Wall clock time and date at job start Tue Mar 31 2020 04:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99828 * 2 1 4 4 H 1.48510 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47221 * 299.99556 * 3 2 1 6 6 H 1.48495 * 109.47195 * 60.00357 * 3 2 1 7 7 C 1.38813 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00006 * 194.63722 * 7 2 1 9 9 N 1.36934 * 120.00040 * 14.62801 * 7 2 1 10 10 C 1.43459 * 118.94209 * 204.94024 * 9 7 2 11 11 C 1.53789 * 107.96174 * 273.65701 * 10 9 7 12 12 C 1.47144 * 111.84635 * 281.66774 * 11 10 9 13 13 N 1.48219 * 110.34018 * 58.29157 * 12 11 10 14 14 C 1.34770 * 119.96661 * 102.51648 * 13 12 11 15 15 O 1.21280 * 120.00243 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99632 * 179.97438 * 14 13 12 17 17 O 1.42904 * 109.47113 * 180.02562 * 16 14 13 18 18 C 1.42889 * 114.00196 * 180.02562 * 17 16 14 19 19 H 1.08998 * 110.45995 * 27.39803 * 18 17 16 20 20 C 1.54509 * 110.51267 * 149.99885 * 18 17 16 21 21 C 1.54479 * 104.06294 * 118.64476 * 20 18 17 22 22 O 1.44428 * 104.80100 * 23.98115 * 21 20 18 23 23 C 1.44421 * 105.27610 * 319.48952 * 22 21 20 24 24 C 1.43619 * 120.06017 * 282.50002 * 13 12 11 25 25 C 1.48859 * 118.93956 * 24.96408 * 9 7 2 26 26 H 0.96998 * 120.00109 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.76386 * 33.27645 * 10 9 7 28 28 H 1.09007 * 109.76177 * 153.98926 * 10 9 7 29 29 H 1.09006 * 109.00784 * 42.27458 * 11 10 9 30 30 H 1.08996 * 109.01284 * 161.13442 * 11 10 9 31 31 H 1.08990 * 109.32797 * 178.56001 * 12 11 10 32 32 H 1.08997 * 109.32064 * 298.03217 * 12 11 10 33 33 H 1.08994 * 109.47579 * 300.00026 * 16 14 13 34 34 H 1.09005 * 109.46998 * 60.01040 * 16 14 13 35 35 H 1.08994 * 110.51462 * 237.28880 * 20 18 17 36 36 H 1.09000 * 110.51209 * 0.02562 * 20 18 17 37 37 H 1.09004 * 110.37517 * 142.80928 * 21 20 18 38 38 H 1.09000 * 110.37933 * 265.15492 * 21 20 18 39 39 H 1.09006 * 110.36975 * 281.67985 * 23 22 21 40 40 H 1.09003 * 110.37649 * 159.34692 * 23 22 21 41 41 H 1.09008 * 108.87546 * 329.87982 * 24 13 12 42 42 H 1.09001 * 108.87236 * 211.45030 * 24 13 12 43 43 H 1.08999 * 109.47720 * 20.61157 * 25 9 7 44 44 H 1.08998 * 109.48944 * 260.58782 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0640 -1.2174 0.2358 9 7 1.3589 -2.3687 -0.3005 10 6 1.8828 -3.6056 0.2030 11 6 2.9396 -4.1133 -0.7923 12 6 2.3238 -4.7447 -1.9701 13 7 1.4277 -3.7860 -2.6592 14 6 1.8363 -3.1753 -3.7889 15 8 2.9370 -3.4099 -4.2410 16 6 0.9255 -2.2008 -4.4904 17 8 1.5792 -1.6912 -5.6545 18 6 0.7974 -0.7529 -6.3962 19 1 0.0941 -0.2401 -5.7401 20 6 1.7111 0.2665 -7.1126 21 6 1.4078 0.0533 -8.6123 22 8 0.0827 -0.5203 -8.6428 23 6 0.0501 -1.4613 -7.5477 24 6 0.1242 -3.5076 -2.1242 25 6 0.1303 -2.3125 -1.1392 26 1 -0.4850 0.8400 0.0004 27 1 2.3429 -3.4416 1.1774 28 1 1.0792 -4.3366 0.2934 29 1 3.5518 -3.2729 -1.1195 30 1 3.5767 -4.8428 -0.2923 31 1 3.1061 -5.0654 -2.6578 32 1 1.7471 -5.6136 -1.6533 33 1 0.0066 -2.7085 -4.7832 34 1 0.6872 -1.3772 -3.8173 35 1 1.4579 1.2833 -6.8126 36 1 2.7592 0.0544 -6.9015 37 1 1.4210 1.0063 -9.1414 38 1 2.1295 -0.6355 -9.0513 39 1 0.5637 -2.3823 -7.8234 40 1 -0.9797 -1.6720 -7.2588 41 1 -0.2392 -4.3929 -1.6022 42 1 -0.5540 -3.2828 -2.9473 43 1 0.1160 -1.3785 -1.7008 44 1 -0.7500 -2.3649 -0.4985 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981148212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:27 Heat of formation + Delta-G solvation = -87.311098 kcal Electronic energy + Delta-G solvation = -25899.846571 eV Core-core repulsion = 22239.711076 eV Total energy + Delta-G solvation = -3660.135495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00425 -39.43748 -37.33472 -36.50536 -34.26890 -32.89681 -31.44110 -30.91658 -29.00547 -27.98183 -27.16053 -25.23904 -23.73041 -23.06032 -21.91955 -21.23575 -19.80761 -18.69566 -17.40075 -17.12691 -16.54238 -16.16036 -15.99435 -15.71454 -15.31835 -14.99302 -14.57918 -14.11600 -13.95555 -13.69153 -13.41801 -13.15319 -13.03789 -12.62139 -12.44512 -12.22559 -12.12459 -11.88869 -11.61175 -11.43561 -11.34186 -11.04428 -10.81579 -10.79980 -10.56487 -10.29409 -10.22340 -10.04113 -9.91628 -9.74223 -9.51804 -9.26926 -8.53585 -8.09978 -6.76057 -5.85556 -3.26856 2.93936 3.12848 3.32375 3.41235 3.44774 3.77929 4.08853 4.44853 4.46205 4.67092 4.83326 4.92338 5.10196 5.13842 5.22329 5.26349 5.36478 5.44023 5.55658 5.56158 5.57143 5.62007 5.66091 5.75879 5.77107 5.88476 5.90126 6.01896 6.07319 6.24396 6.41386 6.49302 6.53350 6.78850 6.85054 7.01570 7.13959 7.30649 7.40684 7.75911 7.90968 8.37937 8.63230 9.14986 9.82472 10.27219 11.22576 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.005372 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.833184 B = 5211.118805 C = 6512.393835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.003 3.997 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.163 3.837 11 C -0.171 4.171 12 C 0.132 3.868 13 N -0.583 5.583 14 C 0.524 3.476 15 O -0.538 6.538 16 C 0.043 3.957 17 O -0.350 6.350 18 C 0.053 3.947 19 H 0.081 0.919 20 C -0.156 4.156 21 C 0.046 3.954 22 O -0.374 6.374 23 C 0.024 3.976 24 C 0.076 3.924 25 C 0.163 3.837 26 H 0.253 0.747 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 -5.108 -10.385 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.195 4.195 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.034 3.966 11 C -0.212 4.212 12 C 0.011 3.989 13 N -0.317 5.317 14 C 0.311 3.689 15 O -0.415 6.415 16 C -0.036 4.036 17 O -0.268 6.268 18 C -0.005 4.005 19 H 0.099 0.901 20 C -0.194 4.194 21 C -0.030 4.030 22 O -0.293 6.293 23 C -0.053 4.053 24 C -0.050 4.050 25 C 0.037 3.963 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.508 -5.118 -10.819 12.063 hybrid contribution 0.233 1.056 0.422 1.160 sum -1.275 -4.062 -10.397 11.235 Atomic orbital electron populations 1.70015 1.05065 1.25286 1.55211 1.24947 0.95323 0.98173 1.01039 0.86281 0.79546 0.84113 0.77277 1.20294 1.21607 1.21678 1.19243 0.92191 0.84830 1.41615 0.91676 1.43649 1.29024 1.02067 1.56541 1.20288 0.93679 0.88309 0.94309 1.21884 1.00840 1.00802 0.97662 1.20543 0.93583 0.90246 0.94535 1.47303 1.17139 1.43279 1.23932 1.19967 0.87314 0.80830 0.80825 1.90649 1.21432 1.63152 1.66280 1.22422 0.94895 0.97924 0.88406 1.88043 1.41097 1.59892 1.37786 1.23536 0.93437 0.90055 0.93502 0.90050 1.23026 1.02129 0.99178 0.95048 1.23419 0.84818 0.98874 0.95912 1.89117 1.31769 1.57541 1.50883 1.23964 1.01556 0.93288 0.86500 1.22273 0.83020 1.01325 0.98357 1.21935 0.89053 0.94477 0.90808 0.93732 0.93554 0.94782 0.91278 0.92552 0.90454 0.91993 0.90814 0.89135 0.89630 0.88747 0.88882 0.91907 0.91041 0.88725 0.91715 0.91799 0.90640 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.87 10.90 55.49 0.60 -24.26 16 2 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 3 Si 0.90 21.52 29.58 -169.99 -5.03 16.50 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.25 -6.59 9.27 -15.06 -0.14 -6.73 16 8 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 9 N -0.59 -13.75 2.54 -172.00 -0.44 -14.19 16 10 C 0.16 3.19 5.63 -5.24 -0.03 3.16 16 11 C -0.17 -3.03 5.64 -29.13 -0.16 -3.20 16 12 C 0.13 2.17 5.70 -5.91 -0.03 2.14 16 13 N -0.58 -10.28 2.46 -176.65 -0.43 -10.71 16 14 C 0.52 10.04 7.75 -10.99 -0.09 9.96 16 15 O -0.54 -12.10 15.93 -14.35 -0.23 -12.33 16 16 C 0.04 0.70 4.81 36.01 0.17 0.87 16 17 O -0.35 -5.84 9.51 -55.14 -0.52 -6.37 16 18 C 0.05 0.71 3.61 -25.17 -0.09 0.62 16 19 H 0.08 1.02 7.82 -51.93 -0.41 0.61 16 20 C -0.16 -1.86 6.90 -25.16 -0.17 -2.03 16 21 C 0.05 0.50 7.63 37.93 0.29 0.79 16 22 O -0.37 -4.80 11.65 -35.23 -0.41 -5.21 16 23 C 0.02 0.29 7.38 37.93 0.28 0.57 16 24 C 0.08 1.24 5.05 -4.58 -0.02 1.21 16 25 C 0.16 3.46 5.18 -1.75 -0.01 3.45 16 26 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.05 0.93 8.02 -51.93 -0.42 0.52 16 28 H 0.03 0.61 7.59 -51.93 -0.39 0.21 16 29 H 0.07 1.48 7.91 -51.93 -0.41 1.07 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.31 7.12 -51.93 -0.37 0.94 16 32 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 33 H 0.07 0.95 7.37 -51.93 -0.38 0.57 16 34 H 0.09 1.54 7.28 -51.93 -0.38 1.17 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.19 8.00 -51.93 -0.42 0.78 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.95 7.73 -51.92 -0.40 0.54 16 42 H 0.06 0.88 6.38 -51.93 -0.33 0.55 16 43 H 0.08 1.78 5.72 -51.93 -0.30 1.49 16 44 H 0.04 0.99 8.00 -51.93 -0.42 0.57 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -31.83 345.35 -8.46 -40.30 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.12 Total: 0.29 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -0.09 Total: 10.79 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.27 Total: -49.16 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.16 Total: -23.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.83 -8.46 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981148212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.016 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds