Wall clock time and date at job start Tue Mar 31 2020 04:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99862 * 2 1 4 4 H 1.48495 * 109.47199 * 270.00251 * 3 2 1 5 5 H 1.48497 * 109.47010 * 29.99994 * 3 2 1 6 6 H 1.48497 * 109.46857 * 149.99847 * 3 2 1 7 7 C 1.38813 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00089 * 160.43137 * 7 2 1 9 9 N 1.36939 * 119.99666 * 340.42600 * 7 2 1 10 10 C 1.50165 * 120.53669 * 336.69203 * 9 7 2 11 11 C 1.46238 * 107.53230 * 109.56728 * 10 9 7 12 12 C 1.52530 * 114.27486 * 58.40695 * 11 10 9 13 13 C 1.50121 * 105.41354 * 270.59003 * 12 11 10 14 14 C 1.54847 * 110.81362 * 97.68442 * 13 12 11 15 15 H 1.09001 * 109.35695 * 81.34224 * 14 13 12 16 16 N 1.46504 * 109.35597 * 201.06240 * 14 13 12 17 17 C 1.34784 * 119.99719 * 205.00263 * 16 14 13 18 18 O 1.21280 * 120.00087 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.99746 * 180.02562 * 17 16 14 20 20 H 1.08994 * 109.52457 * 305.12935 * 19 17 16 21 21 C 1.53139 * 109.52565 * 65.32682 * 19 17 16 22 22 O 1.43069 * 109.15352 * 175.21312 * 21 19 17 23 23 C 1.43075 * 113.59189 * 302.04840 * 22 21 19 24 24 C 1.53139 * 109.15065 * 57.95000 * 23 22 21 25 25 O 1.43069 * 109.15352 * 304.68815 * 24 23 22 26 26 C 1.43436 * 120.53320 * 156.66910 * 9 7 2 27 27 H 0.97001 * 120.00331 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.84809 * 350.05697 * 10 9 7 29 29 H 1.09005 * 109.84702 * 229.07273 * 10 9 7 30 30 H 1.08998 * 108.52315 * 179.64781 * 11 10 9 31 31 H 1.08993 * 108.52041 * 297.32363 * 11 10 9 32 32 H 1.09004 * 110.25082 * 29.56701 * 12 11 10 33 33 H 1.09001 * 110.24739 * 151.47372 * 12 11 10 34 34 H 1.08994 * 109.21293 * 218.03060 * 13 12 11 35 35 H 1.08995 * 109.20925 * 337.39246 * 13 12 11 36 36 H 0.97000 * 119.99941 * 25.00498 * 16 14 13 37 37 H 1.09004 * 109.52664 * 295.11588 * 21 19 17 38 38 H 1.08999 * 109.52732 * 55.30697 * 21 19 17 39 39 H 1.09000 * 109.52369 * 298.04639 * 23 22 21 40 40 H 1.09004 * 109.58094 * 177.88290 * 23 22 21 41 41 H 1.09004 * 109.52664 * 184.78539 * 24 23 22 42 42 H 1.08999 * 109.52732 * 64.59430 * 24 23 22 43 43 H 1.09003 * 108.15924 * 149.86886 * 26 9 7 44 44 H 1.09005 * 107.99903 * 33.18251 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2290 -0.3138 9 7 1.3849 -2.3540 0.3963 10 6 0.1860 -2.2992 1.2988 11 6 -0.9807 -2.6834 0.5053 12 6 -0.8831 -4.0702 -0.1223 13 6 -0.2325 -3.8586 -1.4585 14 6 1.2861 -4.1517 -1.3837 15 1 1.4506 -5.2268 -1.4556 16 7 1.9654 -3.4812 -2.4952 17 6 3.1417 -3.9559 -2.9509 18 8 3.6380 -4.9377 -2.4405 19 6 3.8407 -3.2658 -4.0938 20 1 3.1629 -3.1924 -4.9443 21 6 4.2712 -1.8623 -3.6580 22 8 5.0305 -1.2568 -4.7086 23 6 6.1890 -2.0078 -5.0839 24 6 5.7585 -3.4113 -5.5197 25 8 4.9992 -4.0168 -4.4691 26 6 1.8642 -3.6322 -0.0439 27 1 -0.4851 0.8400 0.0004 28 1 0.0564 -1.2866 1.6810 29 1 0.3149 -2.9949 2.1280 30 1 -1.8609 -2.6552 1.1476 31 1 -1.1123 -1.9531 -0.2930 32 1 -0.2681 -4.7225 0.4978 33 1 -1.8776 -4.4983 -0.2480 34 1 -0.6906 -4.5243 -2.1900 35 1 -0.3826 -2.8252 -1.7708 36 1 1.5686 -2.6956 -2.9031 37 1 3.3879 -1.2578 -3.4520 38 1 4.8839 -1.9318 -2.7592 39 1 6.8663 -2.0822 -4.2331 40 1 6.6957 -1.5092 -5.9103 41 1 6.6418 -4.0158 -5.7258 42 1 5.1458 -3.3418 -6.4186 43 1 1.6379 -4.3650 0.7307 44 1 2.9480 -3.5697 -0.1430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034103989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:36 Heat of formation + Delta-G solvation = -112.217893 kcal Electronic energy + Delta-G solvation = -26398.556927 eV Core-core repulsion = 22737.341392 eV Total energy + Delta-G solvation = -3661.215535 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56532 -40.30463 -39.11279 -37.10087 -35.82907 -34.80115 -33.17080 -32.72035 -31.29986 -29.15977 -27.87486 -26.28946 -25.44016 -24.69991 -22.94526 -21.85028 -21.05832 -20.77552 -18.65556 -18.52940 -18.04111 -17.62822 -17.03238 -16.92019 -16.48587 -16.45254 -16.16186 -15.87359 -15.50815 -15.26051 -14.83215 -14.49436 -14.22287 -14.01201 -13.74600 -13.41590 -13.32875 -13.18728 -13.14866 -12.67518 -12.61514 -12.38324 -12.32471 -11.92865 -11.86776 -11.78532 -11.62457 -11.28658 -11.11040 -10.90199 -10.76732 -10.42989 -10.29373 -9.98763 -8.57085 -7.77792 -5.16763 1.46466 1.52030 1.53097 1.58653 1.85421 2.56068 2.61853 2.95361 3.35198 3.42953 3.63422 3.68938 3.79575 3.95410 3.98798 4.11082 4.19145 4.23188 4.44166 4.45524 4.54768 4.56343 4.62936 4.70785 4.76379 4.78394 4.86600 4.94133 5.08488 5.23967 5.33977 5.36619 5.48122 5.62980 5.68342 5.73502 5.83540 5.84981 5.88299 6.26197 6.45487 6.60958 7.22925 7.23970 7.95095 8.46202 9.25678 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.014030 B = 0.006214 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.272581 B = 4504.680803 C = 6036.708228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.029 4.029 3 Si 0.940 3.060 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.288 1.288 7 C -0.244 4.244 8 H 0.050 0.950 9 N -0.592 5.592 10 C 0.167 3.833 11 C -0.122 4.122 12 C -0.105 4.105 13 C -0.099 4.099 14 C 0.125 3.875 15 H 0.075 0.925 16 N -0.691 5.691 17 C 0.518 3.482 18 O -0.572 6.572 19 C 0.049 3.951 20 H 0.115 0.885 21 C 0.045 3.955 22 O -0.385 6.385 23 C 0.013 3.987 24 C 0.020 3.980 25 O -0.381 6.381 26 C 0.154 3.846 27 H 0.247 0.753 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.407 0.593 37 H 0.116 0.884 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -5.352 -9.979 11.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.226 4.226 3 Si 0.770 3.230 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.374 4.374 8 H 0.068 0.932 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.161 4.161 12 C -0.143 4.143 13 C -0.137 4.137 14 C 0.018 3.982 15 H 0.093 0.907 16 N -0.341 5.341 17 C 0.304 3.696 18 O -0.451 6.451 19 C -0.013 4.013 20 H 0.132 0.868 21 C -0.032 4.032 22 O -0.304 6.304 23 C -0.063 4.063 24 C -0.056 4.056 25 O -0.300 6.300 26 C 0.024 3.976 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.242 0.758 37 H 0.134 0.866 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 3.836 -5.893 -9.583 11.886 hybrid contribution 0.355 1.486 0.051 1.529 sum 4.192 -4.407 -9.532 11.307 Atomic orbital electron populations 1.70078 1.05431 1.25012 1.54804 1.25259 0.95757 0.99587 1.01974 0.85713 0.78010 0.81780 0.77460 1.21148 1.22290 1.21372 1.19092 0.92881 0.86243 1.39175 0.93198 1.44275 1.33873 1.00874 1.52297 1.20111 0.86049 0.98994 0.90486 1.20828 0.97307 0.96677 1.01261 1.20942 1.00235 0.97105 0.95987 1.21554 0.92294 1.01575 0.98286 1.22654 0.92677 0.95681 0.87226 0.90721 1.45895 1.21287 1.31767 1.35193 1.20239 0.81377 0.84104 0.83923 1.90653 1.65926 1.28304 1.60260 1.22501 0.89666 0.91687 0.97407 0.86771 1.23013 0.97705 0.92453 0.90053 1.88105 1.39726 1.48005 1.54533 1.23565 0.87530 0.92974 1.02221 1.23612 0.97553 0.94794 0.89685 1.88178 1.38159 1.47311 1.56331 1.20775 0.95355 0.87885 0.93549 0.94333 0.92340 0.96553 0.94725 0.90774 0.92095 0.90504 0.91596 0.92317 0.75751 0.86579 0.93265 0.92476 0.84372 0.85019 0.90395 0.93579 0.97063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.91 9.43 21.65 0.20 -46.71 16 2 C -0.03 -1.48 4.91 84.86 0.42 -1.06 16 3 Si 0.94 42.62 29.60 68.60 2.03 44.65 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.24 -12.29 9.62 84.03 0.81 -11.48 16 8 H 0.05 2.62 7.88 -2.91 -0.02 2.59 16 9 N -0.59 -27.21 2.60 -707.84 -1.84 -29.06 16 10 C 0.17 7.35 5.24 83.58 0.44 7.79 16 11 C -0.12 -4.76 5.02 28.36 0.14 -4.61 16 12 C -0.10 -3.35 5.76 29.51 0.17 -3.18 16 13 C -0.10 -3.23 5.23 30.30 0.16 -3.07 16 14 C 0.13 4.46 2.91 46.27 0.13 4.59 16 15 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 16 N -0.69 -23.57 5.05 -436.49 -2.20 -25.77 16 17 C 0.52 18.59 7.01 87.66 0.61 19.20 16 18 O -0.57 -24.98 16.17 15.91 0.26 -24.72 16 19 C 0.05 1.44 3.25 29.89 0.10 1.53 16 20 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 21 C 0.05 1.36 6.29 72.03 0.45 1.81 16 22 O -0.38 -10.53 10.85 -136.00 -1.48 -12.01 16 23 C 0.01 0.27 7.05 72.03 0.51 0.78 16 24 C 0.02 0.39 7.05 72.03 0.51 0.89 16 25 O -0.38 -11.54 10.03 -122.90 -1.23 -12.77 16 26 C 0.15 6.37 4.79 87.59 0.42 6.79 16 27 H 0.25 12.71 8.31 -92.71 -0.77 11.94 16 28 H 0.06 2.94 6.05 -2.39 -0.01 2.93 16 29 H 0.02 0.68 8.13 -2.38 -0.02 0.66 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 3.35 5.28 -2.39 -0.01 3.34 16 32 H 0.06 1.93 6.29 -2.38 -0.01 1.91 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 2.22 6.58 -2.39 -0.02 2.21 16 36 H 0.41 13.04 8.38 -92.71 -0.78 12.26 16 37 H 0.12 3.48 8.08 -2.39 -0.02 3.46 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.81 6.89 -2.39 -0.02 1.79 16 44 H 0.01 0.52 7.81 -2.38 -0.02 0.50 16 Total: -1.00 -62.80 339.72 0.83 -61.97 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.23 Total: 24.44 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 4.87 Total: 19.99 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -3.84 Total: -101.53 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -2.45 Total: -49.50 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -62.80 0.83 -61.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034103989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.251 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds