Wall clock time and date at job start Tue Mar 31 2020 04:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 110.91439 * 2 1 4 4 C 1.54908 * 111.00481 * 123.90045 * 2 1 3 5 5 N 1.47425 * 104.92961 * 81.01010 * 4 2 1 6 6 C 1.36938 * 125.65179 * 204.15650 * 5 4 2 7 7 H 1.08005 * 119.99558 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00146 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47294 * 89.99594 * 10 8 6 12 12 H 1.48503 * 109.46797 * 209.99511 * 10 8 6 13 13 H 1.48500 * 109.47035 * 329.99310 * 10 8 6 14 14 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 15 15 C 1.54325 * 107.30599 * 358.92448 * 14 5 4 16 16 H 1.09000 * 110.87082 * 219.38096 * 15 14 5 17 17 N 1.46499 * 110.71877 * 96.18142 * 15 14 5 18 18 C 1.34775 * 120.00082 * 91.47873 * 17 15 14 19 19 O 1.21285 * 119.99870 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00069 * 179.97438 * 18 17 15 21 21 H 1.09002 * 109.52601 * 305.13101 * 20 18 17 22 22 C 1.53141 * 109.52693 * 65.32609 * 20 18 17 23 23 O 1.43081 * 109.15393 * 175.21311 * 22 20 18 24 24 C 1.43070 * 113.59289 * 302.04835 * 23 22 20 25 25 C 1.53141 * 109.14984 * 57.94938 * 24 23 22 26 26 O 1.43067 * 109.15428 * 304.68701 * 25 24 23 27 27 H 1.09001 * 109.46742 * 297.54757 * 1 2 3 28 28 H 1.08996 * 109.47279 * 57.55485 * 1 2 3 29 29 H 1.09002 * 109.47053 * 177.55228 * 1 2 3 30 30 H 1.09001 * 109.47276 * 182.45167 * 3 2 1 31 31 H 1.09003 * 109.46690 * 302.44706 * 3 2 1 32 32 H 1.08998 * 109.47248 * 62.44868 * 3 2 1 33 33 H 1.09002 * 110.36632 * 199.90406 * 4 2 1 34 34 H 1.08995 * 110.36781 * 322.11643 * 4 2 1 35 35 H 0.96999 * 120.00175 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.85762 * 239.50064 * 14 5 4 37 37 H 1.08995 * 110.00297 * 118.43011 * 14 5 4 38 38 H 0.96996 * 120.00138 * 271.47877 * 17 15 14 39 39 H 1.08998 * 109.52424 * 295.12012 * 22 20 18 40 40 H 1.09004 * 109.52695 * 55.31080 * 22 20 18 41 41 H 1.08999 * 109.52573 * 298.04865 * 24 23 22 42 42 H 1.08997 * 109.57790 * 177.88517 * 24 23 22 43 43 H 1.09008 * 109.52348 * 184.78201 * 25 24 23 44 44 H 1.09000 * 109.57697 * 64.62772 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8066 1.2003 5 7 2.0137 -2.2167 0.7761 6 6 1.9448 -3.2991 1.6120 7 1 1.9403 -3.1553 2.6824 8 6 1.8819 -4.5812 1.0836 9 7 1.8879 -4.7564 -0.2208 10 14 1.7872 -6.0577 2.2240 11 1 0.3643 -6.3730 2.5085 12 1 2.4330 -7.2267 1.5747 13 1 2.4892 -5.7471 3.4952 14 6 2.0286 -2.2647 -0.6960 15 6 2.0862 -0.8079 -1.2022 16 1 1.4541 -0.6768 -2.0805 17 7 3.4667 -0.4156 -1.4962 18 6 3.9654 -0.5840 -2.7369 19 8 3.2715 -1.0609 -3.6099 20 6 5.3853 -0.1799 -3.0395 21 1 5.5337 0.8640 -2.7633 22 6 6.3498 -1.0635 -2.2430 23 8 7.6939 -0.7493 -2.6195 24 6 7.9508 -0.9153 -4.0171 25 6 6.9863 -0.0318 -4.8136 26 8 5.6423 -0.3460 -4.4372 27 1 -0.3633 0.4753 0.9112 28 1 -0.3633 0.5513 -0.8672 29 1 -0.3633 -1.0267 -0.0439 30 1 3.1650 1.4021 -0.0440 31 1 1.6908 1.9653 -0.8673 32 1 1.7619 1.9383 0.9111 33 1 3.1183 -0.5233 1.4024 34 1 1.4684 -0.6446 2.0842 35 1 1.8436 -5.6523 -0.5901 36 1 1.1219 -2.7480 -1.0599 37 1 2.9050 -2.8123 -1.0423 38 1 4.0218 -0.0346 -0.7980 39 1 6.2173 -0.8785 -1.1770 40 1 6.1465 -2.1122 -2.4597 41 1 7.8013 -1.9590 -4.2935 42 1 8.9778 -0.6238 -4.2369 43 1 7.1188 -0.2168 -5.8797 44 1 7.1893 1.0172 -4.5980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972821502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:14 Heat of formation + Delta-G solvation = -117.504433 kcal Electronic energy + Delta-G solvation = -25968.818100 eV Core-core repulsion = 22307.373324 eV Total energy + Delta-G solvation = -3661.444776 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71216 -40.61718 -39.22111 -37.08579 -35.70424 -34.65250 -32.75115 -32.59038 -30.06568 -29.00111 -27.97585 -27.37840 -26.16083 -25.02817 -23.04223 -22.19685 -21.44284 -20.22860 -18.69270 -18.68028 -18.08655 -17.66310 -17.10816 -16.86701 -16.52121 -16.47229 -15.95926 -15.67525 -15.39682 -15.20031 -14.79843 -14.55565 -14.28950 -13.94077 -13.75521 -13.44301 -13.28898 -13.14943 -12.97387 -12.83089 -12.70177 -12.67778 -12.55681 -12.11701 -11.93216 -11.84412 -11.73559 -11.64369 -11.52881 -11.31068 -10.88372 -10.71666 -10.30484 -10.04853 -8.88054 -7.83226 -5.19262 1.44347 1.45479 1.46513 1.55106 1.74298 2.49628 2.60138 2.89650 3.35794 3.39833 3.49381 3.62311 3.74514 3.80386 3.94276 3.97569 4.08221 4.11474 4.22631 4.40611 4.45031 4.51934 4.52667 4.69326 4.77029 4.79013 4.86642 4.90481 4.97947 5.04976 5.14182 5.18820 5.28818 5.36999 5.47352 5.57501 5.67927 5.74073 5.82785 5.87753 6.18003 6.50257 7.08259 7.18311 7.78617 8.43162 9.26443 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.004962 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.906294 B = 5641.939972 C = 6807.084111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.620 5.620 6 C -0.233 4.233 7 H 0.088 0.912 8 C -0.069 4.069 9 N -0.955 5.955 10 Si 0.975 3.025 11 H -0.288 1.288 12 H -0.301 1.301 13 H -0.264 1.264 14 C 0.192 3.808 15 C 0.137 3.863 16 H 0.078 0.922 17 N -0.691 5.691 18 C 0.516 3.484 19 O -0.570 6.570 20 C 0.051 3.949 21 H 0.128 0.872 22 C 0.042 3.958 23 O -0.379 6.379 24 C 0.014 3.986 25 C 0.020 3.980 26 O -0.385 6.385 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.242 0.758 36 H 0.004 0.996 37 H 0.002 0.998 38 H 0.412 0.588 39 H 0.128 0.872 40 H 0.042 0.958 41 H 0.053 0.947 42 H 0.141 0.859 43 H 0.128 0.872 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 16.613 -3.257 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.076 4.076 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.362 4.362 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.605 5.605 10 Si 0.804 3.196 11 H -0.215 1.215 12 H -0.228 1.228 13 H -0.188 1.188 14 C 0.066 3.934 15 C 0.031 3.969 16 H 0.096 0.904 17 N -0.344 5.344 18 C 0.302 3.698 19 O -0.448 6.448 20 C -0.011 4.011 21 H 0.146 0.854 22 C -0.035 4.035 23 O -0.298 6.298 24 C -0.063 4.063 25 C -0.056 4.056 26 O -0.304 6.304 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.022 0.978 37 H 0.020 0.980 38 H 0.251 0.749 39 H 0.146 0.854 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.158 0.842 43 H 0.146 0.854 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.416 16.065 -3.872 19.019 hybrid contribution -0.109 -1.656 0.406 1.708 sum 9.307 14.409 -3.466 17.500 Atomic orbital electron populations 1.21593 0.92948 1.00874 1.02720 1.22005 0.96624 0.95983 0.92982 1.21664 1.01100 0.92243 1.03190 1.21913 0.97931 0.83144 0.95740 1.44724 1.86618 1.01640 1.01592 1.19477 1.41969 0.84978 0.89775 0.89382 1.25644 1.03058 1.00318 0.97185 1.70224 1.58668 1.20383 1.11203 0.85118 0.77445 0.78866 0.78179 1.21462 1.22793 1.18846 1.21126 0.97223 0.91338 0.83758 1.22097 0.82229 0.94754 0.97778 0.90426 1.45717 1.14275 1.63600 1.10835 1.20505 0.88831 0.77924 0.82525 1.90709 1.61594 1.44928 1.47606 1.22541 0.91353 1.02506 0.84660 0.85442 1.23071 0.82118 0.97524 1.00824 1.88096 1.27151 1.89114 1.25409 1.23551 1.02083 0.99900 0.80721 1.23620 0.80274 1.00041 1.01703 1.88203 1.30742 1.89845 1.21646 0.90465 0.91444 0.95309 0.91557 0.91668 0.90297 0.94658 0.93313 0.94827 0.97771 0.97968 0.74933 0.85381 0.93963 0.92901 0.84152 0.85433 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.71 8.61 71.98 0.62 -3.09 16 2 C -0.07 -2.26 0.83 -50.79 -0.04 -2.30 16 3 C -0.12 -2.53 8.35 71.98 0.60 -1.93 16 4 C 0.14 5.01 6.11 86.85 0.53 5.54 16 5 N -0.62 -30.78 3.39 -691.30 -2.34 -33.12 16 6 C -0.23 -12.85 10.28 84.03 0.86 -11.99 16 7 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 8 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 9 N -0.96 -59.98 10.33 21.65 0.22 -59.76 16 10 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 14 C 0.19 9.80 4.74 86.68 0.41 10.21 16 15 C 0.14 5.20 2.59 46.18 0.12 5.32 16 16 H 0.08 3.18 7.45 -2.39 -0.02 3.16 16 17 N -0.69 -21.76 4.38 -436.92 -1.91 -23.67 16 18 C 0.52 18.04 7.18 87.66 0.63 18.67 16 19 O -0.57 -26.19 16.16 15.90 0.26 -25.94 16 20 C 0.05 1.34 3.25 29.89 0.10 1.43 16 21 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 22 C 0.04 1.09 6.29 72.03 0.45 1.54 16 23 O -0.38 -8.77 10.85 -136.00 -1.48 -10.25 16 24 C 0.01 0.25 7.05 72.03 0.51 0.75 16 25 C 0.02 0.35 7.05 72.03 0.51 0.86 16 26 O -0.39 -11.17 10.03 -122.90 -1.23 -12.41 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.03 1.08 7.81 -2.39 -0.02 1.06 16 30 H 0.07 1.16 6.27 -2.39 -0.01 1.15 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.18 8.04 -2.39 -0.02 1.16 16 34 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 35 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.00 0.25 7.39 -2.38 -0.02 0.23 16 37 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 38 H 0.41 10.12 6.98 -92.71 -0.65 9.47 16 39 H 0.13 2.80 8.08 -2.39 -0.02 2.78 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -79.62 348.90 1.65 -77.97 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.34 Total: 17.14 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 5.76 Total: 21.48 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -4.03 Total: -116.55 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -2.45 Total: -48.59 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -79.62 1.65 -77.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972821502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.530 kcal (2) G-P(sol) polarization free energy of solvation -79.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds