 1.8879 -4.7564 -0.2208 10 14 1.7872 -6.0577 2.2240 11 1 0.3643 -6.3730 2.5085 12 1 2.4330 -7.2267 1.5747 13 1 2.4892 -5.7471 3.4952 14 6 2.0286 -2.2647 -0.6960 15 6 2.0862 -0.8079 -1.2022 16 1 1.4541 -0.6768 -2.0805 17 7 3.4667 -0.4156 -1.4962 18 6 3.9654 -0.5840 -2.7369 19 8 3.2715 -1.0609 -3.6099 20 6 5.3853 -0.1799 -3.0395 21 1 5.5337 0.8640 -2.7633 22 6 6.3498 -1.0635 -2.2430 23 8 7.6939 -0.7493 -2.6195 24 6 7.9508 -0.9153 -4.0171 25 6 6.9863 -0.0318 -4.8136 26 8 5.6423 -0.3460 -4.4372 27 1 -0.3633 0.4753 0.9112 28 1 -0.3633 0.5513 -0.8672 29 1 -0.3633 -1.0267 -0.0439 30 1 3.1650 1.4021 -0.0440 31 1 1.6908 1.9653 -0.8673 32 1 1.7619 1.9383 0.9111 33 1 3.1183 -0.5233 1.4024 34 1 1.4684 -0.6446 2.0842 35 1 1.8436 -5.6523 -0.5901 36 1 1.1219 -2.7480 -1.0599 37 1 2.9050 -2.8123 -1.0423 38 1 4.0218 -0.0346 -0.7980 39 1 6.2173 -0.8785 -1.1770 40 1 6.1465 -2.1122 -2.4597 41 1 7.8013 -1.9590 -4.2935 42 1 8.9778 -0.6238 -4.2369 43 1 7.1188 -0.2168 -5.8797 44 1 7.1893 1.0172 -4.5980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972821502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:14 Heat of formation + Delta-G solvation = -93.085263 kcal Electronic energy + Delta-G solvation = -25967.759206 eV Core-core repulsion = 22307.373324 eV Total energy + Delta-G solvation = -3660.385882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.48766 -39.32421 -37.75551 -36.06530 -33.90981 -33.14237 -31.71779 -30.70109 -28.71923 -27.72104 -26.71019 -25.64102 -25.06904 -23.41693 -21.95395 -20.59537 -19.92177 -18.83499 -17.46299 -16.98858 -16.70520 -16.56795 -16.08806 -15.50813 -15.38360 -14.80215 -14.65478 -14.00151 -13.86691 -13.78828 -13.54343 -13.27953 -13.13652 -12.50274 -12.41892 -12.05713 -12.01799 -11.72842 -11.67585 -11.39512 -11.09516 -10.99582 -10.95995 -10.78723 -10.71332 -10.39751 -10.25600 -10.03582 -9.88957 -9.64563 -9.52744 -9.26102 -8.64977 -8.49206 -6.83569 -5.69700 -3.04504 2.82959 2.93655 3.40409 3.45263 3.47705 3.53393 3.96900 4.39565 4.49825 4.74761 4.77075 4.84776 4.92901 4.95015 5.06574 5.26298 5.28400 5.29123 5.45001 5.53118 5.55825 5.61122 5.67163 5.79444 5.90093 6.01040 6.15119 6.18222 6.21828 6.37407 6.55958 6.59383 6.65521 6.68014 6.75637 6.79269 6.93759 7.54226 7.61470 7.78281 7.87559 8.24512 8.52758 9.21127 9.82134 10.47608 11.41238 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.004962 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.906294 B = 5641.939972 C = 6807.084111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.174 3.826 15 C 0.125 3.875 16 H 0.091 0.909 17 N -0.706 5.706 18 C 0.520 3.480 19 O -0.516 6.516 20 C 0.040 3.960 21 H 0.090 0.910 22 C 0.037 3.963 23 O -0.375 6.375 24 C 0.020 3.980 25 C 0.024 3.976 26 O -0.349 6.349 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.015 0.985 34 H 0.041 0.959 35 H 0.253 0.747 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.396 0.604 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.384 13.487 -4.628 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.049 3.951 15 C 0.020 3.980 16 H 0.109 0.891 17 N -0.359 5.359 18 C 0.304 3.696 19 O -0.390 6.390 20 C -0.022 4.022 21 H 0.108 0.892 22 C -0.040 4.040 23 O -0.293 6.293 24 C -0.057 4.057 25 C -0.053 4.053 26 O -0.267 6.267 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.231 0.769 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.861 12.873 -5.299 15.987 hybrid contribution 0.335 -0.696 0.857 1.154 sum 8.196 12.177 -4.443 15.336 Atomic orbital electron populations 1.21592 0.93222 1.02875 1.00599 1.22029 0.96422 0.94146 0.96539 1.21680 1.00216 0.95579 1.01402 1.21627 0.96563 0.85779 0.94315 1.44489 1.86962 0.99696 1.01744 1.19016 1.43953 0.83972 0.88854 0.90459 1.24802 1.02191 0.97364 0.95936 1.69953 1.56614 1.20800 1.09240 0.86151 0.77609 0.82644 0.79527 1.21616 1.21746 1.20755 1.21566 1.01715 0.88440 0.83385 1.22512 0.80614 0.97582 0.97275 0.89130 1.45929 1.15117 1.64353 1.10465 1.19739 0.87523 0.79307 0.83072 1.90735 1.59819 1.42530 1.45916 1.22589 0.94383 1.00680 0.84520 0.89243 1.23178 0.81486 0.99352 1.00030 1.88101 1.28114 1.89307 1.23814 1.23297 1.00143 1.00261 0.82006 1.23317 0.82593 0.98849 1.00581 1.88246 1.27900 1.89257 1.21337 0.92789 0.93366 0.91251 0.93086 0.92844 0.92598 0.96724 0.94075 0.93665 0.92745 0.93353 0.76931 0.86904 0.90862 0.91743 0.87643 0.87371 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.61 37.16 0.32 -1.64 16 2 C -0.09 -1.45 0.83 -152.36 -0.13 -1.57 16 3 C -0.13 -1.63 8.35 37.16 0.31 -1.32 16 4 C 0.14 2.75 6.11 -2.53 -0.02 2.73 16 5 N -0.60 -14.68 3.39 -169.86 -0.58 -15.26 16 6 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 7 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 9 N -0.92 -27.19 10.33 55.49 0.57 -26.62 16 10 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.17 4.20 4.74 -2.92 -0.01 4.19 16 15 C 0.12 2.33 2.59 -66.10 -0.17 2.16 16 16 H 0.09 1.79 7.45 -51.93 -0.39 1.40 16 17 N -0.71 -11.35 4.38 -52.03 -0.23 -11.58 16 18 C 0.52 9.04 7.18 -10.99 -0.08 8.96 16 19 O -0.52 -11.34 16.16 -14.26 -0.23 -11.57 16 20 C 0.04 0.56 3.25 -27.81 -0.09 0.47 16 21 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 22 C 0.04 0.49 6.29 37.23 0.23 0.72 16 23 O -0.37 -4.71 10.85 -48.80 -0.53 -5.24 16 24 C 0.02 0.20 7.05 37.23 0.26 0.46 16 25 C 0.02 0.24 7.05 37.23 0.26 0.50 16 26 O -0.35 -5.22 10.03 -62.50 -0.63 -5.85 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.29 7.81 -51.93 -0.41 0.88 16 30 H 0.05 0.58 6.27 -51.93 -0.33 0.25 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.28 8.04 -51.93 -0.42 -0.14 16 34 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 36 H 0.05 1.50 7.39 -51.93 -0.38 1.11 16 37 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 38 H 0.40 5.34 6.98 -40.82 -0.29 5.06 16 39 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -33.70 348.90 -7.94 -41.64 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.20 Total: 3.19 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 0.64 Total: 8.98 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.23 Total: -53.46 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.39 Total: -22.66 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.70 -7.94 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972821502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.444 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds