Wall clock time and date at job start Tue Mar 31 2020 04:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48503 * 109.46921 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46964 * 119.99834 * 3 2 1 6 6 H 1.48493 * 109.47032 * 240.00233 * 3 2 1 7 7 C 1.38810 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99911 * 194.19497 * 7 2 1 9 9 N 1.36939 * 120.00060 * 14.19151 * 7 2 1 10 10 C 1.46927 * 120.62739 * 30.87528 * 9 7 2 11 11 C 1.53628 * 108.54052 * 126.36795 * 10 9 7 12 12 C 1.53037 * 109.24233 * 54.85650 * 11 10 9 13 13 C 1.53044 * 109.53599 * 298.50799 * 12 11 10 14 14 C 1.46921 * 120.63091 * 211.15355 * 9 7 2 15 15 H 1.08998 * 109.58667 * 113.65696 * 14 9 7 16 16 C 1.53000 * 109.58741 * 353.37492 * 14 9 7 17 17 N 1.46501 * 109.47212 * 60.20325 * 16 14 9 18 18 C 1.34769 * 120.00069 * 179.97438 * 17 16 14 19 19 O 1.21286 * 120.00003 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00203 * 180.02562 * 18 17 16 21 21 H 1.09001 * 109.52065 * 305.00243 * 20 18 17 22 22 C 1.53137 * 109.52554 * 65.12854 * 20 18 17 23 23 O 1.43090 * 109.14548 * 175.14935 * 22 20 18 24 24 C 1.43071 * 113.64646 * 302.14814 * 23 22 20 25 25 C 1.53144 * 109.14846 * 57.91830 * 24 23 22 26 26 O 1.43069 * 109.15202 * 304.68220 * 25 24 23 27 27 H 0.96993 * 120.00353 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.58729 * 246.19735 * 10 9 7 29 29 H 1.09001 * 109.59125 * 6.62907 * 10 9 7 30 30 H 1.08996 * 109.63485 * 294.86089 * 11 10 9 31 31 H 1.09003 * 109.42914 * 174.72171 * 11 10 9 32 32 H 1.09003 * 109.45979 * 178.48868 * 12 11 10 33 33 H 1.08995 * 109.46273 * 58.52942 * 12 11 10 34 34 H 1.08990 * 109.49772 * 301.41183 * 13 12 11 35 35 H 1.09009 * 109.52167 * 181.33424 * 13 12 11 36 36 H 1.09003 * 109.46849 * 180.20464 * 16 14 9 37 37 H 1.09000 * 109.47089 * 300.20111 * 16 14 9 38 38 H 0.97004 * 119.99664 * 0.02562 * 17 16 14 39 39 H 1.09004 * 109.52798 * 295.12041 * 22 20 18 40 40 H 1.09004 * 109.52781 * 55.31220 * 22 20 18 41 41 H 1.08995 * 109.53030 * 298.01758 * 24 23 22 42 42 H 1.09001 * 109.52596 * 177.81626 * 24 23 22 43 43 H 1.09008 * 109.52535 * 184.78367 * 25 24 23 44 44 H 1.08996 * 109.57984 * 64.62209 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0655 -1.2164 0.2288 9 7 1.3570 -2.3698 -0.2918 10 6 0.2122 -2.3774 -1.2128 11 6 0.4782 -3.4149 -2.3141 12 6 0.7744 -4.7707 -1.6690 13 6 2.0286 -4.6603 -0.7989 14 6 1.7837 -3.6378 0.3154 15 1 1.0046 -4.0030 0.9845 16 6 3.0763 -3.4194 1.1042 17 7 2.8425 -2.4324 2.1613 18 6 3.8466 -2.0801 2.9883 19 8 4.9437 -2.5805 2.8578 20 6 3.6059 -1.0652 4.0761 21 1 3.2047 -0.1509 3.6388 22 6 2.6064 -1.6290 5.0901 23 8 2.4700 -0.7078 6.1765 24 6 3.7031 -0.4186 6.8420 25 6 4.7013 0.1458 5.8270 26 8 4.8390 -0.7760 4.7416 27 1 -0.4850 0.8400 0.0004 28 1 -0.6935 -2.6432 -0.6677 29 1 0.0959 -1.3900 -1.6594 30 1 1.3335 -3.1023 -2.9130 31 1 -0.4015 -3.5001 -2.9521 32 1 0.9373 -5.5156 -2.4479 33 1 -0.0713 -5.0712 -1.0506 34 1 2.8693 -4.3360 -1.4119 35 1 2.2529 -5.6318 -0.3583 36 1 3.3931 -4.3620 1.5508 37 1 3.8545 -3.0558 0.4331 38 1 1.9648 -2.0330 2.2663 39 1 1.6392 -1.7711 4.6079 40 1 2.9702 -2.5847 5.4675 41 1 4.1049 -1.3331 7.2782 42 1 3.5290 0.3155 7.6287 43 1 5.6689 0.2888 6.3084 44 1 4.3376 1.1014 5.4496 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024339149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:53 Heat of formation + Delta-G solvation = -122.463216 kcal Electronic energy + Delta-G solvation = -26068.650378 eV Core-core repulsion = 22406.990573 eV Total energy + Delta-G solvation = -3661.659805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53842 -40.20410 -39.16292 -37.11249 -35.72694 -34.89291 -33.23199 -32.01896 -31.60978 -29.33466 -27.61428 -26.59495 -25.68112 -23.80973 -22.94830 -22.22637 -21.41644 -20.68018 -18.96244 -18.14423 -17.99236 -17.66372 -17.20251 -16.97767 -16.52899 -16.31949 -15.99720 -15.77548 -15.42474 -15.12121 -14.83685 -14.60800 -14.48762 -14.11300 -14.02875 -13.60960 -13.49268 -13.24461 -12.84511 -12.81462 -12.62644 -12.56611 -12.33047 -12.04618 -11.94563 -11.78898 -11.64160 -11.51419 -11.13224 -11.07438 -10.77181 -10.52042 -10.30413 -9.90830 -8.55061 -7.83059 -5.29356 1.39337 1.45487 1.49177 1.50559 1.86884 2.48255 2.61841 2.94299 3.31717 3.42691 3.58536 3.72558 3.81511 3.95250 4.00227 4.11212 4.23030 4.24543 4.28722 4.43715 4.45788 4.49854 4.56527 4.66025 4.74478 4.75780 4.76729 4.88594 5.01460 5.16085 5.24308 5.30095 5.37847 5.48279 5.55468 5.65045 5.75484 5.83226 5.85882 5.86837 6.44678 6.61241 7.19442 7.22577 7.89461 8.42621 9.20652 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.005520 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.131542 B = 5071.296020 C = 6070.287236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.030 4.030 3 Si 0.933 3.067 4 H -0.293 1.293 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.060 0.940 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.039 0.961 16 C 0.139 3.861 17 N -0.685 5.685 18 C 0.517 3.483 19 O -0.576 6.576 20 C 0.041 3.959 21 H 0.086 0.914 22 C 0.049 3.951 23 O -0.386 6.386 24 C 0.019 3.981 25 C 0.013 3.987 26 O -0.380 6.380 27 H 0.249 0.751 28 H 0.004 0.996 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.414 0.586 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -5.294 8.490 10.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.227 4.227 3 Si 0.763 3.237 4 H -0.219 1.219 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.077 0.923 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.054 3.946 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.337 5.337 18 C 0.302 3.698 19 O -0.456 6.456 20 C -0.021 4.021 21 H 0.104 0.896 22 C -0.028 4.028 23 O -0.305 6.305 24 C -0.057 4.057 25 C -0.063 4.063 26 O -0.299 6.299 27 H 0.058 0.942 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.252 0.748 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.142 -5.512 8.405 10.530 hybrid contribution 0.027 1.681 -0.309 1.709 sum 3.168 -3.831 8.095 9.500 Atomic orbital electron populations 1.70084 1.05813 1.25448 1.55261 1.25448 0.95600 0.99801 1.01813 0.85884 0.77963 0.81907 0.77901 1.21913 1.20746 1.21759 1.19152 0.91587 0.85010 1.41129 0.92268 1.44253 1.35732 1.02659 1.49903 1.20674 0.87900 0.96938 0.89231 1.22131 1.00346 0.96734 0.98321 1.21341 0.97438 0.96370 0.98827 1.21896 0.98216 0.98718 0.97331 1.20909 0.93057 0.87567 0.93078 0.94389 1.21324 0.97772 0.90988 0.88368 1.45934 1.13819 1.43049 1.30849 1.20142 0.84463 0.82467 0.82720 1.90636 1.25197 1.56311 1.73505 1.22515 0.87681 0.98444 0.93438 0.89619 1.23071 0.99983 0.92483 0.87296 1.88103 1.31603 1.64595 1.46213 1.23527 0.84461 1.02497 0.95208 1.23648 1.03035 0.91992 0.87595 1.88160 1.28478 1.65369 1.47858 0.94182 0.97776 0.93305 0.93758 0.91835 0.90860 0.92254 0.92947 0.89843 0.90405 0.93676 0.74837 0.86135 0.90928 0.91109 0.84539 0.84764 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.79 11.23 21.65 0.24 -49.55 16 2 C -0.03 -1.53 4.96 84.86 0.42 -1.11 16 3 Si 0.93 43.54 29.58 68.60 2.03 45.57 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.24 -11.74 6.97 84.03 0.59 -11.15 16 8 H 0.06 3.03 5.86 -2.91 -0.02 3.02 16 9 N -0.60 -26.60 2.97 -674.40 -2.00 -28.60 16 10 C 0.18 7.85 5.30 86.51 0.46 8.31 16 11 C -0.14 -4.73 6.10 30.82 0.19 -4.54 16 12 C -0.10 -2.93 5.88 30.62 0.18 -2.75 16 13 C -0.12 -3.65 5.37 30.67 0.16 -3.49 16 14 C 0.16 5.74 3.01 44.98 0.14 5.88 16 15 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 16 C 0.14 5.03 4.43 86.38 0.38 5.41 16 17 N -0.69 -25.52 3.81 -463.05 -1.76 -27.28 16 18 C 0.52 20.08 7.18 87.66 0.63 20.71 16 19 O -0.58 -26.16 16.51 15.89 0.26 -25.89 16 20 C 0.04 1.38 3.25 29.89 0.10 1.47 16 21 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 22 C 0.05 1.36 6.30 72.03 0.45 1.81 16 23 O -0.39 -10.27 10.85 -136.00 -1.47 -11.74 16 24 C 0.02 0.38 7.05 72.03 0.51 0.89 16 25 C 0.01 0.31 7.05 72.03 0.51 0.82 16 26 O -0.38 -12.81 10.03 -122.90 -1.23 -14.05 16 27 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 28 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.05 2.49 6.19 -2.39 -0.01 2.48 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 2.01 8.14 -2.38 -0.02 2.00 16 36 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.04 1.84 7.42 -2.39 -0.02 1.82 16 38 H 0.41 15.82 7.31 -92.70 -0.68 15.14 16 39 H 0.12 3.12 8.06 -2.38 -0.02 3.10 16 40 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.33 344.41 1.09 -63.24 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.31 Total: 26.05 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 4.71 Total: 22.25 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.52 Total: -105.43 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -2.45 Total: -51.68 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.33 1.09 -63.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024339149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.220 kcal (2) G-P(sol) polarization free energy of solvation -64.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds