Wall clock time and date at job start Tue Mar 31 2020 04:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48504 * 109.46901 * 274.15081 * 3 2 1 5 5 H 1.48504 * 109.47303 * 34.14759 * 3 2 1 6 6 H 1.48501 * 109.46970 * 154.15002 * 3 2 1 7 7 C 1.38803 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00591 * 197.16190 * 7 2 1 9 9 N 1.36940 * 120.00273 * 17.15960 * 7 2 1 10 10 C 1.47158 * 120.97691 * 26.43201 * 9 7 2 11 11 C 1.53709 * 108.16441 * 129.43215 * 10 9 7 12 12 O 1.42955 * 109.15034 * 52.53334 * 11 10 9 13 13 C 1.42961 * 114.16892 * 297.29240 * 12 11 10 14 14 H 1.09002 * 109.51304 * 302.65552 * 13 12 11 15 15 C 1.53001 * 109.55750 * 182.52967 * 13 12 11 16 16 N 1.46499 * 109.47110 * 65.22512 * 15 13 12 17 17 C 1.34772 * 119.99858 * 179.97438 * 16 15 13 18 18 O 1.21287 * 120.00097 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99976 * 179.97438 * 17 16 15 20 20 H 1.08997 * 109.52165 * 60.00180 * 19 17 16 21 21 C 1.53181 * 109.52426 * 180.12950 * 19 17 16 22 22 C 1.53180 * 109.03681 * 176.89145 * 21 19 17 23 23 C 1.53095 * 109.15805 * 303.01543 * 22 21 19 24 24 O 1.42899 * 109.41455 * 57.61465 * 23 22 21 25 25 C 1.42915 * 114.15323 * 298.86666 * 24 23 22 26 26 C 1.47145 * 120.98818 * 206.70963 * 9 7 2 27 27 H 0.96998 * 120.00361 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.67714 * 249.20754 * 10 9 7 29 29 H 1.09001 * 109.68050 * 9.75702 * 10 9 7 30 30 H 1.09007 * 109.65426 * 292.56823 * 11 10 9 31 31 H 1.08995 * 109.44257 * 172.37307 * 11 10 9 32 32 H 1.09001 * 109.47186 * 185.22743 * 15 13 12 33 33 H 1.09003 * 109.46727 * 305.22380 * 15 13 12 34 34 H 0.97003 * 119.99837 * 0.02562 * 16 15 13 35 35 H 1.09000 * 109.54227 * 296.75560 * 21 19 17 36 36 H 1.08993 * 109.54483 * 57.02009 * 21 19 17 37 37 H 1.08998 * 109.52700 * 62.92048 * 22 21 19 38 38 H 1.08997 * 109.51580 * 183.11602 * 22 21 19 39 39 H 1.08999 * 109.47743 * 177.59184 * 23 22 21 40 40 H 1.08997 * 109.48147 * 297.61287 * 23 22 21 41 41 H 1.08999 * 109.42736 * 301.11596 * 25 24 23 42 42 H 1.09000 * 109.53351 * 181.07547 * 25 24 23 43 43 H 1.09000 * 109.68266 * 350.23291 * 26 9 7 44 44 H 1.09000 * 109.68581 * 110.79267 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4098 2.0971 -1.3965 5 1 1.4942 2.6259 0.7859 6 1 3.5888 1.4165 0.6105 7 6 2.0102 -1.2020 -0.0005 8 1 3.0542 -1.2230 0.2754 9 7 1.3714 -2.3615 -0.3509 10 6 0.2048 -2.3422 -1.2478 11 6 0.4449 -3.3665 -2.3684 12 8 0.7767 -4.6293 -1.7863 13 6 1.9851 -4.6222 -1.0223 14 1 2.8115 -4.2911 -1.6512 15 6 2.2712 -6.0328 -0.5033 16 7 2.5397 -6.9242 -1.6345 17 6 2.8196 -8.2243 -1.4162 18 8 2.8487 -8.6565 -0.2833 19 6 3.0953 -9.1414 -2.5798 20 1 3.9595 -8.7762 -3.1346 21 6 3.3795 -10.5546 -2.0617 22 6 3.5812 -11.4932 -3.2553 23 6 2.3404 -11.4413 -4.1506 24 8 2.1152 -10.0947 -4.5726 25 6 1.8739 -9.1791 -3.5021 26 6 1.8273 -3.6627 0.1629 27 1 -0.4850 0.8400 0.0004 28 1 -0.6923 -2.6089 -0.6888 29 1 0.0882 -1.3471 -1.6770 30 1 1.2658 -3.0308 -3.0022 31 1 -0.4602 -3.4682 -2.9670 32 1 3.1400 -6.0087 0.1545 33 1 1.4064 -6.3986 0.0502 34 1 2.5168 -6.5784 -2.5405 35 1 4.2814 -10.5441 -1.4497 36 1 2.5360 -10.9005 -1.4643 37 1 4.4548 -11.1760 -3.8247 38 1 3.7291 -12.5118 -2.8966 39 1 2.4957 -12.0746 -5.0240 40 1 1.4744 -11.7973 -3.5927 41 1 1.0010 -9.5047 -2.9363 42 1 1.6938 -8.1835 -3.9077 43 1 2.7857 -3.5426 0.6680 44 1 1.0908 -4.0602 0.8613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035304972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:43 Heat of formation + Delta-G solvation = -114.685440 kcal Electronic energy + Delta-G solvation = -24766.586038 eV Core-core repulsion = 21105.263502 eV Total energy + Delta-G solvation = -3661.322536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.46311 -38.93694 -38.30316 -35.00154 -34.33785 -33.84262 -32.09079 -31.35781 -30.48454 -27.57141 -25.88962 -25.15726 -24.29153 -23.20658 -21.93231 -21.11147 -20.20602 -19.54109 -17.55167 -16.89928 -16.60749 -16.33919 -16.05132 -15.75065 -15.27079 -15.04229 -14.56965 -14.51446 -14.22082 -13.94422 -13.78174 -13.39295 -13.17884 -13.08698 -12.86308 -12.71094 -12.37450 -11.84383 -11.60978 -11.44089 -11.24197 -11.15909 -10.89759 -10.76701 -10.71757 -10.45118 -10.28715 -10.05716 -10.00121 -9.76575 -9.64420 -9.10830 -9.03065 -8.58384 -6.79900 -5.88344 -3.32498 2.56091 3.11121 3.31696 3.38979 3.40488 3.54938 4.18653 4.32183 4.39555 4.51699 4.53222 4.60729 4.81045 4.96370 5.06125 5.10867 5.27789 5.29173 5.38047 5.43901 5.44695 5.48444 5.53601 5.63298 5.75880 5.80511 5.82483 5.98480 5.99390 6.10981 6.23657 6.32565 6.44149 6.47361 6.71072 6.81102 7.05793 7.46691 7.49116 7.67254 7.80736 8.17992 8.29337 9.07195 9.69755 10.26661 11.19744 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.035672 B = 0.002790 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.747128 B =10033.986016 C =10371.592871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.140 3.860 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.129 3.871 16 N -0.719 5.719 17 C 0.517 3.483 18 O -0.542 6.542 19 C -0.144 4.144 20 H 0.105 0.895 21 C -0.102 4.102 22 C -0.156 4.156 23 C 0.056 3.944 24 O -0.377 6.377 25 C 0.072 3.928 26 C 0.122 3.878 27 H 0.255 0.745 28 H 0.029 0.971 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.403 0.597 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 -19.273 -8.849 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.005 3.995 16 N -0.370 5.370 17 C 0.302 3.698 18 O -0.419 6.419 19 C -0.165 4.165 20 H 0.123 0.877 21 C -0.140 4.140 22 C -0.194 4.194 23 C -0.020 4.020 24 O -0.296 6.296 25 C -0.005 4.005 26 C -0.006 4.006 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.082 0.918 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.884 -19.505 -8.208 21.718 hybrid contribution 0.517 1.360 -0.046 1.456 sum 5.401 -18.145 -8.254 20.653 Atomic orbital electron populations 1.70034 1.05289 1.25713 1.53591 1.25060 0.95352 0.98535 1.00663 0.86221 0.79138 0.83428 0.77655 1.21375 1.21658 1.20313 1.19214 0.92730 0.84493 1.42147 0.91302 1.44097 1.34208 1.01044 1.52449 1.21528 0.89188 0.98258 0.89618 1.23403 0.99082 0.84857 0.96504 1.87779 1.41915 1.32692 1.68543 1.22805 0.87711 0.93816 0.95163 0.92345 1.21438 1.01607 0.87919 0.88493 1.46024 1.70913 1.09100 1.10974 1.20380 0.76624 0.82440 0.90338 1.90703 1.51548 1.75708 1.23943 1.22018 1.01670 0.96706 0.96130 0.87671 1.21402 1.03520 0.91967 0.97117 1.22233 0.99351 1.00537 0.97285 1.22645 0.96579 0.83760 0.99064 1.87964 1.91772 1.18102 1.31724 1.22531 0.94837 0.94617 0.88565 1.21444 0.98979 0.87238 0.92915 0.93461 0.95304 0.88828 0.94037 0.90021 0.90116 0.90625 0.76238 0.90649 0.90857 0.90899 0.90445 0.88716 0.92968 0.92355 0.88051 0.91779 0.95241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 11.17 55.49 0.62 -25.11 16 2 C 0.00 0.08 4.94 -17.44 -0.09 -0.01 16 3 Si 0.91 21.23 29.59 -169.99 -5.03 16.21 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.89 9.64 -15.06 -0.15 -7.04 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.65 3.04 -171.57 -0.52 -15.18 16 10 C 0.14 3.27 5.47 -3.31 -0.02 3.25 16 11 C 0.04 0.73 7.00 37.53 0.26 1.00 16 12 O -0.39 -7.06 10.34 -35.23 -0.36 -7.42 16 13 C 0.06 1.10 2.81 -26.57 -0.07 1.02 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.89 5.35 -4.04 -0.02 1.87 16 16 N -0.72 -8.97 5.41 -60.29 -0.33 -9.30 16 17 C 0.52 6.65 7.16 -10.99 -0.08 6.57 16 18 O -0.54 -8.94 15.97 5.55 0.09 -8.86 16 19 C -0.14 -1.39 2.72 -91.63 -0.25 -1.64 16 20 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.10 -0.95 4.62 -26.54 -0.12 -1.07 16 22 C -0.16 -1.11 6.14 -26.59 -0.16 -1.27 16 23 C 0.06 0.42 6.84 37.21 0.25 0.68 16 24 O -0.38 -3.73 10.76 -35.23 -0.38 -4.11 16 25 C 0.07 0.67 6.01 37.21 0.22 0.90 16 26 C 0.12 2.49 6.02 -3.53 -0.02 2.47 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 29 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 30 H 0.04 0.76 8.14 -51.92 -0.42 0.33 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 4.33 7.95 -40.82 -0.32 4.00 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.86 7.65 -51.93 -0.40 0.47 16 43 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 350.26 15.07 5.28 5.28 Total: -1.00 -31.58 350.26 -8.21 -39.79 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.34 Total: 1.98 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -0.24 Total: 6.72 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.23 Total: -49.59 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.65 Total: -20.39 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.58 -8.21 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035304972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.896 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds