Wall clock time and date at job start Tue Mar 31 2020 04:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48503 * 109.46921 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46964 * 119.99834 * 3 2 1 6 6 H 1.48493 * 109.47032 * 240.00233 * 3 2 1 7 7 C 1.38810 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99911 * 194.19497 * 7 2 1 9 9 N 1.36939 * 120.00060 * 14.19151 * 7 2 1 10 10 C 1.46927 * 120.62739 * 30.87528 * 9 7 2 11 11 C 1.53628 * 108.54052 * 126.36795 * 10 9 7 12 12 C 1.53037 * 109.24233 * 54.85650 * 11 10 9 13 13 C 1.53044 * 109.53599 * 298.50799 * 12 11 10 14 14 C 1.46921 * 120.63091 * 211.15355 * 9 7 2 15 15 H 1.08998 * 109.58667 * 113.65696 * 14 9 7 16 16 C 1.53000 * 109.58741 * 353.37492 * 14 9 7 17 17 N 1.46501 * 109.47212 * 60.20325 * 16 14 9 18 18 C 1.34769 * 120.00069 * 179.97438 * 17 16 14 19 19 O 1.21286 * 120.00003 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00203 * 180.02562 * 18 17 16 21 21 H 1.09001 * 109.52065 * 305.00243 * 20 18 17 22 22 C 1.53137 * 109.52554 * 65.12854 * 20 18 17 23 23 O 1.43090 * 109.14548 * 175.14935 * 22 20 18 24 24 C 1.43071 * 113.64646 * 302.14814 * 23 22 20 25 25 C 1.53144 * 109.14846 * 57.91830 * 24 23 22 26 26 O 1.43069 * 109.15202 * 304.68220 * 25 24 23 27 27 H 0.96993 * 120.00353 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.58729 * 246.19735 * 10 9 7 29 29 H 1.09001 * 109.59125 * 6.62907 * 10 9 7 30 30 H 1.08996 * 109.63485 * 294.86089 * 11 10 9 31 31 H 1.09003 * 109.42914 * 174.72171 * 11 10 9 32 32 H 1.09003 * 109.45979 * 178.48868 * 12 11 10 33 33 H 1.08995 * 109.46273 * 58.52942 * 12 11 10 34 34 H 1.08990 * 109.49772 * 301.41183 * 13 12 11 35 35 H 1.09009 * 109.52167 * 181.33424 * 13 12 11 36 36 H 1.09003 * 109.46849 * 180.20464 * 16 14 9 37 37 H 1.09000 * 109.47089 * 300.20111 * 16 14 9 38 38 H 0.97004 * 119.99664 * 0.02562 * 17 16 14 39 39 H 1.09004 * 109.52798 * 295.12041 * 22 20 18 40 40 H 1.09004 * 109.52781 * 55.31220 * 22 20 18 41 41 H 1.08995 * 109.53030 * 298.01758 * 24 23 22 42 42 H 1.09001 * 109.52596 * 177.81626 * 24 23 22 43 43 H 1.09008 * 109.52535 * 184.78367 * 25 24 23 44 44 H 1.08996 * 109.57984 * 64.62209 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0655 -1.2164 0.2288 9 7 1.3570 -2.3698 -0.2918 10 6 0.2122 -2.3774 -1.2128 11 6 0.4782 -3.4149 -2.3141 12 6 0.7744 -4.7707 -1.6690 13 6 2.0286 -4.6603 -0.7989 14 6 1.7837 -3.6378 0.3154 15 1 1.0046 -4.0030 0.9845 16 6 3.0763 -3.4194 1.1042 17 7 2.8425 -2.4324 2.1613 18 6 3.8466 -2.0801 2.9883 19 8 4.9437 -2.5805 2.8578 20 6 3.6059 -1.0652 4.0761 21 1 3.2047 -0.1509 3.6388 22 6 2.6064 -1.6290 5.0901 23 8 2.4700 -0.7078 6.1765 24 6 3.7031 -0.4186 6.8420 25 6 4.7013 0.1458 5.8270 26 8 4.8390 -0.7760 4.7416 27 1 -0.4850 0.8400 0.0004 28 1 -0.6935 -2.6432 -0.6677 29 1 0.0959 -1.3900 -1.6594 30 1 1.3335 -3.1023 -2.9130 31 1 -0.4015 -3.5001 -2.9521 32 1 0.9373 -5.5156 -2.4479 33 1 -0.0713 -5.0712 -1.0506 34 1 2.8693 -4.3360 -1.4119 35 1 2.2529 -5.6318 -0.3583 36 1 3.3931 -4.3620 1.5508 37 1 3.8545 -3.0558 0.4331 38 1 1.9648 -2.0330 2.2663 39 1 1.6392 -1.7711 4.6079 40 1 2.9702 -2.5847 5.4675 41 1 4.1049 -1.3331 7.2782 42 1 3.5290 0.3155 7.6287 43 1 5.6689 0.2888 6.3084 44 1 4.3376 1.1014 5.4496 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024339149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:54 Heat of formation + Delta-G solvation = -103.607809 kcal Electronic energy + Delta-G solvation = -26067.832746 eV Core-core repulsion = 22406.990573 eV Total energy + Delta-G solvation = -3660.842173 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24580 -38.78990 -37.61704 -35.94563 -34.17709 -33.10486 -31.95788 -30.56258 -29.93551 -28.17151 -26.02251 -25.11692 -24.32406 -22.19706 -21.79626 -20.73452 -19.93036 -19.13698 -17.48617 -16.90584 -16.44057 -16.32823 -15.85122 -15.60603 -15.26852 -14.93258 -14.42090 -14.15582 -13.93966 -13.65840 -13.43294 -13.31650 -12.94951 -12.72385 -12.47980 -12.27932 -12.06082 -11.79743 -11.53021 -11.23330 -10.98232 -10.80860 -10.79842 -10.61068 -10.55717 -10.33158 -10.18484 -10.02953 -9.57849 -9.47104 -9.31425 -9.08573 -8.63168 -8.28784 -6.70443 -5.88713 -3.35137 3.00853 3.20494 3.30207 3.37292 3.40884 3.64652 4.19922 4.39263 4.55434 4.92306 4.96488 5.00583 5.11257 5.18711 5.27597 5.30286 5.43805 5.47747 5.55531 5.62051 5.66126 5.69830 5.76860 5.94162 6.01689 6.11765 6.25965 6.33750 6.38883 6.57096 6.67851 6.70905 6.82324 6.87204 6.93518 6.95503 7.12189 7.34818 7.61423 7.74689 8.15984 8.36266 8.76406 9.11825 9.73297 10.31580 11.17800 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.005520 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.131542 B = 5071.296020 C = 6070.287236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.892 3.108 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.136 3.864 17 N -0.689 5.689 18 C 0.518 3.482 19 O -0.541 6.541 20 C 0.037 3.963 21 H 0.097 0.903 22 C 0.040 3.960 23 O -0.374 6.374 24 C 0.022 3.978 25 C 0.022 3.978 26 O -0.351 6.351 27 H 0.255 0.745 28 H 0.019 0.981 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.416 0.584 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.309 -3.981 7.649 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.722 3.278 4 H -0.216 1.216 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.342 5.342 18 C 0.302 3.698 19 O -0.419 6.419 20 C -0.025 4.025 21 H 0.115 0.885 22 C -0.037 4.037 23 O -0.292 6.292 24 C -0.055 4.055 25 C -0.055 4.055 26 O -0.269 6.269 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.254 0.746 39 H 0.133 0.867 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.965 -4.186 7.559 9.135 hybrid contribution 0.025 1.279 -0.073 1.281 sum 2.990 -2.907 7.486 8.569 Atomic orbital electron populations 1.69986 1.05100 1.25706 1.53356 1.25068 0.95194 0.98093 1.00698 0.86533 0.79026 0.83788 0.78440 1.21559 1.20875 1.20951 1.19163 0.92061 0.84082 1.43081 0.91288 1.44078 1.35924 1.01981 1.49252 1.20852 0.88402 0.97489 0.88426 1.22270 0.99954 0.96578 0.99591 1.21358 0.97561 0.97376 0.98182 1.21936 0.98255 0.98209 0.98282 1.20739 0.93163 0.88601 0.92174 0.94972 1.21317 0.98492 0.90308 0.88661 1.45922 1.14034 1.43190 1.31021 1.19710 0.85119 0.82541 0.82467 1.90665 1.23958 1.54798 1.72436 1.22610 0.86826 0.99689 0.93327 0.88534 1.23158 1.00570 0.92330 0.87656 1.88117 1.29947 1.64687 1.46492 1.23279 0.85825 1.01180 0.95231 1.23309 1.00941 0.92878 0.88410 1.88205 1.28226 1.64142 1.46367 0.93476 0.96285 0.89753 0.92817 0.93572 0.93723 0.92872 0.92058 0.93008 0.92494 0.91448 0.74640 0.86740 0.91648 0.92044 0.87731 0.87533 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 11.23 55.49 0.62 -23.15 16 2 C 0.01 0.23 4.96 -17.43 -0.09 0.14 16 3 Si 0.89 20.83 29.58 -169.99 -5.03 15.80 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.20 6.97 -15.06 -0.10 -6.30 16 8 H 0.07 1.74 5.86 -52.49 -0.31 1.43 16 9 N -0.59 -13.06 2.97 -164.51 -0.49 -13.54 16 10 C 0.17 3.82 5.30 -3.48 -0.02 3.80 16 11 C -0.14 -2.63 6.10 -26.39 -0.16 -2.79 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 13 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 14 C 0.16 2.99 3.01 -67.60 -0.20 2.79 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.51 4.43 -4.04 -0.02 2.49 16 17 N -0.69 -12.87 3.81 -60.29 -0.23 -13.10 16 18 C 0.52 10.04 7.18 -10.99 -0.08 9.96 16 19 O -0.54 -12.22 16.51 -14.26 -0.24 -12.45 16 20 C 0.04 0.63 3.25 -27.81 -0.09 0.54 16 21 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 22 C 0.04 0.58 6.30 37.23 0.23 0.81 16 23 O -0.37 -5.29 10.85 -48.80 -0.53 -5.82 16 24 C 0.02 0.24 7.05 37.23 0.26 0.51 16 25 C 0.02 0.27 7.05 37.23 0.26 0.53 16 26 O -0.35 -6.03 10.03 -62.50 -0.63 -6.66 16 27 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 2.11 6.19 -51.93 -0.32 1.79 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.38 7.42 -51.93 -0.39 0.99 16 38 H 0.42 7.93 7.31 -40.82 -0.30 7.63 16 39 H 0.11 1.52 8.06 -51.93 -0.42 1.11 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.11 1.03 8.14 -51.92 -0.42 0.61 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -29.55 344.41 -8.83 -38.38 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.21 Total: 6.95 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.30 Total: 8.40 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.09 Total: -49.79 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.39 Total: -24.93 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.55 -8.83 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024339149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.225 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds